CHANGELOG.md

Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[Unreleased]

Added

Changed

Fixed

Removed

[1.9.9] - 2024-10-03

Changed

• Update ESMF CMake target to ESMF::ESMF
• Update n4zip with long option for non-alphabetical sorting

Fixed

• Declare main in makdep.c as int to satisfy gcc 14

[1.9.8] - 2024-07-31

Fixed

• Fixed invalid Fortran in GMAO_ods/ods_diagnc4.f90
• Added stdlib.h in GMAO_pyobs/VegType_io.c to fix compilation error with icx

[1.9.7] - 2024-01-30

Added

• Add new CHOOSEZ0 option that triggers the use of Charnock coefficient

Changed

• Move to circleci-tools v2 orb
• Update CI to v2 orb

[1.9.6] - 2023-11-01

Fixed

• Fixes for Perl 5.26 on SLES15

[1.9.5] - 2023-10-18

Changed

• Updated esma_mpirun for MVAPICH to use mpiexec
• add info on LEO-GEO: obs table upadate (zero-diff)

[1.9.4] - 2023-09-15

Changed

• add Planet IQ to odsmatch.rc

[1.9.3] - 2023-09-15

Added

• dyn_hydro
  • This program adds the hydrometeors to bkg.eta files that don't have them (such as those coming from MERRA-2). (Mistakenly not brought over during CVS-to-Git transition)

Changed

• Syncs obsys with that used in FP as of 14 Sep 2023
• dyn2dyn updated to allow for user-specified IM x JM when regrinding

[1.9.2] - 2023-08-24

Changed

• Update CI to use Baselibs and BCs from CircleCI Orb

[1.9.1] - 2023-06-06

Added

• Added protection against specific error conditions to reset the ice to a default profile instead of crashing. This is valid only for MITgcm

Changed

• Change CICE4 build to shared library, in preparation for CICE6 integration

[1.9.0] - 2023-05-09

Changed

• Updated 181 and 91L ak/bk to remove kinks in 1st derivative of DZ. Modified ak at top four levels of L137.
• Converted pyrob and pyrob_CF to Python 3. Requires MAPL 2.36.0 and ESMA_cmake v3.28.0 for f2py support

[1.8.0] - 2023-03-10

Changed

• Merging in changes associated with refactored physics and gmap4.

[1.7.2] - 2023-03-17

Changed

• Improved trace gas ODS support; incorporates most recent changes to ODS in rt_g530_1.6.0_merge (AMSR, more OMPS)

[1.7.1] - 2023-02-10

Changed

• Updated files to be consistent with das tags 5.30
• Updated CODEOWNERS as GEOS_Util has been moved

[1.7.0] - 2023-01-20

Removed

• Removed GEOS_Util as it is its own repo in GEOS-ESM now

[1.6.5] - 2023-01-20

Added

• New coupled diagnostics package based on python3

[1.6.4] - 2023-01-17

Changed

• Updates for WSTAR Calculation using Model Omega. Also, several basic QUICKPLOT updates.

Removed

• Remove hasw constraint choice from remapping questions since they are being decommissioned by NCCS

[1.6.3] - 2022-12-08

Changed

• Moved to GitHub Actions for label enforcement
• Updated CircleCI to Baselibs 7.7.0
• Set default data ocean to be CS at C90+ resolution in remap_restarts.py
• Updated remap_restarts.py to use argparse

Fixed

• Fix an issue with regrid.pl and remap_restarts.py regridding from MERRA-2 from 2021-06 to 2021-09
• Fix an issue with remap_restarts.py for post 2011 regridding from MERRA2

[1.6.2] - 2022-11-17

Fixed

• Fixed gcmpost.script logic to generate xdf.tabl files for collections with monthly: 1 attribute
• Update EASE grid tile file name to contain pfafxxx
• Add a dependency on GMAO_perllib in GMAO_etc

[1.6.1] - 2022-09-22

Changed

Apply latest updates from L. Takacs to the plot package

[1.6.0] - 2022-09-12

Changed

• Updates the plot package with the renamed carbon species.

[1.5.8] - 2022-09-08

Added

• Add YAML validator

Changed

• Converted obsys_rc.py, check_obsysrc.py, and associated unittests to Python 3

• Added features to cmpdir.pl (option to toggle between diff and xxdiff; added -B to -bwi flags)

• Generated command line to run the program

• changed the location of the temporary folder for remap_restarts MERRA-2 case

• Added new remap tests

  • amip_c180Toc90
  • c180Toc360
  • c360Toc24
  • s2sv3Toc12MOM6

Fixed

• Add target attribute to variables in nc_diag_cat. Needed to build with Intel 2022.1

[1.5.7] - 2022-08-01

Changed

Updates consistent with CVS Jason-4_0_p1_sky. Releases non-needed memory from zcmp/progz. Otherwise, minor plot updates.

[1.5.6] - 2022-07-22

Added

• Introduce series of remap_restarts Python scripts to GEOS_Util/post
• Add a series of tests for remap_restarts

Changed

• Updated CI to modern v1 orb
• Updated CI to use Baselibs 7.5.0

Fixed

• Implemented a more robust check to test if a history's monthly attribute is 1 (on) and not commented out.
• Fixed setting of ks in m_set_eta.F90 to be based on bk
• Added check for infinity in time_ave.F and replace with undef

[1.5.5] - 2022-06-08

Changed

• Changed restart file geosachem to achem in regrid.pl
• More updates to CMake to more canonical CMake style (NetCDF, ESMF, etc.). These were missed in previous go-arounds as they are only built with ADAS. (Requires ESMA_cmake v3.15.1)

[1.5.4] - 2022-05-03

Added

• Added statsNx.rc for screen level variable fstats

Changed

• Added options for land-only and screen-level variables in fstats.x and g5fcst_stats.pl
• Added a few new tags to regrid.pl
• Changes allow gcmpost.script and gcmclim.script to handle collection.monthly: 1 output and stop automatic archiving.

Fixed

• Fixed a minor CMake issue to keep all mod files in build/include

[1.5.3] - 2022-03-18

Changed

• Modified chckhist.new to handle OPS HISTORY.rc, fixed minor bugs in 3CH.F90 and 3CH.j

[1.5.2] - 2022-03-18

Added

• Added preprocessing team as CODEOWNER for the GEOS_Util/pre directory
• added a way to process Reynolds only for producing SST and Ice Concentration data, using a land-sea mask. The new file is: proc_SST_FRACI_reynolds_quart.F90 and modified: read_Reynolds.F90, CMakeLists.txt Note: the contents of this directory will be defunct once ExtData mechanics are implemented, WIP with @bena-nasa

Changed

• bugfix to token_resolve() routine in GMAO_etc/Manipulate_time.pm

Fixed

• Updates to CMake to support Spack

Added

• Added capability to produce netcdf ocean pre-processing datasets, with doc and notebooks to demo.

[1.5.1] - 2022-02-04

Changed

• Compress CircleCI artifacts
• Updated CircleCI to use Orb

[1.5.0] - 2021-12-16

Added

• Add support for GOCART2G restarts in regrid.pl

Removed

• Moved lightning files to Chem_Shared

[1.4.13] - 2021-12-15

Fixed

• Quickplot and quickstat bugs

Added

• Quickplot now supports plotting GOCART-2G collections
• Support for Three Corner Hat (3CH) Analysis

[1.4.12] - 2021-12-09

Changed

• Update regrid.pl
  • Add options for MOM5 and MOM6 tile files
  • Add ability to use git tags for "tagin" and "tagout"

Fixed

• Update to idcheck.pl to allow fvsetup to check whether the expid already exists in the SemperPy databases

• Moved Lightning_mod.F90 and lightning_toolbox_mod.F90 from GEOS_Shared to a different repository (GEOSchem_GridComp)

[1.4.11] - 2021-11-03

Changed

• add Cascade knob to g5fcst_stats.pl and regrid.pl
• revised dyn_blob: more general on the blobs
• make sure echorc.x exits w/ success code when applicable
• Updated CI to use Baselibs 6.2.8
• Updated pyrob to work with GEOS-IT files
• Changed the Intel MPI and MVAPICH2 flags in regrid.pl to be modern

[1.4.10] - 2021-10-08

Added

• Added a new GMAO_eu target to create a libGMAO_eu.a like in GNU Make days
• Added parallel_untar.py script
• Added dyn_blob.x and dyn_fsens_conv.x to Hermes

Fixed

• CMake fix for non-Intel compilers in GMAO_ods

Changed

• Updates to documentation tables for KX values
• Updates to obsys-nccs.rc
• Updates to g5fcst_stats.pl
• Updated the CI for GMAO_Shared to do Intel and GNU

[1.4.9] - 2021-10-06

Fixed

• Fixed issue with regrid.pl and regridding catch_internal_rst

[1.4.8] - 2021-10-05

Fixed

• Fixed issue with CICE4 by compiling with old non-vectorized Release flags when compiling with Intel. Requires ESMA_cmake v3.6.1

[1.4.7] - 2021-10-04

Added

• Added pyrob_CF script

Changed

• Updates to support Catchment-CN.4.5 in addition to Catchment-CN.4.0

[1.4.6] - 2021-09-15

Changed

• Updates to regrid.pl to allow processing of restarts for two different versions of Catchment-CN land model
• change is zero-diff for Catchment and Catchment-CN4.0

[1.4.6] - 2021-07-21

Changed

• Updates to plots package from L. Takacs

[1.4.5] - 2021-06-25

Fixed

• Fix for IASI (#202)

[1.4.4] - 2021-06-25

Added

• Add new echorc.pl script (alternative to echorc.x)
• Added 181 levs to GMAO_hermes/dyn2dyn.f90 and a frequency change in GMAO_etc/obsys-nccs.rc

Changed

• Changed esma_mpirun for MVAPICH2

[1.4.3] - 2021-06-11

Added

• Add changes consistent with what is in GEOSadas 5.28

[1.4.2] - 2021-05-25

Added

Add ability to write out energy components to file.

Fixed

Bugfix to prevent a seg-fault when calculating the lightning flash rate implemented in HEMCO/GEOS-Chem.

[1.4.1] - 2021-05-14

• Renamed LANL_Shared/LANL_cice to LANL_Shared/CICE4

Fixed

• In regrid.pl: Fixed the -wemin and -wemout options so that they will accept integer values; Also added Jason-NL BCS tag choice
• Fixes for PSAS code and Intel MPI

Changed

• Multiple updates brought over from GEOSadas work (see #166)
• Update F2PY module calls to support both Python2 and Python3 loaded at same time

[1.4.0] - 2021-04-15

Fixed

• Sync atmOcnIntlayer with that in GEOS-FP GEOS-5.27.1 (02/2021) GEOSadas-5_27_1_p3
• Fixed build for directories that are built as part of the GEOSdas

[1.3.10] - 2021-04-02

Changed

• Multiple updates brought over from GEOSadas work (see #166)

[1.3.9] - 2021-03-17

Fixed

• Fix for out-of-bounds error in lightning module (#99)

Changed

• Stats plot updates

Added

• Extend binary tile to supprot future river route component development

Removed

• Remove CMIP_1977_1982 directory in GEOS_Util/pre/NSIDC-OSTIA_SST-ICE_blend

[1.3.8] - 2021-02-12

Changed

• Plot and stats updates

Removed

• Eliminated references to MAPL_COMM - these are no longer used and will be deleted in future releases of MAPL

[1.3.7] - 2021-01-29

Changed

• Plot and stats updates

Fixed

• Fix flags for zonal.f compilation

[1.3.6] - 2021-01-12

Changed

• Added -partition option to regrid.pl

Fixed

• Fixed compilation flags for zonal.f to match that of CVS
• Fixed bug in res/zonal.gs for zonal.x location
• Added flag to regrid_forcing_esmf.x to force a 0 to 1 range when regridding files that should use fractions

Added

• Allows PRs with "0-diff trivial" labels to skip updating CHANGELOG.md

[1.3.5] - 2020-12-10

Fixed

• Use CONFIGURE_DEPENDS with file(GLOB) calls
• Fix OpenMP in GMAO_stoch

Added

• Add support for Aggressive build type

[1.3.4] - 2020-11-25

Fixed

• Updates for DSO work

Changed

• Update plots consistent with latest cvs tags

[1.3.3] - 2020-10-28

Changed

• Added Docker authentication for CI
• Update CI images for Baselibs 6.0.22

Fixed

• Updates to plots/configure so that it is run at install time. This should allow others to then run plots on another person's build

Removed

Added

• Add warning-level loggers to GEOS_Utilities (D)QSAT code for NaN detection

[1.3.2] - 2020-10-14

Fixed

• Fixed regrid_forcing.x and regrid_forcing_esmf.x so they will work with MAPL2.2 and beyond

Changed

• Updated the NCPUs detection in various post scripts to be SLURM-aware

[1.3.1] - 2020-10-13

Changed

• Updated changelog-enforcer.yml to v1.4.0

Added

• Modify plots to display new constraint diagnostics
• Update atmOceanIntLayer.F90 add AVOIL_v0 which wraps the update of surface skin variables (temperature, water mass, salinity, etc) into a single call.

[1.3.0] - 2020-09-28

Fixed

• Undo the change to GEOS_Utilities.F90 in v1.2.0. This has a bug at the end of the table (#123)

[1.2.0] - 2020-09-25

Changed

• Update GEOS_Utilities.F90 to match GEOSadas-5_27_0 (#115)

[1.1.10] - 2020-09-25

Changed

• Updated the CircleCI Image

[1.1.9] - 2020-09-15

Changed

• All the subroutines that are called from within OPENWATERCORE of GEOS_OpenWaterGridComp.F90 have been moved to GMAO_Shared so they can be shared across applications and components.

[1.1.8] - 2020-08-12

Fixed

• Fixes to allow Intel 19.1.2 to use CICE

[1.1.7] - 2020-07-23

Changed

• Updates to plots
• Modify mpirun flags for Open MPI 4.0.4

Fixed

• Allows the JCAP functionality to work again in mkiau gridcomp as that needs the r4 version of ncep_sp in gmao_transf

[1.1.6] - 2020-07-06

Fixed

• CMake update for building with GCC 10 in Release mode
• Fix for incorrect OpenMP usage in lightning_toolbox_mod.F90 as detected by Intel Fortran 19

[1.1.5] - 2020-06-26

Added

• Support for new vertical resolutions

Changed

• Updates to coupled plotting package (coupled_diagnostics)

[1.1.4] - 2020-06-05

Changed

• Rolls back the constraint on gcmpost.script to only operate on pressure-level collections.

Fixed

• Enables correct post proccessing of MAPL monthly collections.
• Added ignore_nan option for time_ave.F (off by default).
• Update allowing both ifort and gfortran compilations to read CICE binary grid files.

[1.1.3] - 2020-04-09

Added

• Adds lightning module to compute flash rate (requires: GEOSchem_GridComp v1.3.3+ and GEOSgcm_GridComp v1.8.3+)

Fixed

• Allows regrid.pl to run on SLES-12
• Enabled compilation of convert_aerosols.x as R8

[1.1.2] - 2020-03-26

Fixed

• Modified gcmpost.script to only operate on pressure-level collections.
• Fixes issues where systems do not have either ImageMagick or F2Py. If F2Py is not found, then F2Py targets are not built.

Changed

• Adding an option to pass in the model (default: hasw) to quickstat.
• Changes to GMAO_hermes:
  • Split off the independent sections of module m_topo_remap used by FV core into shared_topo_remap
  • write_eta.F90 added to prepare for a config file which eventually will replace m_set_eta module
  • Add option to build HERMES_LIGHT

[1.1.1] - 2020-03-04

• Enable additional upper levels for forecast stats plots.
• Add QITOT & QLTOT to horizontal plots.
• Add aerosols to time series plots.
• Use sbatch at NCCS, qsub at NAS.

[1.1.0] - 2020-02-13

Changed

• Many updates to support MAPL 2.0

[1.0.17] - 2020-02-04

Changed

• Updates to produce stratospheric forecast statistics up to 1mb.

[1.0.16] - 2020-01-28

Fixed

• Better representation of statistical significance in stats plots accounting for line thickness
• Updates to perl scripts in post to accommodate SLES12

[1.0.15] - 2020-01-16

Changed

• Updates to catchment restart regridding.
• Add WEMIN input and output and an attempt to make in/out restarts consistent.
• Clearer names for WEmin in/out.
• Provide info about WEmin before prompting so the user is informed about their choices.
• Update post/plot to CVS tag Jason-3_3_aoil.
• Updated file in pre directory to be consistent with ops.

[1.0.13] - 2019-11-07

Changed

• Build stats.x as big-endian

Fixed

• Fixes undefined references to GEOSSRC, GEOSBIN, and GEOSAPP in quickstat

[1.0.12] - 2019-09-27

Changed

• Updates for s2s

Fixed

• Fixed bug in utils

[1.0.11] - 2019-09-13

Fixed

• Moved getco2 for ldas

Changed

• Updates for IAU_Error_plots

[1.0.10] - 2019-09-06

Fixed

• CMake fix for GFIO existence test

[1.0.9] - 2019-09-04

Fixed

• Make GMAO_gfio build contingent on the subdir being present.

[1.0.8] - 2019-08-28

Changed

• Updates from CVS GEOSadas-5_25_2 tag

[1.0.7] - 2019-08-27

Changed

• Modified color shading based on 99.99% confidence

[1.0.6] - 2019-08-27

Removed

• Extracted FMS to separate repo

[1.0.5] - 2019-08-27

Fixed

• Yet another file missing from installation for plots to function

[1.0.3] - 2019-08-05

Changed

• Montage Plots Updates from Jason-3_2

[1.0.2] - 2019-07-26

Changed

• Updates from Jason-UNSTABLE as of 2019-Jul-26

[1.0.1] - 2019-07-26

Changed

• Updates from Jason-3_1

[1.0.0] - 2019-07-25

Changed

• Initial Release with Semantic Versioning
  • Repository split from CVS ESMA Repository.
  • Equivalent to cvs/GEOSadas-5_25_0 release.