Metage2Metabo v1.1.3

Fix:

• m2m tries to create a target sbml from an empty added value.

Metage2Metabo v1.1.2

Add:

• test for sbml conversion.
• tests for m2m_analysis.
• article seeds in article_data.

Fix:

• issue with m2m recon and workflow when reconstructing a metabolic network from only one organism.

Update:

• requirements.
• Singularity and Docker recipes.
• travis yml file with m2m_analysis dependencies.

Metage2Metabo v1.1.1

Add:

• log to m2m_analysis.
• keystone species to m2m log.

Fix:

• m2m_analysis readthedocs.
• numerous issues with m2m_analysis.

Metage2Metabo v1.1.0

Add:

• m2m_analysis: optimal solutions enumeration, graph representation and compression into a powergraph.
• padmet creation after Pathway Tools reconstruction (wtih -p argument for m2m recon and workflow).
• statistics on genes/reactions/compounds in GSM after the reconstruction.

Fix:

• miscoto and clyngor memory issue with solutions enumeration.

Update:

• readthedocs by adding m2m_analysis.

Metage2Metabo v1.0.0

Update/Fix:

• replace pyasp with clyngor.

Metage2Metabo v0.0.10

First release, uses Pyasp as a support for ASP computing.