FATAL:TypeError: cannot use a str to initialize an array with typecode 'c'

[alexpiet]

This issue was automatically generated from GUI logs.

file: Foraging.py
function: exception_hook
line 4904
logfile: W10DT714669/W10DT714669-B_gui_log_2024-12-23_11-55-42.txt
boxes: 9B
count: 3
text: FATAL:TypeError: cannot use a str to initialize an array with typecode 'c'

GUI Log snippet (click for full log)

11:55:53 AM:INFO:curriculum_manager:curriculum_manager.py:download_curriculums:line 162:Found 26 curriculums in C:\Users\svc_aind_behavior/.aind_auto_train/curriculum_manager/
11:55:53 AM:INFO:Dialogs:Dialogs.py:update_auto_train_fields:line 2292:No entry found in df_training_manager for subject_id: 0
11:55:53 AM:INFO:Dialogs:Dialogs.py:_override_curriculum_clicked:line 2640:Override stage clicked: state=2
11:55:53 AM:INFO:Dialogs:Dialogs.py:_update_stage_to_apply:line 2666:Current stage to apply: unknown training stage @unknown curriculum
11:58:20 AM:ERROR:Foraging:Foraging.py:exception_hook:line 4904:FATAL ERROR: 
Traceback (most recent call last):
  File "C:\Users\svc_aind_behavior\Documents\GitHub\dynamic-foraging-task\src\foraging_gui\Dialogs.py", line 1206, in _start_preview
    self.MainWindow.Channel.CameraStartType(int(2))
  File "C:\Users\svc_aind_behavior\Documents\GitHub\dynamic-foraging-task\src\foraging_gui\rigcontrol.py", line 226, in CameraStartType
    self.send("/camerastarttype", value)
  File "C:\Users\svc_aind_behavior\Documents\GitHub\dynamic-foraging-task\src\foraging_gui\rigcontrol.py", line 60, in send
    return self.client.sendOSC(message)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\svc_aind_behavior\AppData\Local\miniconda3\envs\Foraging\Lib\site-packages\pyOSC3\OSC3.py", line 2869, in sendOSC
    txOk = self._transmitMsgWithTimeout(msg)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\svc_aind_behavior\AppData\Local\miniconda3\envs\Foraging\Lib\site-packages\pyOSC3\OSC3.py", line 2857, in _transmitMsgWithTimeout
    len_big_endian = array.array('c', '\0' * 4)
                     ^^^^^^^^^^^^^^^^^^^^^^^^^^
TypeError: cannot use a str to initialize an array with typecode 'c'

Full GUI log

11:55:42 AM:INFO:Foraging:Foraging.py:start_gui_log_file:line 4796:Starting logfile!
11:55:43 AM:INFO:Foraging:Foraging.py:log_git_hash:line 4807:Python version: 3.11.11 | packaged by Anaconda, Inc. | (main, Dec 11 2024, 16:34:19) [MSC v.1929 64 bit (AMD64)]
11:55:43 AM:INFO:Foraging:Foraging.py:log_git_hash:line 4824:Current git commit branch, hash: main, 698fb9fecded812fcf96d570658d9bc3766b14c6
11:55:43 AM:INFO:Foraging:Foraging.py:log_git_hash:line 4828:Current foraging_gui version: 1.6.19
11:55:43 AM:WARNING:Foraging:Foraging.py:log_git_hash:line 4838:local repository is clean
11:55:43 AM:INFO:Foraging:Foraging.py:<module>:line 4944:Setting QApplication attributes
11:55:43 AM:INFO:Foraging:Foraging.py:<module>:line 4952:Starting QApplication and Window
11:55:43 AM:INFO:Foraging:Foraging.py:__init__:line 77:Creating Window
11:55:43 AM:INFO:Foraging:Foraging.py:_GetSettings:line 1211:Loaded settings_box file
11:55:43 AM:INFO:Foraging:Foraging.py:_GetSettings:line 1239:Loaded settings file
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (FIP_settings), using default: C:\Users\svc_aind_behavior\Documents\FIPSettings
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (bonsai_config_path), using default: C:\Users\svc_aind_behavior\Documents\GitHub\dynamic-foraging-task\bonsai\Bonsai.config
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (metadata_dialog_folder), using default: C:\Users\svc_aind_behavior\Documents\ForagingSettings\metadata_dialog\
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (rig_metadata_folder), using default: C:\Users\svc_aind_behavior\Documents\ForagingSettings\rig_metadata\
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (project_info_file), using default: C:\Users\svc_aind_behavior\Documents\ForagingSettings\Project Name and Funding Source v2.csv
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (schedule_path), using default: Z:\dynamic_foraging\DynamicForagingSchedule.csv
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (go_cue_decibel_box1), using default: 60
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (go_cue_decibel_box2), using default: 60
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (go_cue_decibel_box3), using default: 60
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (go_cue_decibel_box4), using default: 60
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (lick_spout_distance_box1), using default: 5000
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (lick_spout_distance_box2), using default: 5000
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (lick_spout_distance_box3), using default: 5000
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (lick_spout_distance_box4), using default: 5000
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (name_mapper_file), using default: C:\Users\svc_aind_behavior\Documents\ForagingSettings\name_mapper.json
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (create_rig_metadata), using default: True
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (save_each_trial), using default: True
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (AutomaticUpload), using default: True
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (manifest_flag_dir), using default: C:\Users\svc_aind_behavior\Documents\aind_watchdog_service\manifest
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (auto_engage), using default: True
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (clear_figure_after_save), using default: True
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetSettings:line 1249:Missing setting (add_default_project_name), using default: True
11:55:43 AM:INFO:Foraging:Foraging.py:_LoadSchedule:line 1137:Loaded behavior schedule
11:55:43 AM:WARNING:Foraging:Foraging.py:_GetWaterCalibration:line 1105:Did not find a recent water calibration file
11:55:43 AM:INFO:Foraging:Foraging.py:_load_most_recent_rig_json:line 1572:Found existing rig.json: rig_428-9-B_2024-12-23_10_58_15.json
11:55:43 AM:INFO:RigJsonBuilder:RigJsonBuilder.py:build_rig_json_core:line 60:building rig json
11:55:43 AM:INFO:RigJsonBuilder:RigJsonBuilder.py:build_rig_json_core:line 624:finished building rig json
11:55:43 AM:INFO:RigJsonBuilder:RigJsonBuilder.py:build_rig_json:line 42:differences with existing rig json: {'type_changes': {"root['stimulus_devices'][0]['stage_type']['serial_number']": {'old_type': <class 'NoneType'>, 'new_type': <class 'str'>, 'old_value': None, 'new_value': '123123'}, "root['stimulus_devices'][0]['stage_type']['manufacturer']['abbreviation']": {'old_type': <class 'str'>, 'new_type': <class 'NoneType'>, 'old_value': 'AIND', 'new_value': None}, "root['stimulus_devices'][0]['stage_type']['manufacturer']['registry']": {'old_type': <class 'dict'>, 'new_type': <class 'NoneType'>, 'old_value': {'name': 'Research Organization Registry', 'abbreviation': 'ROR'}, 'new_value': None}, "root['stimulus_devices'][0]['stage_type']['manufacturer']['registry_identifier']": {'old_type': <class 'str'>, 'new_type': <class 'NoneType'>, 'old_value': '04szwah67', 'new_value': None}, "root['stimulus_devices'][0]['stage_type']['model']": {'old_type': <class 'NoneType'>, 'new_type': <class 'str'>, 'old_value': None, 'new_value': 'XYZ Stage with M30LS-3.4-15 linear stages'}, "root['stimulus_devices'][0]['stage_type']['notes']": {'old_type': <class 'str'>, 'new_type': <class 'NoneType'>, 'old_value': 'https://allenneuraldynamics.github.io/Bonsai.AllenNeuralDynamics/articles/aind-manipulator.html', 'new_value': None}, "root['stimulus_devices'][0]['stage_type']['firmware']": {'old_type': <class 'NoneType'>, 'new_type': <class 'str'>, 'old_value': None, 'new_value': 'https://github.com/AllenNeuralDynamics/python-newscale, branch: axes-on-target, commit #7c17497'}}, 'values_changed': {"root['stimulus_devices'][0]['stage_type']['name']": {'new_value': 'NewScaleMotor for LickSpouts', 'old_value': 'AIND lick spout stage'}, "root['stimulus_devices'][0]['stage_type']['manufacturer']['name']": {'new_value': 'New Scale Technologies', 'old_value': 'Allen Institute for Neural Dynamics'}, "root['stimulus_devices'][0]['stage_type']['travel']": {'new_value': '15.0', 'old_value': '30'}}}
11:55:43 AM:INFO:RigJsonBuilder:RigJsonBuilder.py:build_rig_json:line 51:Saving new rig json: rig_428-9-B_2024-12-23_11_55_43.json
11:55:43 AM:INFO:Foraging:Foraging.py:_LoadUI:line 299:Using ForagingGUI.ui interface
11:55:43 AM:INFO:Foraging:Foraging.py:__init__:line 143:Setting Window title: 428-9-B
11:55:43 AM:INFO:Foraging:Foraging.py:_InitializeBonsai:line 1409:Trying to connect to already running Bonsai
11:55:43 AM:INFO:Foraging:Foraging.py:_ConnectOSC:line 1456:connecting to GUI and Bonsai through OSC
11:55:44 AM:INFO:Foraging:Foraging.py:_InitializeBonsai:line 1413:Could not connect: timed out
11:55:44 AM:INFO:Foraging:Foraging.py:_InitializeBonsai:line 1422:Starting Bonsai
11:55:44 AM:INFO:Foraging:Foraging.py:log_subprocess_output:line 4911:BONSAI logging starting
11:55:45 AM:INFO:Foraging:Foraging.py:_ConnectOSC:line 1456:connecting to GUI and Bonsai through OSC
11:55:46 AM:INFO:Foraging:Foraging.py:_InitializeBonsai:line 1436:Could not connect, total waiting time 0.5 seconds: timed out
11:55:46 AM:INFO:Foraging:Foraging.py:_ConnectOSC:line 1456:connecting to GUI and Bonsai through OSC
11:55:47 AM:INFO:Foraging:Foraging.py:_InitializeBonsai:line 1436:Could not connect, total waiting time 1.0 seconds: timed out
11:55:48 AM:INFO:Foraging:Foraging.py:_ConnectOSC:line 1456:connecting to GUI and Bonsai through OSC
11:55:49 AM:INFO:Foraging:Foraging.py:_InitializeBonsai:line 1436:Could not connect, total waiting time 1.5 seconds: timed out
11:55:49 AM:INFO:Foraging:Foraging.py:_ConnectOSC:line 1456:connecting to GUI and Bonsai through OSC
11:55:50 AM:INFO:Foraging:Foraging.py:_InitializeBonsai:line 1439:Connected to Bonsai after 2.0 seconds
11:55:50 AM:INFO:Foraging:Foraging.py:_InitializeBonsai:line 1440:Bonsai started successfully
11:55:50 AM:INFO:Foraging:Foraging.py:_ConnectSlims:line 1318:Attempting to connect to Slims
11:55:51 AM:INFO:Foraging:Foraging.py:_ConnectSlims:line 1335:Successfully connected to Slims
11:55:51 AM:WARNING:Dialogs:Dialogs.py:_LoadCalibrationParameters:line 480:could not find water calibration parameters: C:\Users\svc_aind_behavior\Documents\ForagingSettings\WaterCalibrationPar_2.json
11:55:51 AM:WARNING:warnings:warnings.py:_showwarnmsg:line 110:C:\Users\svc_aind_behavior\Documents\GitHub\dynamic-foraging-task\src\foraging_gui\Visualization.py:403: UserWarning: No artists with labels found to put in legend.  Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
  self.ax1.legend(loc='lower right', fontsize=8)

11:55:51 AM:INFO:Foraging:Foraging.py:_InitializeMotorStage:line 912:Scanning for newscale stages
11:55:51 AM:INFO:Foraging:Foraging.py:_InitializeMotorStage:line 922:Could not find any instances of NewScale Stage
11:55:51 AM:INFO:Foraging:Foraging.py:_GetPositions:line 816:GetPositions called, but no current stage
11:55:51 AM:INFO:Foraging:Foraging.py:_GetPositions:line 816:GetPositions called, but no current stage
11:55:51 AM:INFO:Foraging:Foraging.py:keyPressEvent:line 1901:processing parameter changes
11:55:51 AM:INFO:Foraging:Foraging.py:_StopPhotometry:line 3522:Checking that photometry is not running
11:55:51 AM:INFO:Foraging:Foraging.py:_StopPhotometry:line 3532:Photometry excitation stopped
11:55:51 AM:INFO:Foraging:Foraging.py:_load_most_recent_rig_json:line 1572:Found existing rig.json: rig_428-9-B_2024-12-23_11_55_43.json
11:55:51 AM:INFO:Foraging:Foraging.py:__init__:line 243:Start up complete
11:55:51 AM:INFO:credentials:credentials.py:load:line 621:Found credentials in shared credentials file: ~/.aws/credentials
11:55:52 AM:INFO:aws_util:aws_util.py:import_df_from_s3:line 53:Dataframe imported from s3://aind-behavior-data/foraging_nwb_bonsai_processed/df_sessions.pkl, len(df) = 11636
11:55:52 AM:INFO:aws_util:aws_util.py:import_df_from_s3:line 53:Dataframe imported from s3://aind-behavior-data/foraging_auto_training/df_manager_447_demo.pkl, len(df) = 4708
11:55:53 AM:INFO:aws_util:aws_util.py:download_dir_from_s3:line 78:134 objects downloaded from s3://aind-behavior-data/foraging_auto_training/saved_curriculums/ to C:\Users\svc_aind_behavior/capsule/scratch/saved_curriculums/
11:55:53 AM:INFO:curriculum_manager:curriculum_manager.py:download_curriculums:line 162:Found 26 curriculums in C:\Users\svc_aind_behavior/capsule/scratch/saved_curriculums/
11:55:53 AM:INFO:aws_util:aws_util.py:download_dir_from_s3:line 78:134 objects downloaded from s3://aind-behavior-data/foraging_auto_training/saved_curriculums/ to C:\Users\svc_aind_behavior/.aind_auto_train/curriculum_manager/
11:55:53 AM:INFO:curriculum_manager:curriculum_manager.py:download_curriculums:line 162:Found 26 curriculums in C:\Users\svc_aind_behavior/.aind_auto_train/curriculum_manager/
11:55:53 AM:INFO:Dialogs:Dialogs.py:update_auto_train_fields:line 2292:No entry found in df_training_manager for subject_id: 0
11:55:53 AM:INFO:Dialogs:Dialogs.py:_override_curriculum_clicked:line 2640:Override stage clicked: state=2
11:55:53 AM:INFO:Dialogs:Dialogs.py:_update_stage_to_apply:line 2666:Current stage to apply: unknown training stage @unknown curriculum
11:58:20 AM:ERROR:Foraging:Foraging.py:exception_hook:line 4904:FATAL ERROR: 
Traceback (most recent call last):
  File "C:\Users\svc_aind_behavior\Documents\GitHub\dynamic-foraging-task\src\foraging_gui\Dialogs.py", line 1206, in _start_preview
    self.MainWindow.Channel.CameraStartType(int(2))
  File "C:\Users\svc_aind_behavior\Documents\GitHub\dynamic-foraging-task\src\foraging_gui\rigcontrol.py", line 226, in CameraStartType
    self.send("/camerastarttype", value)
  File "C:\Users\svc_aind_behavior\Documents\GitHub\dynamic-foraging-task\src\foraging_gui\rigcontrol.py", line 60, in send
    return self.client.sendOSC(message)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\svc_aind_behavior\AppData\Local\miniconda3\envs\Foraging\Lib\site-packages\pyOSC3\OSC3.py", line 2869, in sendOSC
    txOk = self._transmitMsgWithTimeout(msg)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\svc_aind_behavior\AppData\Local\miniconda3\envs\Foraging\Lib\site-packages\pyOSC3\OSC3.py", line 2857, in _transmitMsgWithTimeout
    len_big_endian = array.array('c', '\0' * 4)
                     ^^^^^^^^^^^^^^^^^^^^^^^^^^
TypeError: cannot use a str to initialize an array with typecode 'c'