diff --git a/_modules/alab_management/alarm.html b/_modules/alab_management/alarm.html index 9f8b0f8d..2d9f7ad9 100644 --- a/_modules/alab_management/alarm.html +++ b/_modules/alab_management/alarm.html @@ -172,7 +172,7 @@
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    • diff --git a/_modules/alab_management/builders/experimentbuilder.html b/_modules/alab_management/builders/experimentbuilder.html index 850d7be1..e2750004 100644 --- a/_modules/alab_management/builders/experimentbuilder.html +++ b/_modules/alab_management/builders/experimentbuilder.html @@ -172,7 +172,7 @@
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    • diff --git a/_modules/alab_management/builders/samplebuilder.html b/_modules/alab_management/builders/samplebuilder.html index 1cb61605..42fe2963 100644 --- a/_modules/alab_management/builders/samplebuilder.html +++ b/_modules/alab_management/builders/samplebuilder.html @@ -172,7 +172,7 @@
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    • diff --git a/_modules/alab_management/config.html b/_modules/alab_management/config.html index 560a4168..9d07b5a2 100644 --- a/_modules/alab_management/config.html +++ b/_modules/alab_management/config.html @@ -172,7 +172,7 @@
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    • diff --git a/_modules/alab_management/device_manager.html b/_modules/alab_management/device_manager.html index 2ab745f9..23921dc9 100644 --- a/_modules/alab_management/device_manager.html +++ b/_modules/alab_management/device_manager.html @@ -172,7 +172,7 @@
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    • diff --git a/_modules/alab_management/device_view/dbattributes.html b/_modules/alab_management/device_view/dbattributes.html index 1c3f8115..c8804f1e 100644 --- a/_modules/alab_management/device_view/dbattributes.html +++ b/_modules/alab_management/device_view/dbattributes.html @@ -172,7 +172,7 @@
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    • diff --git a/_modules/alab_management/device_view/device.html b/_modules/alab_management/device_view/device.html index 4b617717..af95cad0 100644 --- a/_modules/alab_management/device_view/device.html +++ b/_modules/alab_management/device_view/device.html @@ -172,7 +172,7 @@
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    • diff --git a/_modules/alab_management/experiment_manager.html b/_modules/alab_management/experiment_manager.html index 5eb8951f..c9f05145 100644 --- a/_modules/alab_management/experiment_manager.html +++ b/_modules/alab_management/experiment_manager.html @@ -172,7 +172,7 @@
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    • diff --git a/_modules/alab_management/lab_view.html b/_modules/alab_management/lab_view.html index 4e9eb65f..566b13ad 100644 --- a/_modules/alab_management/lab_view.html +++ b/_modules/alab_management/lab_view.html @@ -172,7 +172,7 @@
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    • diff --git a/_modules/alab_management/logger.html b/_modules/alab_management/logger.html index 7011625e..fe9994b8 100644 --- a/_modules/alab_management/logger.html +++ b/_modules/alab_management/logger.html @@ -172,7 +172,7 @@
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    • diff --git a/_modules/alab_management/sample_view/completed_sample_view.html b/_modules/alab_management/sample_view/completed_sample_view.html index bbfda31f..415496a9 100644 --- a/_modules/alab_management/sample_view/completed_sample_view.html +++ b/_modules/alab_management/sample_view/completed_sample_view.html @@ -172,7 +172,7 @@
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    • diff --git a/_modules/alab_management/task_manager/task_manager.html b/_modules/alab_management/task_manager/task_manager.html index f1782f23..ea808f32 100644 --- a/_modules/alab_management/task_manager/task_manager.html +++ b/_modules/alab_management/task_manager/task_manager.html @@ -172,7 +172,7 @@
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    • diff --git a/_modules/alab_management/user_input.html b/_modules/alab_management/user_input.html index 07e07f29..8d18a522 100644 --- a/_modules/alab_management/user_input.html +++ b/_modules/alab_management/user_input.html @@ -172,7 +172,7 @@
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    • diff --git a/_modules/index.html b/_modules/index.html index 16171d15..890a06a6 100644 --- a/_modules/index.html +++ b/_modules/index.html @@ -172,7 +172,7 @@
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    • diff --git a/_sources/test.md b/_sources/test.md index 6fdfe49d..a98c1352 100644 --- a/_sources/test.md +++ b/_sources/test.md @@ -1,4 +1,4 @@ -# Testing for Alab Definition +# Testing for AlabOS Project To ensure a seamless installation and robust testing of the software system, several key processes have been implemented. diff --git a/advance_topics.html b/advance_topics.html index dd8624c6..3ba7a456 100644 --- a/advance_topics.html +++ b/advance_topics.html @@ -46,7 +46,7 @@ - + @@ -171,7 +171,7 @@
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    • @@ -426,7 +426,7 @@

    Advance Topics

    next

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    • @@ -465,7 +465,7 @@

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    • diff --git a/genindex.html b/genindex.html index 34356782..c9884c19 100644 --- a/genindex.html +++ b/genindex.html @@ -172,7 +172,7 @@
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  • Advance Topics
  • Development
    • diff --git a/searchindex.js b/searchindex.js index 3094332f..f3b980a3 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["advance_topics", "alab_management", "alab_management.alarm", "alab_management.builders", "alab_management.builders.experimentbuilder", "alab_management.builders.samplebuilder", "alab_management.config", "alab_management.device_manager", "alab_management.device_view", "alab_management.device_view.dbattributes", "alab_management.device_view.device", "alab_management.device_view.device_view", "alab_management.experiment_manager", "alab_management.experiment_view", "alab_management.experiment_view.completed_experiment_view", "alab_management.experiment_view.experiment", "alab_management.experiment_view.experiment_view", "alab_management.lab_view", "alab_management.logger", "alab_management.resource_manager", "alab_management.resource_manager.enums", "alab_management.resource_manager.resource_manager", 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"alab_management.task_actor module": [[27, "alab-management-task-actor-module"]], "alab_management.task_manager package": [[28, "alab-management-task-manager-package"]], "alab_management.task_manager.task_manager module": [[29, "module-alab_management.task_manager.task_manager"]], "alab_management.task_view package": [[30, "alab-management-task-view-package"]], "alab_management.task_view.completed_task_view module": [[31, "module-alab_management.task_view.completed_task_view"]], "alab_management.task_view.task module": [[32, "module-alab_management.task_view.task"]], "alab_management.task_view.task_enums module": [[33, "module-alab_management.task_view.task_enums"]], "alab_management.task_view.task_view module": [[34, "module-alab_management.task_view.task_view"]], "alab_management.user_input module": [[35, "module-alab_management.user_input"]], "Best Practices": [[36, "best-practices"]], "1. Minimizing duration for time-sensitive samples": [[36, "minimizing-duration-for-time-sensitive-samples"]], "Example system:": [[36, "example-system"]], "Solution implementation for the system:": [[36, "solution-implementation-for-the-system"]], "2. Sharing device/instrument between automated workflow and manual usage": [[36, "sharing-device-instrument-between-automated-workflow-and-manual-usage"]], "Case study: SEM": [[36, "case-study-sem"]], "Solution: Pausing SEM": [[36, "solution-pausing-sem"]], "3. Cancelling samples and removing them out of the automated workflow gracefully": [[36, "cancelling-samples-and-removing-them-out-of-the-automated-workflow-gracefully"]], "Development": [[37, "development"]], "Development Environment Setup": [[37, "development-environment-setup"]], "CI System": [[37, "ci-system"]], "Git commit rules": [[37, "git-commit-rules"]], "Defining devices and sample positions": [[38, "defining-devices-and-sample-positions"]], "Implementing BoxFurnace": [[38, "implementing-boxfurnace"]], "Implementing all abstract methods": [[38, "implementing-all-abstract-methods"]], "Defining the device interface": [[38, "defining-the-device-interface"]], "Setting up the message": [[38, "setting-up-the-message"]], "Error handling": [[38, "error-handling"], [45, "error-handling"]], "Mocking the device": [[38, "mocking-the-device"]], "Registering the device": [[38, "registering-the-device"]], "Registering standalone sample positions": [[38, "registering-standalone-sample-positions"]], "What\u2019s next": [[38, "what-s-next"], [40, "what-s-next"], [42, "what-s-next"], [45, "what-s-next"]], "Overview": [[39, "overview"]], "Terminology": [[39, "terminology"]], "Modules": [[39, "modules"]], "Lab status": [[39, "lab-status"]], "Experiment manager": [[39, "experiment-manager"]], "Task manager": [[39, "task-manager"]], "Task actor": [[39, "task-actor"]], "Data Storage": [[39, "data-storage"]], "Indices and tables": [[39, "indices-and-tables"]], "Installation": [[40, "installation"]], "Prerequisites": [[40, "prerequisites"]], "MongoDB": [[40, "mongodb"]], "RabbitMQ": [[40, "rabbitmq"]], "Install via pip": [[40, "install-via-pip"]], "Install from source code": [[40, "install-from-source-code"]], "alab_management": [[41, "alab-management"]], "Set up configuration folder": [[42, "set-up-configuration-folder"]], "Initiate a project via command line": [[42, "initiate-a-project-via-command-line"]], "Folder structure": [[42, "folder-structure"]], "Config file": [[42, "config-file"]], "Launching lab": [[43, "launching-lab"]], "Enable simulation mode": [[43, "enable-simulation-mode"]], "Config file location": [[43, "config-file-location"]], "Set up / clean up the lab": [[43, "set-up-clean-up-the-lab"]], "Start the lab and the worker": [[43, "start-the-lab-and-the-worker"]], "Summary": [[43, "summary"]], "Submitting the synthesis experiments": [[44, "submitting-the-synthesis-experiments"]], "Builder class": [[44, "builder-class"]], "Add samples": [[44, "add-samples"]], "Add tasks": [[44, "add-tasks"]], "Add task to the sample": [[44, "add-task-to-the-sample"]], "Example: Build the alab experiment with 16 samples": [[44, "example-build-the-alab-experiment-with-16-samples"]], "Submit the experiment": [[44, "submit-the-experiment"]], "See the status of the experiment": [[44, "see-the-status-of-the-experiment"]], "Check the status via API": [[44, "check-the-status-via-api"]], "Advanced submission": [[44, "advanced-submission"]], "Defining tasks": [[45, "defining-tasks"]], "Task parameters": [[45, "task-parameters"]], "Parameter validation": [[45, "parameter-validation"]], "Run method": [[45, "run-method"]], "Samples under the task": [[45, "samples-under-the-task"]], "Requesting resources": [[45, "requesting-resources"]], "Result storage": [[45, "result-storage"]], "Large file storage": [[45, "large-file-storage"]], "Validate the output": [[45, "validate-the-output"]], "Set dashboard message": [[45, "set-dashboard-message"]], "Run subtask": [[45, "run-subtask"]], "Unhandled error": [[45, "unhandled-error"]], "Mocking": [[45, "mocking"]], "Register the task": [[45, "register-the-task"]], "Lifecycle of a task": [[45, "lifecycle-of-a-task"]], "Testing for Alab Definition": [[46, "testing-for-alab-definition"]], "Methodology": [[46, "methodology"]], "Example": [[46, "example"]], "Device Class: BoxFurnace": [[46, "device-class-boxfurnace"]], "Fixtures": [[46, "fixtures"]], "Tests": [[46, "tests"]], "Tutorial": [[47, "tutorial"]], "Automated solid-state synthesis": [[47, "automated-solid-state-synthesis"]], "The structure of the tutorial": [[47, "the-structure-of-the-tutorial"]]}, "indexentries": {"alab_management": [[1, "module-alab_management"]], "module": [[1, "module-alab_management"], [2, "module-alab_management.alarm"], [3, "module-alab_management.builders"], [4, "module-alab_management.builders.experimentbuilder"], [5, "module-alab_management.builders.samplebuilder"], [6, "module-alab_management.config"], [7, "module-alab_management.device_manager"], [8, "module-alab_management.device_view"], [9, "module-alab_management.device_view.dbattributes"], [10, "module-alab_management.device_view.device"], [11, "module-alab_management.device_view.device_view"], [12, "module-alab_management.experiment_manager"], [13, "module-alab_management.experiment_view"], [14, "module-alab_management.experiment_view.completed_experiment_view"], [15, 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method)": [[6, "alab_management.config.AlabOSConfig.is_sim_mode"]], "path (alabosconfig property)": [[6, "alab_management.config.AlabOSConfig.path"]], "set_item() (alabosconfig method)": [[6, "alab_management.config.AlabOSConfig.set_item"]], "devicemanager (class in alab_management.device_manager)": [[7, "alab_management.device_manager.DeviceManager"]], "devicemethodcallstate (class in alab_management.device_manager)": [[7, "alab_management.device_manager.DeviceMethodCallState"]], "devicewrapper (class in alab_management.device_manager)": [[7, "alab_management.device_manager.DeviceWrapper"]], "devicewrapper.devicemethodwrapper (class in alab_management.device_manager)": [[7, "alab_management.device_manager.DeviceWrapper.DeviceMethodWrapper"]], "devicesclient (class in alab_management.device_manager)": [[7, "alab_management.device_manager.DevicesClient"]], "failure (methodcallstatus attribute)": [[7, "alab_management.device_manager.MethodCallStatus.FAILURE"]], "in_progress (methodcallstatus attribute)": [[7, "alab_management.device_manager.MethodCallStatus.IN_PROGRESS"]], "methodcallstatus (class in alab_management.device_manager)": [[7, "alab_management.device_manager.MethodCallStatus"]], "pending (methodcallstatus attribute)": [[7, "alab_management.device_manager.MethodCallStatus.PENDING"]], "success (methodcallstatus attribute)": [[7, "alab_management.device_manager.MethodCallStatus.SUCCESS"]], "alab_management.device_manager": [[7, "module-alab_management.device_manager"]], "call() (devicesclient method)": [[7, "alab_management.device_manager.DevicesClient.call"]], "create_device_wrapper() (devicesclient method)": [[7, "alab_management.device_manager.DevicesClient.create_device_wrapper"]], "future (devicemethodcallstate attribute)": [[7, "alab_management.device_manager.DeviceMethodCallState.future"]], "last_updated (devicemethodcallstate attribute)": [[7, "alab_management.device_manager.DeviceMethodCallState.last_updated"]], "method (devicewrapper.devicemethodwrapper property)": [[7, "alab_management.device_manager.DeviceWrapper.DeviceMethodWrapper.method"]], "name (devicewrapper property)": [[7, "alab_management.device_manager.DeviceWrapper.name"]], "on_message() (devicemanager method)": [[7, "alab_management.device_manager.DeviceManager.on_message"]], "on_message() (devicesclient method)": [[7, "alab_management.device_manager.DevicesClient.on_message"]], "run() (devicemanager method)": [[7, "alab_management.device_manager.DeviceManager.run"]], "status (devicemethodcallstate attribute)": [[7, "alab_management.device_manager.DeviceMethodCallState.status"]], "alab_management.device_view": [[8, "module-alab_management.device_view"]], "dictindatabase (class in alab_management.device_view.dbattributes)": [[9, "alab_management.device_view.dbattributes.DictInDatabase"]], "listindatabase (class in alab_management.device_view.dbattributes)": [[9, "alab_management.device_view.dbattributes.ListInDatabase"]], "alab_management.device_view.dbattributes": [[9, "module-alab_management.device_view.dbattributes"]], "append() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.append"]], "apply_default_value() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.apply_default_value"]], "apply_default_value() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.apply_default_value"]], "as_normal_dict() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.as_normal_dict"]], "clear() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.clear"]], "clear() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.clear"]], "copy() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.copy"]], "copy() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.copy"]], "count() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.count"]], "db_filter (dictindatabase property)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.db_filter"]], "db_filter (listindatabase property)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.db_filter"]], "db_projection (dictindatabase property)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.db_projection"]], "db_projection (listindatabase property)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.db_projection"]], "extend() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.extend"]], "fromkeys() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.fromkeys"]], "get() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.get"]], "index() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.index"]], "insert() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.insert"]], "items() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.items"]], "keys() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.keys"]], "pop() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.pop"]], "pop() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.pop"]], "popitem() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.popitem"]], "remove() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.remove"]], "reverse() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.reverse"]], "setdefault() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.setdefault"]], "sort() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.sort"]], "update() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.update"]], "value_in_database() (in module alab_management.device_view.dbattributes)": [[9, "alab_management.device_view.dbattributes.value_in_database"]], "values() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.values"]], "basedevice (class in alab_management.device_view.device)": [[10, "alab_management.device_view.device.BaseDevice"]], "devicesignalemitter (class in alab_management.device_view.device)": [[10, "alab_management.device_view.device.DeviceSignalEmitter"]], "add_device() (in module alab_management.device_view.device)": [[10, "alab_management.device_view.device.add_device"]], "alab_management.device_view.device": [[10, "module-alab_management.device_view.device"]], "args (basedevice attribute)": [[10, "alab_management.device_view.device.BaseDevice.args"]], "connect() (basedevice method)": [[10, "alab_management.device_view.device.BaseDevice.connect"]], "description (basedevice attribute)": [[10, "alab_management.device_view.device.BaseDevice.description"]], "description (basedevice property)": [[10, "id0"]], "dict_in_database() (basedevice method)": [[10, "alab_management.device_view.device.BaseDevice.dict_in_database"]], "disconnect() (basedevice method)": [[10, "alab_management.device_view.device.BaseDevice.disconnect"]], "get_all_devices() (in module alab_management.device_view.device)": [[10, "alab_management.device_view.device.get_all_devices"]], "get_message() (basedevice method)": [[10, "alab_management.device_view.device.BaseDevice.get_message"]], "get_methods_to_log() (devicesignalemitter method)": [[10, "alab_management.device_view.device.DeviceSignalEmitter.get_methods_to_log"]], 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"tests"]], "Tutorial": [[47, "tutorial"]], "Automated solid-state synthesis": [[47, "automated-solid-state-synthesis"]], "The structure of the tutorial": [[47, "the-structure-of-the-tutorial"]]}, "indexentries": {"alab_management": [[1, "module-alab_management"]], "module": [[1, "module-alab_management"], [2, "module-alab_management.alarm"], [3, "module-alab_management.builders"], [4, "module-alab_management.builders.experimentbuilder"], [5, "module-alab_management.builders.samplebuilder"], [6, "module-alab_management.config"], [7, "module-alab_management.device_manager"], [8, "module-alab_management.device_view"], [9, "module-alab_management.device_view.dbattributes"], [10, "module-alab_management.device_view.device"], [11, "module-alab_management.device_view.device_view"], [12, "module-alab_management.experiment_manager"], [13, "module-alab_management.experiment_view"], [14, "module-alab_management.experiment_view.completed_experiment_view"], [15, 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method)": [[6, "alab_management.config.AlabOSConfig.is_sim_mode"]], "path (alabosconfig property)": [[6, "alab_management.config.AlabOSConfig.path"]], "set_item() (alabosconfig method)": [[6, "alab_management.config.AlabOSConfig.set_item"]], "devicemanager (class in alab_management.device_manager)": [[7, "alab_management.device_manager.DeviceManager"]], "devicemethodcallstate (class in alab_management.device_manager)": [[7, "alab_management.device_manager.DeviceMethodCallState"]], "devicewrapper (class in alab_management.device_manager)": [[7, "alab_management.device_manager.DeviceWrapper"]], "devicewrapper.devicemethodwrapper (class in alab_management.device_manager)": [[7, "alab_management.device_manager.DeviceWrapper.DeviceMethodWrapper"]], "devicesclient (class in alab_management.device_manager)": [[7, "alab_management.device_manager.DevicesClient"]], "failure (methodcallstatus attribute)": [[7, "alab_management.device_manager.MethodCallStatus.FAILURE"]], "in_progress 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"alab_management.device_view.dbattributes": [[9, "module-alab_management.device_view.dbattributes"]], "append() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.append"]], "apply_default_value() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.apply_default_value"]], "apply_default_value() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.apply_default_value"]], "as_normal_dict() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.as_normal_dict"]], "clear() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.clear"]], "clear() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.clear"]], "copy() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.copy"]], "copy() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.copy"]], "count() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.count"]], "db_filter (dictindatabase property)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.db_filter"]], "db_filter (listindatabase property)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.db_filter"]], "db_projection (dictindatabase property)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.db_projection"]], "db_projection (listindatabase property)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.db_projection"]], "extend() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.extend"]], "fromkeys() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.fromkeys"]], "get() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.get"]], "index() (listindatabase 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"alab_management.device_view.dbattributes.DictInDatabase.setdefault"]], "sort() (listindatabase method)": [[9, "alab_management.device_view.dbattributes.ListInDatabase.sort"]], "update() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.update"]], "value_in_database() (in module alab_management.device_view.dbattributes)": [[9, "alab_management.device_view.dbattributes.value_in_database"]], "values() (dictindatabase method)": [[9, "alab_management.device_view.dbattributes.DictInDatabase.values"]], "basedevice (class in alab_management.device_view.device)": [[10, "alab_management.device_view.device.BaseDevice"]], "devicesignalemitter (class in alab_management.device_view.device)": [[10, "alab_management.device_view.device.DeviceSignalEmitter"]], "add_device() (in module alab_management.device_view.device)": [[10, "alab_management.device_view.device.add_device"]], "alab_management.device_view.device": [[10, "module-alab_management.device_view.device"]], "args (basedevice attribute)": [[10, "alab_management.device_view.device.BaseDevice.args"]], "connect() (basedevice method)": [[10, "alab_management.device_view.device.BaseDevice.connect"]], "description (basedevice attribute)": [[10, "alab_management.device_view.device.BaseDevice.description"]], "description (basedevice property)": [[10, "id0"]], "dict_in_database() (basedevice method)": [[10, "alab_management.device_view.device.BaseDevice.dict_in_database"]], "disconnect() (basedevice method)": [[10, "alab_management.device_view.device.BaseDevice.disconnect"]], "get_all_devices() (in module alab_management.device_view.device)": [[10, "alab_management.device_view.device.get_all_devices"]], "get_message() (basedevice method)": [[10, "alab_management.device_view.device.BaseDevice.get_message"]], "get_methods_to_log() (devicesignalemitter method)": [[10, "alab_management.device_view.device.DeviceSignalEmitter.get_methods_to_log"]], "is_running() (basedevice method)": [[10, "alab_management.device_view.device.BaseDevice.is_running"]], "kwargs (basedevice attribute)": [[10, "alab_management.device_view.device.BaseDevice.kwargs"]], "list_in_database() (basedevice method)": [[10, "alab_management.device_view.device.BaseDevice.list_in_database"]], "log_method_to_db() (devicesignalemitter method)": [[10, "alab_management.device_view.device.DeviceSignalEmitter.log_method_to_db"]], "log_signal() (in module alab_management.device_view.device)": [[10, "alab_management.device_view.device.log_signal"]], "mock() (in module alab_management.device_view.device)": [[10, "alab_management.device_view.device.mock"]], "name (basedevice attribute)": [[10, "alab_management.device_view.device.BaseDevice.name"]], "request_maintenance() (basedevice method)": [[10, "alab_management.device_view.device.BaseDevice.request_maintenance"]], "retrieve_signal() (basedevice method)": [[10, "alab_management.device_view.device.BaseDevice.retrieve_signal"]], "retrieve_signal() (devicesignalemitter method)": [[10, "alab_management.device_view.device.DeviceSignalEmitter.retrieve_signal"]], "sample_positions (basedevice property)": [[10, "alab_management.device_view.device.BaseDevice.sample_positions"]], "set_message() (basedevice method)": [[10, "alab_management.device_view.device.BaseDevice.set_message"]], "start() (devicesignalemitter method)": [[10, "alab_management.device_view.device.DeviceSignalEmitter.start"]], "stop() (devicesignalemitter method)": [[10, "alab_management.device_view.device.DeviceSignalEmitter.stop"]], "deviceconnectionerror": [[11, "alab_management.device_view.device_view.DeviceConnectionError"]], "devicepausestatus (class in alab_management.device_view.device_view)": [[11, "alab_management.device_view.device_view.DevicePauseStatus"]], "devicetaskstatus (class in alab_management.device_view.device_view)": [[11, "alab_management.device_view.device_view.DeviceTaskStatus"]], "deviceview (class in alab_management.device_view.device_view)": [[11, "alab_management.device_view.device_view.DeviceView"]], "error (devicetaskstatus attribute)": [[11, "alab_management.device_view.device_view.DeviceTaskStatus.ERROR"]], "idle (devicetaskstatus attribute)": [[11, "alab_management.device_view.device_view.DeviceTaskStatus.IDLE"]], "occupied (devicetaskstatus attribute)": [[11, "alab_management.device_view.device_view.DeviceTaskStatus.OCCUPIED"]], "paused (devicepausestatus attribute)": [[11, "alab_management.device_view.device_view.DevicePauseStatus.PAUSED"]], "released (devicepausestatus attribute)": [[11, "alab_management.device_view.device_view.DevicePauseStatus.RELEASED"]], "requested (devicepausestatus attribute)": [[11, "alab_management.device_view.device_view.DevicePauseStatus.REQUESTED"]], "unknown (devicetaskstatus attribute)": [[11, "alab_management.device_view.device_view.DeviceTaskStatus.UNKNOWN"]], "add_devices_to_db() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.add_devices_to_db"]], "alab_management.device_view.device_view": [[11, "module-alab_management.device_view.device_view"]], "execute_command() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.execute_command"]], "get_all() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.get_all"]], "get_all_attributes() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.get_all_attributes"]], "get_attribute() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.get_attribute"]], "get_available_devices() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.get_available_devices"]], "get_device() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.get_device"]], "get_devices_by_task() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.get_devices_by_task"]], "get_message() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.get_message"]], "get_sample_on_device() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.get_sample_on_device"]], "get_status() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.get_status"]], "occupy_device() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.occupy_device"]], "pause_device() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.pause_device"]], "query_property() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.query_property"]], "release_device() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.release_device"]], "request_devices() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.request_devices"]], "set_all_attributes() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.set_all_attributes"]], "set_attribute() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.set_attribute"]], "set_message() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.set_message"]], "sync_device_status() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.sync_device_status"]], "unpause_device() (deviceview method)": [[11, "alab_management.device_view.device_view.DeviceView.unpause_device"]], "experimentmanager (class in alab_management.experiment_manager)": [[12, "alab_management.experiment_manager.ExperimentManager"]], "alab_management.experiment_manager": [[12, "module-alab_management.experiment_manager"]], "handle_pending_experiments() (experimentmanager method)": [[12, "alab_management.experiment_manager.ExperimentManager.handle_pending_experiments"]], "mark_completed_experiments() (experimentmanager method)": [[12, "alab_management.experiment_manager.ExperimentManager.mark_completed_experiments"]], "run() (experimentmanager method)": [[12, "alab_management.experiment_manager.ExperimentManager.run"]], "alab_management.experiment_view": [[13, "module-alab_management.experiment_view"]], "completedexperimentview (class in alab_management.experiment_view.completed_experiment_view)": [[14, "alab_management.experiment_view.completed_experiment_view.CompletedExperimentView"]], "alab_management.experiment_view.completed_experiment_view": [[14, "module-alab_management.experiment_view.completed_experiment_view"]], "exists() (completedexperimentview method)": [[14, "alab_management.experiment_view.completed_experiment_view.CompletedExperimentView.exists"]], "get_experiment() (completedexperimentview method)": [[14, "alab_management.experiment_view.completed_experiment_view.CompletedExperimentView.get_experiment"]], "save_all() (completedexperimentview method)": [[14, "alab_management.experiment_view.completed_experiment_view.CompletedExperimentView.save_all"]], "save_experiment() (completedexperimentview method)": [[14, "alab_management.experiment_view.completed_experiment_view.CompletedExperimentView.save_experiment"]], "inputexperiment (class in alab_management.experiment_view.experiment)": [[15, "alab_management.experiment_view.experiment.InputExperiment"]], "alab_management.experiment_view.experiment": [[15, "module-alab_management.experiment_view.experiment"]], "metadata (inputexperiment attribute)": [[15, "alab_management.experiment_view.experiment.InputExperiment.metadata"]], "model_computed_fields (inputexperiment attribute)": [[15, "alab_management.experiment_view.experiment.InputExperiment.model_computed_fields"]], "model_config (inputexperiment attribute)": [[15, "alab_management.experiment_view.experiment.InputExperiment.model_config"]], "model_fields (inputexperiment attribute)": [[15, "alab_management.experiment_view.experiment.InputExperiment.model_fields"]], "must_be_bsonable() (inputexperiment class method)": [[15, "alab_management.experiment_view.experiment.InputExperiment.must_be_bsonable"]], "name (inputexperiment attribute)": [[15, "alab_management.experiment_view.experiment.InputExperiment.name"]], "samples (inputexperiment attribute)": [[15, "alab_management.experiment_view.experiment.InputExperiment.samples"]], "tags (inputexperiment attribute)": [[15, "alab_management.experiment_view.experiment.InputExperiment.tags"]], "tasks (inputexperiment attribute)": [[15, "alab_management.experiment_view.experiment.InputExperiment.tasks"]], "completed (experimentstatus attribute)": [[16, "alab_management.experiment_view.experiment_view.ExperimentStatus.COMPLETED"]], "error (experimentstatus attribute)": [[16, 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"alab_management.lab_view.LabView"]], "alab_management.lab_view": [[17, "module-alab_management.lab_view"]], "get_locked_sample_positions() (labview method)": [[17, "alab_management.lab_view.LabView.get_locked_sample_positions"]], "get_sample() (labview method)": [[17, "alab_management.lab_view.LabView.get_sample"]], "get_sample_position_parent_device() (labview method)": [[17, "alab_management.lab_view.LabView.get_sample_position_parent_device"]], "move_sample() (labview method)": [[17, "alab_management.lab_view.LabView.move_sample"]], "priority (labview property)": [[17, "alab_management.lab_view.LabView.priority"]], "request_cleanup() (labview method)": [[17, "alab_management.lab_view.LabView.request_cleanup"]], "request_resources() (labview method)": [[17, "alab_management.lab_view.LabView.request_resources"]], "request_user_input() (labview method)": [[17, "alab_management.lab_view.LabView.request_user_input"]], "request_user_input_with_note() (labview method)": [[17, 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"alab_management.resource_manager.resource_requester.RequestMixin"]], "resourcerequestitem (class in alab_management.resource_manager.resource_requester)": [[22, "alab_management.resource_manager.resource_requester.ResourceRequestItem"]], "resourcerequester (class in alab_management.resource_manager.resource_requester)": [[22, "alab_management.resource_manager.resource_requester.ResourceRequester"]], "resourcesrequest (class in alab_management.resource_manager.resource_requester)": [[22, "alab_management.resource_manager.resource_requester.ResourcesRequest"]], "alab_management.resource_manager.resource_requester": [[22, "module-alab_management.resource_manager.resource_requester"]], "content (devicerequest attribute)": [[22, "alab_management.resource_manager.resource_requester.DeviceRequest.content"]], "device (resourcerequestitem attribute)": [[22, "alab_management.resource_manager.resource_requester.ResourceRequestItem.device"]], "get_concurrent_result() (resourcerequester static 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"model_computed_fields (resourcesrequest attribute)": [[22, "alab_management.resource_manager.resource_requester.ResourcesRequest.model_computed_fields"]], "model_config (devicerequest attribute)": [[22, "alab_management.resource_manager.resource_requester.DeviceRequest.model_config"]], "model_config (resourcerequestitem attribute)": [[22, "alab_management.resource_manager.resource_requester.ResourceRequestItem.model_config"]], "model_config (resourcesrequest attribute)": [[22, "alab_management.resource_manager.resource_requester.ResourcesRequest.model_config"]], "model_fields (devicerequest attribute)": [[22, "alab_management.resource_manager.resource_requester.DeviceRequest.model_fields"]], "model_fields (resourcerequestitem attribute)": [[22, "alab_management.resource_manager.resource_requester.ResourceRequestItem.model_fields"]], "model_fields (resourcesrequest attribute)": [[22, "alab_management.resource_manager.resource_requester.ResourcesRequest.model_fields"]], "preprocess() (resourcesrequest class method)": [[22, "alab_management.resource_manager.resource_requester.ResourcesRequest.preprocess"]], "release_all_resources() (resourcerequester method)": [[22, "alab_management.resource_manager.resource_requester.ResourceRequester.release_all_resources"]], "release_resources() (resourcerequester method)": [[22, "alab_management.resource_manager.resource_requester.ResourceRequester.release_resources"]], "request_resources() (resourcerequester method)": [[22, "alab_management.resource_manager.resource_requester.ResourceRequester.request_resources"]], "root (resourcesrequest attribute)": [[22, "alab_management.resource_manager.resource_requester.ResourcesRequest.root"]], "sample_positions (resourcerequestitem attribute)": [[22, "alab_management.resource_manager.resource_requester.ResourceRequestItem.sample_positions"]], "update_request_status() (requestmixin method)": [[22, "alab_management.resource_manager.resource_requester.RequestMixin.update_request_status"]], "alab_management.sample_view": [[23, "module-alab_management.sample_view"]], "completedsampleview (class in alab_management.sample_view.completed_sample_view)": [[24, "alab_management.sample_view.completed_sample_view.CompletedSampleView"]], "alab_management.sample_view.completed_sample_view": [[24, "module-alab_management.sample_view.completed_sample_view"]], "exists() (completedsampleview method)": [[24, "alab_management.sample_view.completed_sample_view.CompletedSampleView.exists"]], "save_sample() (completedsampleview method)": [[24, "alab_management.sample_view.completed_sample_view.CompletedSampleView.save_sample"]], "separator (sampleposition attribute)": [[25, "alab_management.sample_view.sample.SamplePosition.SEPARATOR"]], "sample (class in alab_management.sample_view.sample)": [[25, "alab_management.sample_view.sample.Sample"]], "sampleposition (class in alab_management.sample_view.sample)": [[25, "alab_management.sample_view.sample.SamplePosition"]], "add_standalone_sample_position() (in module alab_management.sample_view.sample)": [[25, "alab_management.sample_view.sample.add_standalone_sample_position"]], "alab_management.sample_view.sample": [[25, "module-alab_management.sample_view.sample"]], "description (sampleposition attribute)": [[25, "alab_management.sample_view.sample.SamplePosition.description"]], "get_all_standalone_sample_positions() (in module alab_management.sample_view.sample)": [[25, "alab_management.sample_view.sample.get_all_standalone_sample_positions"]], "metadata (sample attribute)": [[25, "alab_management.sample_view.sample.Sample.metadata"]], "name (sample attribute)": [[25, "alab_management.sample_view.sample.Sample.name"]], "name (sampleposition attribute)": [[25, "alab_management.sample_view.sample.SamplePosition.name"]], "number (sampleposition attribute)": [[25, "alab_management.sample_view.sample.SamplePosition.number"]], "position (sample attribute)": [[25, "alab_management.sample_view.sample.Sample.position"]], "sample_id (sample attribute)": [[25, "alab_management.sample_view.sample.Sample.sample_id"]], "tags (sample attribute)": [[25, "alab_management.sample_view.sample.Sample.tags"]], "task_id (sample attribute)": [[25, "alab_management.sample_view.sample.Sample.task_id"]], "empty (samplepositionstatus attribute)": [[26, "alab_management.sample_view.sample_view.SamplePositionStatus.EMPTY"]], "locked (samplepositionstatus attribute)": [[26, "alab_management.sample_view.sample_view.SamplePositionStatus.LOCKED"]], "occupied (samplepositionstatus attribute)": [[26, "alab_management.sample_view.sample_view.SamplePositionStatus.OCCUPIED"]], "samplepositionrequest (class in alab_management.sample_view.sample_view)": [[26, "alab_management.sample_view.sample_view.SamplePositionRequest"]], "samplepositionstatus (class in alab_management.sample_view.sample_view)": [[26, "alab_management.sample_view.sample_view.SamplePositionStatus"]], "sampleview (class in alab_management.sample_view.sample_view)": [[26, "alab_management.sample_view.sample_view.SampleView"]], "add_sample_positions_to_db() (sampleview method)": [[26, "alab_management.sample_view.sample_view.SampleView.add_sample_positions_to_db"]], "alab_management.sample_view.sample_view": [[26, "module-alab_management.sample_view.sample_view"]], "clean_up_sample_position_collection() (sampleview method)": [[26, "alab_management.sample_view.sample_view.SampleView.clean_up_sample_position_collection"]], "create_sample() (sampleview method)": [[26, "alab_management.sample_view.sample_view.SampleView.create_sample"]], "exists() (sampleview method)": [[26, "alab_management.sample_view.sample_view.SampleView.exists"]], "from_py_type() (samplepositionrequest class method)": [[26, "alab_management.sample_view.sample_view.SamplePositionRequest.from_py_type"]], "from_str() (samplepositionrequest class method)": [[26, 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"alab_management.sample_view.sample_view.SampleView.get_samples_on_device"]], "is_locked_position() (sampleview method)": [[26, "alab_management.sample_view.sample_view.SampleView.is_locked_position"]], "is_unoccupied_position() (sampleview method)": [[26, "alab_management.sample_view.sample_view.SampleView.is_unoccupied_position"]], "lock_sample_position() (sampleview method)": [[26, "alab_management.sample_view.sample_view.SampleView.lock_sample_position"]], "model_computed_fields (samplepositionrequest attribute)": [[26, "alab_management.sample_view.sample_view.SamplePositionRequest.model_computed_fields"]], "model_config (samplepositionrequest attribute)": [[26, "alab_management.sample_view.sample_view.SamplePositionRequest.model_config"]], "model_fields (samplepositionrequest attribute)": [[26, "alab_management.sample_view.sample_view.SamplePositionRequest.model_fields"]], "move_sample() (sampleview method)": [[26, 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"module-alab_management.task_view.completed_task_view"]], "exists() (completedtaskview method)": [[31, "alab_management.task_view.completed_task_view.CompletedTaskView.exists"]], "get_task() (completedtaskview method)": [[31, "alab_management.task_view.completed_task_view.CompletedTaskView.get_task"]], "save_task() (completedtaskview method)": [[31, "alab_management.task_view.completed_task_view.CompletedTaskView.save_task"]], "basetask (class in alab_management.task_view.task)": [[32, "alab_management.task_view.task.BaseTask"]], "largeresult (class in alab_management.task_view.task)": [[32, "alab_management.task_view.task.LargeResult"]], "add_reroute_task() (in module alab_management.task_view.task)": [[32, "alab_management.task_view.task.add_reroute_task"]], "add_task() (in module alab_management.task_view.task)": [[32, "alab_management.task_view.task.add_task"]], "add_to() (basetask method)": [[32, "alab_management.task_view.task.BaseTask.add_to"]], "alab_management.task_view.task": 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"alab_management.task_view.task.LargeResult.retrieve"]], "run() (basetask method)": [[32, "alab_management.task_view.task.BaseTask.run"]], "run_subtask() (basetask method)": [[32, "alab_management.task_view.task.BaseTask.run_subtask"]], "samples (basetask property)": [[32, "alab_management.task_view.task.BaseTask.samples"]], "set_message() (basetask method)": [[32, "alab_management.task_view.task.BaseTask.set_message"]], "storage_type (largeresult attribute)": [[32, "alab_management.task_view.task.LargeResult.storage_type"]], "store() (largeresult method)": [[32, "alab_management.task_view.task.LargeResult.store"]], "validate() (basetask method)": [[32, "alab_management.task_view.task.BaseTask.validate"]], "cancelled (taskstatus attribute)": [[33, "alab_management.task_view.task_enums.TaskStatus.CANCELLED"]], "completed (taskstatus attribute)": [[33, "alab_management.task_view.task_enums.TaskStatus.COMPLETED"]], "cancelingprogress (class in alab_management.task_view.task_enums)": [[33, 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"alab_management.user_input.request_user_input_with_note"]], "retrieve_user_input() (userinputview method)": [[35, "alab_management.user_input.UserInputView.retrieve_user_input"]], "retrieve_user_input_with_note() (userinputview method)": [[35, "alab_management.user_input.UserInputView.retrieve_user_input_with_note"]], "update_request_status() (userinputview method)": [[35, "alab_management.user_input.UserInputView.update_request_status"]]}}) \ No newline at end of file diff --git a/setup.html b/setup.html index c4336b12..f025570c 100644 --- a/setup.html +++ b/setup.html @@ -171,7 +171,7 @@
  • Best Practices
  • Advance Topics
  • Development
    • diff --git a/start_lab.html b/start_lab.html index c16ba4b1..7fc6b4e2 100644 --- a/start_lab.html +++ b/start_lab.html @@ -171,7 +171,7 @@
  • Best Practices
  • Advance Topics
  • Development
    • diff --git a/submit_experiments.html b/submit_experiments.html index b613a348..14bff19d 100644 --- a/submit_experiments.html +++ b/submit_experiments.html @@ -173,7 +173,7 @@
  • Best Practices
  • Advance Topics
  • Development
    • diff --git a/task_definition.html b/task_definition.html index 8662bd16..99012175 100644 --- a/task_definition.html +++ b/task_definition.html @@ -173,7 +173,7 @@
  • Best Practices
  • Advance Topics
  • Development
    • diff --git a/test.html b/test.html index 32ed897f..749775ec 100644 --- a/test.html +++ b/test.html @@ -8,7 +8,7 @@ - Testing for Alab Definition — Alab Management 1.0.1 + Testing for AlabOS Project — Alab Management 1.0.1 @@ -171,7 +171,7 @@
  • Best Practices
  • Advance Topics
  • Development
    • @@ -382,7 +382,7 @@
    -

    Testing for Alab Definition

    +

    Testing for AlabOS Project

    @@ -412,8 +412,8 @@

    Contents