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Makefile.in
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Makefile.in
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# Top level Makefile
#
# On most systems, to build code you should only need:
# % ./configure; make
# Optionally, you can run a test suite:
# % make check
# And optionally, you can install everything more permanently:
# % make install
#
# VPATH and shell configuration
#
top_srcdir = @top_srcdir@
srcdir = @srcdir@
VPATH = @srcdir@
SHELL = /bin/sh
# location of hmmer, easel, FastTree, R2R, rnaview
FASTTREEDIR = @RSCAPE_FASTTREEDIR@
R2RDIR = @RSCAPE_R2RDIR@
RNAVIEWDIR = @RSCAPE_RNAVIEWDIR@
ESLDIR = @RSCAPE_ESLDIR@
HMMERDIR = @RSCAPE_HMMERDIR@
INFERNALDIR = @RSCAPE_INFERNALDIR@
RVIEWDIR = @RVIEW_DIR@
# location of libdivsufsort for suffix array creation
SADIR = @RSCAPE_SADIR@
# Package information
#
PACKAGE = @PACKAGE_NAME@
PACKAGE_VERSION = @PACKAGE_VERSION@
PACKAGE_TARNAME = @PACKAGE_TARNAME@
RSCAPE = @RSCAPE_NAME@
RSCAPE_VERSION = @RSCAPE_VERSION@
RSCAPE_DATE = @RSCAPE_DATE@
RVIEW = @RVIEW_NAME@
RVIEW_VERSION = @RVIEW_VERSION@
RVIEW_DATE = @RVIEW_DATE@
E2MSA = @E2MSA_NAME@
E2MSA_VERSION = @E2MSA_VERSION@
E2MSA_DATE = @E2MSA_DATE@
# Installation targets
#
prefix = @prefix@
exec_prefix = @exec_prefix@
datarootdir = @datarootdir@
bindir = @bindir@
libdir = @libdir@
includedir = @includedir@
mandir = @mandir@
docdir = @docdir@
pdfdir = @pdfdir@
mandir = @mandir@
man1dir = ${mandir}/man1
man1ext = .1
# Compiler configuration
#
CC = @CC@
CFLAGS = @CFLAGS@ @PTHREAD_CFLAGS@ @PIC_FLAGS@
LDFLAGS = -static @LDFLAGS@
SIMDFLAGS = @SIMD_CFLAGS@
CPPFLAGS = @CPPFLAGS@
# Other tools
#
AR = @AR@
RANLIB = @RANLIB@
INSTALL = @INSTALL@
# beautification magic stolen from git
#
QUIET_SUBDIR0 = +${MAKE} -C #space separator after -c
QUIET_SUBDIR1 =
ifndef V
QUIET_CC = @echo ' ' CC $@;
QUIET_GEN = @echo ' ' GEN $@;
QUIET_AR = @echo ' ' AR $@;
QUIET_SUBDIR0 = +@subdir=
QUIET_SUBDIR1 = ; echo ' ' SUBDIR $$subdir; \
${MAKE} -C $$subdir
endif
.PHONY: all dev check pdf install uninstall clean distclean TAGS tags-append
# all: Compile all documented executables.
# (Excludes test programs.)
#
all:
${QUIET_SUBDIR0}${FASTTREEDIR} ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}${R2RDIR} ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}${ESLDIR} ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}${SADIR} ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}${HMMERDIR} ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}${INFERNALDIR} ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}${RVIEWDIR} ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}src ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}${RNAVIEWDIR} ${QUIET_SUBDIR1} all
${QUIET_SUBDIR0}documentation ${QUIET_SUBDIR1} pdf
${QUIET_SUBDIR0}documentation/e2msa ${QUIET_SUBDIR1} pdf
# install: installs the binaries in ${bindir}/
# When man pages are done, will install man pages in MANDIR/man1/ (e.g. if MANSUFFIX is 1)
# Creates these directories if they don't exist.
# Prefix those paths with ${DESTDIR} (rarely used, usually null;
# may be set on a make command line when building contrib RPMs).
install:
${INSTALL} -d ${DESTDIR}${bindir}
${INSTALL} -d ${DESTDIR}${man1dir}
${INSTALL} -d ${DESTDIR}${pdfdir}
${QUIET_SUBDIR0}${FASTTREEDIR} ${QUIET_SUBDIR1} install
${QUIET_SUBDIR0}${R2RDIR} ${QUIET_SUBDIR1} install
${QUIET_SUBDIR0}${RVIEWDIR} ${QUIET_SUBDIR1} install
${QUIET_SUBDIR0}src ${QUIET_SUBDIR1} install
${QUIET_SUBDIR0}${RNAVIEWDIR} ${QUIET_SUBDIR1} install
# uninstall: Reverses the steps of "make install".
#
uninstall:
${QUIET_SUBDIR0}${FASTTREEDIR} ${QUIET_SUBDIR1} uninstall
${QUIET_SUBDIR0}${R2RDIR} ${QUIET_SUBDIR1} uninstall
${QUIET_SUBDIR0}${RVIEWDIR} ${QUIET_SUBDIR1} uninstall
${QUIET_SUBDIR0}src ${QUIET_SUBDIR1} uninstall
${QUIET_SUBDIR0}${RNAVIEWDIR} ${QUIET_SUBDIR1} uninstall
# "make clean" removes almost everything except configuration files.
#
clean:
${QUIET_SUBDIR0}${FASTTREEDIR} ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}${R2RDIR} ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}${HMMERDIR} ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}${ESLDIR} ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}${SADIR} ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}${INFERNALDIR} ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}${RVIEWDIR} ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}src ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}documentation ${QUIET_SUBDIR1} clean
${QUIET_SUBDIR0}documentation/e2msa ${QUIET_SUBDIR1} clean
-rm -f *.o *~ Makefile.bak core TAGS gmon.out
${QUIET_SUBDIR0}${RNAVIEWDIR} ${QUIET_SUBDIR1} clean
# "make distclean" leaves a pristine source distribution.
#
distclean:
${QUIET_SUBDIR0}${FASTTREEDIR} ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}${R2RDIR} ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}${HMMERDIR} ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}${ESLDIR} ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}${SADIR} ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}${INFERNALDIR} ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}${RVIEWDIR} ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}src ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}documentation ${QUIET_SUBDIR1} distclean
${QUIET_SUBDIR0}documentation/e2msa ${QUIET_SUBDIR1} distclean
${QUIET}-rm config.log config.status
${QUIET}-rm -rf autom4te.cache
${QUIET}-rm -f *.o *~ Makefile.bak core TAGS gmon.out
${QUIET}-rm Makefile
${QUIET}-rm bin/*
${QUIET_SUBDIR0}${RNAVIEWDIR} ${QUIET_SUBDIR1} distclean