diff --git a/404.html b/404.html deleted file mode 100644 index 086a5c9e..00000000 --- a/404.html +++ /dev/null @@ -1,25 +0,0 @@ ---- -permalink: /404.html -layout: default ---- - - - -
-

404

- -

Page not found :(

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The requested page could not be found.

-
diff --git a/CNAME b/CNAME deleted file mode 100644 index cb46cff7..00000000 --- a/CNAME +++ /dev/null @@ -1 +0,0 @@ -criptscripts.org \ No newline at end of file diff --git a/Gemfile b/Gemfile deleted file mode 100644 index 30398d3b..00000000 --- a/Gemfile +++ /dev/null @@ -1,35 +0,0 @@ -source "https://rubygems.org" -# Hello! This is where you manage which Jekyll version is used to run. -# When you want to use a different version, change it below, save the -# file and run `bundle install`. Run Jekyll with `bundle exec`, like so: -# -# bundle exec jekyll serve -# -# This will help ensure the proper Jekyll version is running. -# Happy Jekylling! -# gem "jekyll", "~> 4.2.2" -# This is the default theme for new Jekyll sites. You may change this to anything you like. -gem "minima", "~> 2.5" -# If you want to use GitHub Pages, remove the "gem "jekyll"" above and -# uncomment the line below. To upgrade, run `bundle update github-pages`. -gem "github-pages", "~> 226", group: :jekyll_plugins -# If you have any plugins, put them here! -group :jekyll_plugins do - gem "jekyll-feed", "~> 0.12" -end - -# Windows and JRuby does not include zoneinfo files, so bundle the tzinfo-data gem -# and associated library. -platforms :mingw, :x64_mingw, :mswin, :jruby do - gem "tzinfo", "~> 1.2" - gem "tzinfo-data" -end - -# Performance-booster for watching directories on Windows -gem "wdm", "~> 0.1.1", :platforms => [:mingw, :x64_mingw, :mswin] - -# Lock `http_parser.rb` gem to `v0.6.x` on JRuby builds since newer versions of the gem -# do not have a Java counterpart. -gem "http_parser.rb", "~> 0.6.0", :platforms => [:jruby] - -gem "webrick", "~> 1.7" diff --git a/Gemfile.lock b/Gemfile.lock deleted file mode 100644 index 532bba53..00000000 --- a/Gemfile.lock +++ /dev/null @@ -1,289 +0,0 @@ -GEM - remote: https://rubygems.org/ - specs: - activesupport (6.0.4.7) - concurrent-ruby (~> 1.0, >= 1.0.2) - 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jekyll-theme-modernist (0.2.0) - jekyll (> 3.5, < 5.0) - jekyll-seo-tag (~> 2.0) - jekyll-theme-primer (0.6.0) - jekyll (> 3.5, < 5.0) - jekyll-github-metadata (~> 2.9) - jekyll-seo-tag (~> 2.0) - jekyll-theme-slate (0.2.0) - jekyll (> 3.5, < 5.0) - jekyll-seo-tag (~> 2.0) - jekyll-theme-tactile (0.2.0) - jekyll (> 3.5, < 5.0) - jekyll-seo-tag (~> 2.0) - jekyll-theme-time-machine (0.2.0) - jekyll (> 3.5, < 5.0) - jekyll-seo-tag (~> 2.0) - jekyll-titles-from-headings (0.5.3) - jekyll (>= 3.3, < 5.0) - jekyll-watch (2.2.1) - listen (~> 3.0) - jemoji (0.12.0) - gemoji (~> 3.0) - html-pipeline (~> 2.2) - jekyll (>= 3.0, < 5.0) - kramdown (2.3.2) - rexml - kramdown-parser-gfm (1.1.0) - kramdown (~> 2.0) - liquid (4.0.3) - listen (3.7.1) - rb-fsevent (~> 0.10, >= 0.10.3) - rb-inotify (~> 0.9, >= 0.9.10) - mercenary (0.3.6) - minima (2.5.1) - jekyll (>= 3.5, < 5.0) - jekyll-feed (~> 0.9) - jekyll-seo-tag (~> 2.1) - minitest (5.15.0) - multipart-post (2.1.1) - nokogiri (1.13.4-x64-mingw-ucrt) - racc (~> 1.4) - octokit (4.22.0) - faraday (>= 0.9) - sawyer (~> 0.8.0, >= 0.5.3) - pathutil (0.16.2) - forwardable-extended (~> 2.6) - public_suffix (4.0.7) - racc (1.6.0) - rb-fsevent (0.11.1) - rb-inotify (0.10.1) - ffi (~> 1.0) - rexml (3.2.5) - rouge (3.26.0) - ruby2_keywords (0.0.5) - rubyzip (2.3.2) - safe_yaml (1.0.5) - sass (3.7.4) - sass-listen (~> 4.0.0) - sass-listen (4.0.0) - rb-fsevent (~> 0.9, >= 0.9.4) - rb-inotify (~> 0.9, >= 0.9.7) - sawyer (0.8.2) - addressable (>= 2.3.5) - faraday (> 0.8, < 2.0) - simpleidn (0.2.1) - unf (~> 0.1.4) - terminal-table (1.8.0) - unicode-display_width (~> 1.1, >= 1.1.1) - thread_safe (0.3.6) - typhoeus (1.4.0) - ethon (>= 0.9.0) - tzinfo (1.2.9) - thread_safe (~> 0.1) - unf (0.1.4) - unf_ext - unf_ext (0.0.8.1) - unicode-display_width (1.8.0) - webrick (1.7.0) - zeitwerk (2.5.4) - -PLATFORMS - x64-mingw-ucrt - -DEPENDENCIES - github-pages (~> 226) - http_parser.rb (~> 0.6.0) - jekyll-feed (~> 0.12) - minima (~> 2.5) - tzinfo (~> 1.2) - tzinfo-data - wdm (~> 0.1.1) - webrick (~> 1.7) - -BUNDLED WITH - 2.3.12 diff --git a/_config.yml b/_config.yml deleted file mode 100644 index 8510fc63..00000000 --- a/_config.yml +++ /dev/null @@ -1,52 +0,0 @@ -# Welcome to Jekyll! -# -# This config file is meant for settings that affect your whole blog, values -# which you are expected to set up once and rarely edit after that. If you find -# yourself editing this file very often, consider using Jekyll's data files -# feature for the data you need to update frequently. -# -# For technical reasons, this file is *NOT* reloaded automatically when you use -# 'bundle exec jekyll serve'. If you change this file, please restart the server process. -# -# If you need help with YAML syntax, here are some quick references for you: -# https://learn-the-web.algonquindesign.ca/topics/markdown-yaml-cheat-sheet/#yaml -# https://learnxinyminutes.com/docs/yaml/ -# -# Site settings -# These are used to personalize your new site. If you look in the HTML files, -# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on. -# You can create any custom variable you would like, and they will be accessible -# in the templates via {{ site.myvariable }}. - -title: CRIPT Scripts -email: cript@mit.edu -description: >- # this means to ignore newlines until "baseurl:" - A curated list of scripts and tools for interacting with CRIPT. -baseurl: "" # the subpath of your site, e.g. /blog -url: "https://criptscripts.org" # the base hostname & protocol for your site, e.g. http://example.com - -# Build settings -mardown: kramdown -remote_theme: just-the-docs/just-the-docs -plugins: - - jekyll-feed - -# Exclude from processing. -# The following items will not be processed, by default. -# Any item listed under the `exclude:` key here will be automatically added to -# the internal "default list". -# -# Excluded items can be processed by explicitly listing the directories or -# their entries' file path in the `include:` list. -# -exclude: - - scripts/typescript/node_modules -# - .sass-cache/ -# - .jekyll-cache/ -# - gemfiles/ -# - Gemfile -# - Gemfile.lock -# - vendor/bundle/ -# - vendor/cache/ -# - vendor/gems/ -# - vendor/ruby/ diff --git a/cript_graph/Olsen_rcbc.md b/cript_graph/Olsen_rcbc.md index 9a613b4b..05d3f55f 100644 --- a/cript_graph/Olsen_rcbc.md +++ b/cript_graph/Olsen_rcbc.md @@ -1,9 +1,3 @@ ---- -layout: default -title: Olsen Rod-Coil Block Copolymers CRIPT Graph -parent: CRIPT Graphs ---- - # Structure and Thermodynamics of Weakly Segregated Rod-Coil Block Copolymers [Research paper](https://pubs.acs.org/doi/10.1021/ma051468v) diff --git a/cript_graph/calabrese_rubber.md b/cript_graph/calabrese_rubber.md index 6336b4c8..9bc9e833 100644 --- a/cript_graph/calabrese_rubber.md +++ b/cript_graph/calabrese_rubber.md @@ -1,9 +1,3 @@ ---- -layout: default -title: Calabrese Rubber CRIPT Graph -parent: CRIPT Graphs ---- - # Development of a Rubber Recycling Process Based on a Single-Component Interfacial Adhesive [Research paper](https://pubs.acs.org/doi/abs/10.1021/acsapm.0c01343) written by diff --git a/cript_graph/cao_protein.md b/cript_graph/cao_protein.md index e92c5993..0adad5d2 100644 --- a/cript_graph/cao_protein.md +++ b/cript_graph/cao_protein.md @@ -1,9 +1,3 @@ ---- -layout: default -title: Cao Protein -parent: CRIPT Graphs ---- - # Strengthening and Toughening of Protein-Based Thermosets via Intermolecular Self-Assembly [Research paper](https://pubs.acs.org/doi/10.1021/acs.biomac.2c00372) written by Yiping Cao and Bradley D. Olsen. diff --git a/cript_graph/index.md b/cript_graph/index.md index c826fd8a..86e75d6d 100644 --- a/cript_graph/index.md +++ b/cript_graph/index.md @@ -1,14 +1,2 @@ ---- -layout: default -title: CRIPT Graphs -has_children: true ---- - - - - - -# CRIPT Graphs - CRIPT Graphs are a series of diagrams depicting the relationship of CRIPT nodes and how they interact with each other. They are also great examples that show translation of research to paper to [CRIPT Data model](https://pubs.acs.org/doi/suppl/10.1021/acscentsci.3c00011/suppl_file/oc3c00011_si_001.pdf). diff --git a/cript_graph/xia_brush_polymers.md b/cript_graph/xia_brush_polymers.md index 772d0650..b1c9a64b 100644 --- a/cript_graph/xia_brush_polymers.md +++ b/cript_graph/xia_brush_polymers.md @@ -1,9 +1,3 @@ ---- -layout: default -title: Xia Brush Polymer CRIPT Graph -parent: CRIPT Graphs ---- - # Efficient Synthesis of Narrowly Dispersed Brush Copolymers and Study of Their Assemblies: The Importance of Side Chain Arrangement [Research paper](https://pubs.acs.org/doi/full/10.1021/ja908379q) written by diff --git a/cript_graph_json/calabrese_rubber.md b/cript_graph_json/calabrese_rubber.md index 1097c39a..622088a3 100644 --- a/cript_graph_json/calabrese_rubber.md +++ b/cript_graph_json/calabrese_rubber.md @@ -1,9 +1,3 @@ ---- -layout: default -title: Calabrese Rubber CRIPT JSON -parent: CRIPT JSON ---- - # Development of a Rubber Recycling Process Based on a Single-Component Interfacial Adhesive [Research paper](https://pubs.acs.org/doi/abs/10.1021/acsapm.0c01343) written by diff --git a/cript_graph_json/cao_protein.md b/cript_graph_json/cao_protein.md index 522db088..a2eccc1b 100644 --- a/cript_graph_json/cao_protein.md +++ b/cript_graph_json/cao_protein.md @@ -1,9 +1,3 @@ ---- -layout: default -title: Cao Protein CRIPT JSON -parent: CRIPT JSON ---- - # Strengthening and Toughening of Protein-Based Thermosets via Intermolecular Self-Assembly [Research paper](https://pubs.acs.org/doi/10.1021/acs.biomac.2c00372) written by Yiping Cao and Bradley D. Olsen. diff --git a/cript_graph_json/index.md b/cript_graph_json/index.md index d3c39ad7..78b560bd 100644 --- a/cript_graph_json/index.md +++ b/cript_graph_json/index.md @@ -1,13 +1 @@ ---- -layout: default -title: CRIPT JSON -has_children: true ---- - - - - - -# CRIPT JSON - Examples of the CRIPT JSON file is a representation of the CRIPT [CRIPT Data Model](https://pubs.acs.org/doi/10.1021/acscentsci.3c00011) in a JSON format. diff --git a/cript_sheets/calabrese_rubber.md b/cript_sheets/calabrese_rubber.md index 05c84012..6e16fa8d 100644 --- a/cript_sheets/calabrese_rubber.md +++ b/cript_sheets/calabrese_rubber.md @@ -1,9 +1,3 @@ ---- -layout: default -title: Calabrese Rubber CRIPT Sheet -parent: Excel files ---- - # Development of a Rubber Recycling Process Based on a Single-Component Interfacial Adhesive [Research paper](https://pubs.acs.org/doi/abs/10.1021/acsapm.0c01343) written by diff --git a/cript_sheets/cao_protein.md b/cript_sheets/cao_protein.md index f46d0034..fcf25b16 100644 --- a/cript_sheets/cao_protein.md +++ b/cript_sheets/cao_protein.md @@ -1,9 +1,3 @@ ---- -layout: default -title: Cao Protein CRIPT Sheet -parent: Excel files ---- - # Development of a Rubber Recycling Process Based on a Single-Component Interfacial Adhesive [Research paper](https://pubs.acs.org/doi/10.1021/acs.biomac.2c00372) written by Yiping Cao and Bradley D. Olsen. diff --git a/cript_sheets/cript_template.md b/cript_sheets/cript_template.md index 95342eef..051f8389 100644 --- a/cript_sheets/cript_template.md +++ b/cript_sheets/cript_template.md @@ -1,9 +1,3 @@ ---- -layout: default -title: CRIPT Template -parent: Excel files ---- - # CRIPT Template [CRIPT Template](https://github.com/C-Accel-CRIPT/cript-excel-uploader/releases/latest/download/CRIPT_template.xlsx) that can be paired with the [CRIPT Excel Uploader](https://c-accel-cript.github.io/cript-excel-uploader/) to upload to [CRIPT](https://criptapp.org). The [CRIPT Template](https://github.com/C-Accel-CRIPT/cript-excel-uploader/releases/latest/download/CRIPT_template.xlsx) also comes with a small [autofill feature](https://c-accel-cript.github.io/cript-excel-uploader/excel_template/) that can be paired with [Excel Online](https://c-accel-cript.github.io/cript-excel-uploader/excel_template/#excel-online). diff --git a/cript_sheets/example_cript_template.md b/cript_sheets/example_cript_template.md index 0bc3d4c9..d415e5d5 100644 --- a/cript_sheets/example_cript_template.md +++ b/cript_sheets/example_cript_template.md @@ -1,9 +1,3 @@ ---- -layout: default -title: CRIPT Template Example -parent: Excel files ---- - # CRIPT Template Example [CRIPT Template Example](https://github.com/C-Accel-CRIPT/cript-excel-uploader/releases/latest/download/Example_CRIPT_template.xlsx) that can be paired with the [CRIPT Excel Uploader](https://c-accel-cript.github.io/cript-excel-uploader/) to upload to [CRIPT](https://criptapp.org). This is a simple CRIPT Template Example that uses the [CRIPT Template](./cript_template.md) and has a valid example for every field and page of the [CRIPT Template](./cript_template.md). diff --git a/cript_sheets/index.md b/cript_sheets/index.md index 5f9d8ba2..40286abd 100644 --- a/cript_sheets/index.md +++ b/cript_sheets/index.md @@ -1,13 +1 @@ ---- -layout: default -title: Excel files -has_children: true ---- - - - - - -# CRIPT Sheets - CRIPT Excel files of all different types that have been used to upload polymer data to [CRIPT](https://criptapp.org) using either the [CRIPT Python SDK](https://c-accel-cript.github.io/cript/) or the [CRIPT Excel Uploader](https://c-accel-cript.github.io/cript-excel-uploader/) tool. diff --git a/cript_sheets/property_method.md b/cript_sheets/property_method.md index 186ae0bf..f47ee094 100644 --- a/cript_sheets/property_method.md +++ b/cript_sheets/property_method.md @@ -1,9 +1,3 @@ ---- -layout: default -title: Material Property Methods -parent: Excel files ---- - # CRIPT Material Property Methods [Excel file](./example_excel_files/property_methods_template.xlsx) used with the [CRIPT Excel Uploader](https://c-accel-cript.github.io/cript-excel-uploader/) to upload material property methods. diff --git a/cript_sheets/tensile_data.md b/cript_sheets/tensile_data.md index 37f27a27..af223493 100644 --- a/cript_sheets/tensile_data.md +++ b/cript_sheets/tensile_data.md @@ -1,9 +1,3 @@ ---- -layout: default -title: Tensile Data -parent: Excel files ---- - # Tensile Data [Excel file](./example_excel_files/weakstrongbond.xlsx) used with the [CRIPT Excel Uploader](https://c-accel-cript.github.io/cript-excel-uploader/) to upload tensile data collected for a series of mechano-chemical gels. diff --git a/cript_sheets/use_existing.md b/cript_sheets/use_existing.md index 9e3cd822..abffd0b9 100644 --- a/cript_sheets/use_existing.md +++ b/cript_sheets/use_existing.md @@ -1,9 +1,3 @@ ---- -layout: default -title: use_existing Materials Example -parent: Excel files ---- - # use_existing Materials Example Typically when running the [Excel Uploader](https://github.com/C-Accel-CRIPT/cript-excel-uploader) with an Excel file, it always creates new materials from each row of input. However, this raises a question of what if the material already exists within our project and we just want to add more characteristics to it. For that instance we can use the `use_existing` column withing the CRIPT Excel File. Two good example of it being used can be found below. You can learn more about the Excel Uploader `use_existing` field from the [Excel Uploader documentation](https://c-accel-cript.github.io/cript-excel-uploader/individual_sheets/). diff --git a/index.md b/index.md deleted file mode 100644 index 68e152a3..00000000 --- a/index.md +++ /dev/null @@ -1,46 +0,0 @@ ---- -layout: default -title: Home -nav_order: 1 -has_children: false ---- - - - - -
- - CRIPT Scripts logo - -
- -CRIPT Scripts is a curated list of examples and tools for interacting with the [CRIPT](https://criptapp.org) platform. - -## [CRIPT](https://criptapp.org) Examples: -* [Python Scripts](scripts/python/index.md) -created with the [CRIPT Python SDK](https://pypi.org/project/cript/) - -* [TypeScript Scripts](scripts/typescript/index.md) - -* [Excel files](./cript_sheets/index.md) -used with the [CRIPT Excel Uploader](https://c-accel-cript.github.io/cript-excel-uploader/) - -* [CRIPT Graphs](./cript_graph/index.md) -that translates research into the [CRIPT Data Model](https://pubs.acs.org/doi/10.1021/acscentsci.3c00011) - -* [CRIPT Graph JSON](./cript_graph_json/index.md) -the shows the CRIPT graph in JSON format - - -## [CRIPT](https://criptapp.org) Resources: -* [CRIPT research paper](https://pubs.acs.org/doi/10.1021/acscentsci.3c00011) - -* [CRIPT data model](https://pubs.acs.org/doi/suppl/10.1021/acscentsci.3c00011/suppl_file/oc3c00011_si_001.pdf) - -* [CRIPT graph template](./cript_graph/graph_ppt/CRIPT_Data_Structure_Template.pptx) - - ---- - -For more information please visit the - [CRIPT Scripts GitHub page](https://github.com/C-Accel-CRIPT/criptscripts) diff --git a/scripts/index.md b/scripts/index.md deleted file mode 100644 index e3b5abbe..00000000 --- a/scripts/index.md +++ /dev/null @@ -1,13 +0,0 @@ ---- -layout: default -title: CRIPT Scripts -has_children: true ---- - - - - - -# CRIPT Scripts - -Example script used to upload polymer data to the [CRIPT platform](https://criptapp.org/) diff --git a/scripts/python/bibliography creator (RIS).md b/scripts/python/bibliography creator (RIS).md deleted file mode 100644 index e2e4f769..00000000 --- a/scripts/python/bibliography creator (RIS).md +++ /dev/null @@ -1,18 +0,0 @@ ---- -layout: default -title: Bibliography Creator (RIS) -parent: Python Scripts -grand_parent: CRIPT Scripts ---- - -# Bibliography Creator (RIS) -The bibliography converter (RIS) script is a Python script written with the [CRIPT Python SDK](https://pypi.org/project/cript/) that creates [CRIPT references](https://criptapp.org/reference/) from a text file containing a RIS style bibliography. - -## Python Script -* [script.py](python_sdk_scripts/bibliography_creator_ris/script.py) - - -## Supplemental File -* [sample1.ris.txt](python_sdk_scripts/bibliography_creator_ris/sample1.ris.txt) -* [sample2.ris](python_sdk_scripts/bibliography_creator_ris/sample2.ris) -* [test_RIS.py](python_sdk_scripts/bibliography_creator_ris/test_RIS.py) diff --git a/scripts/python/bibliography creator.md b/scripts/python/bibliography creator.md deleted file mode 100644 index ae2c1941..00000000 --- a/scripts/python/bibliography creator.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -layout: default -title: Bibliography Creator -parent: Python Scripts -grand_parent: CRIPT Scripts ---- - -# Bibliography Creator - -The bibliography converter script is a Python script written with the [CRIPT Python SDK](https://github.com/C-Accel-CRIPT/cript) that creates [CRIPT references](https://criptapp.org/reference/) from a text file containing a bibliography. - -## Python Script -* [script.py](python_sdk_scripts/bibliography_creator/script.py) - - -## Supplemental File -* [sample.bib.txt](python_sdk_scripts/bibliography_creator/sample.bib.txt) -* [sample2.bib.txt](python_sdk_scripts/bibliography_creator/sample2.bib.txt) -* [test_script.py](python_sdk_scripts/bibliography_creator/test_script.py) diff --git a/scripts/python/full_experiment.md b/scripts/python/full_experiment.md deleted file mode 100644 index 81f876d7..00000000 --- a/scripts/python/full_experiment.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -layout: default -title: Full Experiment -parent: Python Scripts -grand_parent: CRIPT Scripts ---- - -# Full Experiment - -This is a Python script using [CRIPT Python SDK](https://c-accel-cript.github.io/cript/) to upload an experiment regarding the Anionic Polymerization of styrene. - -## Python Script - -* [full_experiment.py](python_sdk_scripts/full_experiment/full_experiment.py) - -## Supplemental Files -* [calibration.txt](python_sdk_scripts/full_experiment/test_data/calibration.txt) -* [NMR.txt](python_sdk_scripts/full_experiment/test_data/NMR.txt) -* [sec.txt](python_sdk_scripts/full_experiment/test_data/sec.txt) diff --git a/scripts/python/index.md b/scripts/python/index.md index 92153485..ff0b0bc8 100644 --- a/scripts/python/index.md +++ b/scripts/python/index.md @@ -1,15 +1,2 @@ ---- -layout: default -title: Python Scripts -parent: CRIPT Scripts -has_children: true ---- - - - - - -# Python CRIPT Scripts - Example Python Script built with the [CRIPT Python SDK](https://c-accel-cript.github.io/cript/) to upload polymer data to [CRIPT](https://criptapp.org/) diff --git a/scripts/python/AFRL.md b/scripts/python/python_sdk_scripts/AFRL/AFRL.md similarity index 60% rename from scripts/python/AFRL.md rename to scripts/python/python_sdk_scripts/AFRL/AFRL.md index 10bffabe..fdb706a2 100644 --- a/scripts/python/AFRL.md +++ b/scripts/python/python_sdk_scripts/AFRL/AFRL.md @@ -1,10 +1,3 @@ ---- -layout: default -title: Air Force Research Lab Python Script -parent: Python Scripts -grand_parent: CRIPT Scripts ---- - # Air Force Research Lab Python Script The Air Force Research Lab (AFRL) Python script is a way to programmatically upload data from a @@ -14,9 +7,9 @@ converting it to a CRIPT node, and uploading it to CRIPT one node at a time. ## Python Script -* [upload.py](./python_sdk_scripts/AFRL/upload.py) +* [upload.py](./upload.py) ## Supplemental File -* [requirements.txt](./python_sdk_scripts/AFRL/requirements.txt) -* [config.yaml](./python_sdk_scripts/AFRL/config.yaml) +* [requirements.txt](./requirements.txt) +* [config.yaml](./config.yaml) diff --git a/scripts/python/python_sdk_scripts/bibliography_creator/bibliography creator.md b/scripts/python/python_sdk_scripts/bibliography_creator/bibliography creator.md new file mode 100644 index 00000000..a8203cc3 --- /dev/null +++ b/scripts/python/python_sdk_scripts/bibliography_creator/bibliography creator.md @@ -0,0 +1 @@ +The bibliography converter script is a Python script written with the [CRIPT Python SDK](https://github.com/C-Accel-CRIPT/cript) that creates [CRIPT references](https://app.criptapp.org/reference/) from a text file containing a bibliography. diff --git a/scripts/python/python_sdk_scripts/bibliography_creator_ris/bibliography creator (RIS).md b/scripts/python/python_sdk_scripts/bibliography_creator_ris/bibliography creator (RIS).md new file mode 100644 index 00000000..1da77f43 --- /dev/null +++ b/scripts/python/python_sdk_scripts/bibliography_creator_ris/bibliography creator (RIS).md @@ -0,0 +1,2 @@ +# Bibliography Creator (RIS) +The bibliography converter (RIS) script is a Python script written with the [CRIPT Python SDK](https://pypi.org/project/cript/) that creates [CRIPT references](https://app.criptapp.org/reference/) from a text file containing a RIS style bibliography. diff --git a/scripts/python/create_materials.md b/scripts/python/python_sdk_scripts/create_materials/create_materials.md similarity index 50% rename from scripts/python/create_materials.md rename to scripts/python/python_sdk_scripts/create_materials/create_materials.md index 5e3fc778..25a1d3b6 100644 --- a/scripts/python/create_materials.md +++ b/scripts/python/python_sdk_scripts/create_materials/create_materials.md @@ -1,14 +1,3 @@ ---- -layout: default -title: Create Materials -parent: Python Scripts -grand_parent: CRIPT Scripts ---- - # Create Materials -[Python Script](python_sdk_scripts/create_materials/create_materials.py) using [CRIPT Python SDK](https://c-accel-cript.github.io/cript/) to upload [CRIPT materials](http://criptapp.org/material). - -## Python Script - -* [create_materials.py](python_sdk_scripts/create_materials/create_materials.py) +[Python Script](python_sdk_scripts/create_materials/create_materials.py) using [CRIPT Python SDK](https://c-accel-cript.github.io/cript/) to upload [CRIPT materials](http://criptapp.org/material). \ No newline at end of file diff --git a/scripts/python/python_sdk_scripts/full_experiment/full_experiment.md b/scripts/python/python_sdk_scripts/full_experiment/full_experiment.md new file mode 100644 index 00000000..afdec61d --- /dev/null +++ b/scripts/python/python_sdk_scripts/full_experiment/full_experiment.md @@ -0,0 +1,3 @@ +# Full Experiment + +This is a Python script using [CRIPT Python SDK](https://c-accel-cript.github.io/cript/) to upload an experiment regarding the Anionic Polymerization of styrene. \ No newline at end of file diff --git a/scripts/python/python_sdk_scripts/simulation_procedure/simulation_procedure.md b/scripts/python/python_sdk_scripts/simulation_procedure/simulation_procedure.md new file mode 100644 index 00000000..a5dd0d0c --- /dev/null +++ b/scripts/python/python_sdk_scripts/simulation_procedure/simulation_procedure.md @@ -0,0 +1,3 @@ +# Simulation Procedure Script + +A Python script built with [CRIPT Python SDK](https://pypi.org/project/cript/) intended to upload an entire simulation procedure. This includes everything from force-field assignment, equilibration, and measurements. \ No newline at end of file diff --git a/scripts/python/simulation_procedure.md b/scripts/python/simulation_procedure.md deleted file mode 100644 index f6ad8f30..00000000 --- a/scripts/python/simulation_procedure.md +++ /dev/null @@ -1,16 +0,0 @@ ---- -layout: default -title: Simulation Procedure Script -parent: Python Scripts -grand_parent: CRIPT Scripts ---- - -# Simulation Procedure Script - -A Python script built with [CRIPT Python SDK](https://pypi.org/project/cript/) intended to upload an entire simulation procedure. This includes everything from force-field assignment, equilibration, and measurements. - -## Python Script -* [upload_cript.py](python_sdk_scripts/simulation_procedure/upload_cript.py) - -## Supplemental Files -* [G-24DFS](https://github.com/C-Accel-CRIPT/criptscripts/tree/master/scripts/python_sdk_scripts/simulation_procedure/G-24DFS) diff --git a/scripts/typescript/index.md b/scripts/typescript/index.md deleted file mode 100644 index f9ad636f..00000000 --- a/scripts/typescript/index.md +++ /dev/null @@ -1,16 +0,0 @@ ---- -layout: default -title: TypeScript Scripts -parent: CRIPT Scripts -has_children: true ---- - - - - - -# TS CRIPT Scripts - -TypeScript script examples to prepare ingestion into [CRIPT](https://criptapp.org/). - - diff --git a/scripts/typescript/src/afrl/index.md b/scripts/typescript/src/afrl/index.md deleted file mode 100644 index bb0c284f..00000000 --- a/scripts/typescript/src/afrl/index.md +++ /dev/null @@ -1,14 +0,0 @@ ---- -layout: default -title: Air Force Research Lab TypeScript Script -parent: TypeScript Scripts -grand_parent: CRIPT Scripts ---- - -# AFRL CSV to JSON script - -*note: this script is WIP* - -This script converts the AFRL CSV file into a unique JSON file. The file can be uploaded at once as a single project into CRIPT. - -See source code: [Link to TypeScript source code](https://github.com/C-Accel-CRIPT/criptscripts/tree/master/scripts/typescript/src/afrl) diff --git a/scripts/typescript/src/bcdb/index.md b/scripts/typescript/src/bcdb/index.md deleted file mode 100644 index 580aae04..00000000 --- a/scripts/typescript/src/bcdb/index.md +++ /dev/null @@ -1,14 +0,0 @@ ---- -layout: default -title: BCBD TypeScript Script -parent: TypeScript Scripts -grand_parent: CRIPT Scripts ---- - -# BCBD XLSX to JSON script - -*note: this script is WIP* - -This script converts the BCDB XLSX and into a unique JSON file. The file can be uploaded at once as a single project into CRIPT. - -See source code: [Link to TypeScript source code](https://github.com/C-Accel-CRIPT/criptscripts/tree/master/scripts/typescript/src/bcdb) diff --git a/scripts/typescript/src/pppdb/generate-json.md b/scripts/typescript/src/pppdb/generate-json.md index c2c52396..e69de29b 100644 --- a/scripts/typescript/src/pppdb/generate-json.md +++ b/scripts/typescript/src/pppdb/generate-json.md @@ -1,12 +0,0 @@ ---- -layout: default -title: PPPDB TypeScript Script -parent: TypeScript Scripts -grand_parent: CRIPT Scripts ---- - -# PPPDB XLSX to JSON script - -This script converts the PPPDB XLSX and into a unique JSON file. The file can be uploaded at once as a single project into CRIPT. - -See source code: [Link to TypeScript source code](https://github.com/C-Accel-CRIPT/criptscripts/tree/master/scripts/typescript/src/pppdb) diff --git a/scripts/typescript/src/rcbc/index.md b/scripts/typescript/src/rcbc/index.md deleted file mode 100644 index fe3b5b61..00000000 --- a/scripts/typescript/src/rcbc/index.md +++ /dev/null @@ -1,14 +0,0 @@ ---- -layout: default -title: RCBC TypeScript Script -parent: TypeScript Scripts -grand_parent: CRIPT Scripts ---- - -# RCBC to JSON script - -*note: this script is WIP* - -This script converts the RCBC graph and into a unique JSON file. The file can be uploaded at once as a single project into CRIPT. - -See source code: [Link to TypeScript source code](https://github.com/C-Accel-CRIPT/criptscripts/tree/master/scripts/typescript/src/rcbc)