mha2nnunet_settings.json

{
    "dataset_json": {
        "task": "Task100_test",
        "description": "bpMRI scans from ProstateX dataset to test mha2nnunet",
        "tensorImageSize": "4D",
        "reference": "",
        "licence": "",
        "release": "0.3",
        "modality": {
            "0": "T2W",
            "1": "CT",
            "2": "HBV"
        },
        "labels": {
            "0": "background",
            "1": "lesion"
        }
    },
    "preprocessing": {
        "matrix_size": [
            20,
            160,
            160
        ],
        "spacing": [
            3.0,
            0.5,
            0.5
        ]
    },
    "archive": [
        {
            "patient_id": "ProstateX-0000",
            "study_id": "07-07-2011",
            "scan_paths": [
                "ProstateX-0000/ProstateX-0000_07-07-2011_t2w.mha",
                "ProstateX-0000/ProstateX-0000_07-07-2011_adc.mha",
                "ProstateX-0000/ProstateX-0000_07-07-2011_hbv.mha"
            ],
            "annotation_path": "ProstateX-0000_07-07-2011.nii.gz"
        },
        {
            "patient_id": "ProstateX-0001",
            "study_id": "07-08-2011",
            "scan_paths": [
                "ProstateX-0001/ProstateX-0001_07-08-2011_t2w.mha",
                "ProstateX-0001/ProstateX-0001_07-08-2011_adc.mha",
                "ProstateX-0001/ProstateX-0001_07-08-2011_hbv.mha"
            ],
            "annotation_path": "ProstateX-0001_07-08-2011.nii.gz"
        }
    ]
}