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Extract neural data from NWB #2

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alexpiet opened this issue Feb 10, 2024 · 1 comment
Open

Extract neural data from NWB #2

alexpiet opened this issue Feb 10, 2024 · 1 comment
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enhancement New feature or request

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@alexpiet
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Is your feature request related to a problem? Please describe.
The NWB file will contain processed, time aligned data. We would like a function that extracts that data into standard dataframes

Describe the solution you'd like

  • FIP
    • tidy dataframe, each row is a measurement
    • columns: timestamps, NM type, value
  • Ephys
    • probably xarray, does the ephys team already have a tool that does this?
@jsiegle
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jsiegle commented Feb 29, 2024

I think this should be part of a general package, aind-nwb-utils that makes it really simple to read data from NWB files into standard formats. This will be widely used across projects.

@hanhou hanhou added enhancement New feature or request blocked The issue is blocked by an external dependency and removed blocked The issue is blocked by an external dependency labels Mar 6, 2024
@ZhixiaoSu ZhixiaoSu assigned ZhixiaoSu and unassigned ZhixiaoSu Mar 12, 2024
@ZhixiaoSu ZhixiaoSu self-assigned this Apr 1, 2024
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