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requirements.txt
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requirements.txt
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#
# This file is autogenerated by pip-compile
# To update, run:
#
# pip-compile
#
altair==4.1.0 # via -r requirements.in
appnope==0.1.0 # via ipykernel, ipython
argon2-cffi==20.1.0 # via notebook
async-generator==1.10 # via nbclient
atomicwrites==1.4.0 # via pytest
attrs==20.2.0 # via jsonschema, pytest
backcall==0.2.0 # via ipython
bleach==3.2.1 # via nbconvert
blessings==1.7 # via cameo
cameo==0.11.15 # via -r requirements.in
certifi==2020.6.20 # via matplotlib, requests
cffi==1.14.3 # via argon2-cffi
chardet==3.0.4 # via requests
click==7.1.2 # via cameo
cobra==0.19.0 # via -r requirements.in, cameo, escher
cycler==0.10.0 # via matplotlib
decorator==4.4.2 # via ipython, networkx, traitlets
defusedxml==0.6.0 # via nbconvert
depinfo==1.5.4 # via cobra
entrypoints==0.3 # via altair, nbconvert
escher==1.7.3 # via cameo
et-xmlfile==1.0.1 # via openpyxl
future==0.18.2 # via cameo, cobra
gnomic==1.0.1 # via cameo
grako==3.18.1 # via gnomic
idna==2.10 # via requests
importlib-metadata==2.0.0 # via jsonschema, pluggy, pytest
importlib-resources==3.0.0 # via cobra
inspyred==1.0.1 # via cameo
iprogress==0.4 # via cameo
ipykernel==5.3.4 # via ipywidgets, notebook
ipython-genutils==0.2.0 # via nbformat, notebook, traitlets
ipython==7.16.1 # via ipykernel, ipywidgets
ipywidgets==7.5.1 # via escher
jdcal==1.4.1 # via openpyxl
jedi==0.17.2 # via ipython
jinja2==2.11.2 # via altair, escher, nbconvert, notebook
joblib==0.16.0 # via scikit-learn
jsonschema==3.2.0 # via altair, escher, nbformat
jupyter-client==6.1.7 # via ipykernel, nbclient, notebook
jupyter-core==4.6.3 # via jupyter-client, nbconvert, nbformat, notebook
jupyterlab-pygments==0.1.1 # via nbconvert
kiwisolver==1.2.0 # via matplotlib
lazy-object-proxy==1.5.1 # via cameo
markupsafe==1.1.1 # via jinja2
matplotlib==3.3.2 # via -r requirements.in
mistune==0.8.4 # via nbconvert
more-itertools==8.5.0 # via pytest
mpmath==1.1.0 # via sympy
nbclient==0.5.0 # via nbconvert
nbconvert==6.0.6 # via notebook
nbformat==5.0.7 # via ipywidgets, nbclient, nbconvert, notebook
nest-asyncio==1.4.1 # via nbclient
networkx==1.9.1 # via -r requirements.in, cameo
notebook==6.1.4 # via widgetsnbextension
numexpr==2.7.1 # via cameo
numpy==1.19.2 # via -r requirements.in, altair, cameo, cobra, matplotlib, numexpr, pandas, scikit-learn, scipy
openpyxl==3.0.5 # via cameo
optlang==1.4.4 # via cameo, cobra
ordered-set==4.0.2 # via cameo
packaging==20.4 # via bleach, pytest
palettable==3.3.0 # via cameo
pandas==1.1.2 # via -r requirements.in, altair, cameo, cobra, escher
pandocfilters==1.4.2 # via nbconvert
parso==0.7.1 # via jedi
pexpect==4.8.0 # via ipython
pickleshare==0.7.5 # via ipython
pillow==7.2.0 # via matplotlib
pipdeptree==1.0.0 # via depinfo
pluggy==0.13.1 # via pytest
prometheus-client==0.8.0 # via notebook
prompt-toolkit==3.0.7 # via ipython
ptyprocess==0.6.0 # via pexpect, terminado
py==1.9.0 # via pytest
pycparser==2.20 # via cffi
pygments==2.7.1 # via ipython, jupyterlab-pygments, nbconvert
pyparsing==2.4.7 # via matplotlib, packaging
pyrsistent==0.17.3 # via jsonschema
pytest==4.6.11 # via -r requirements.in, escher
python-dateutil==2.8.1 # via jupyter-client, matplotlib, pandas
python-libsbml-experimental==5.18.1 # via cobra
pytz==2020.1 # via pandas
pyzmq==19.0.2 # via jupyter-client, notebook
requests==2.24.0 # via cameo
ruamel.yaml.clib==0.2.2 # via ruamel.yaml
ruamel.yaml==0.16.12 # via cobra
scikit-learn==0.23.2 # via sklearn
scipy==1.5.2 # via -r requirements.in, cameo, scikit-learn
send2trash==1.5.0 # via notebook
six==1.15.0 # via argon2-cffi, bleach, blessings, cameo, cobra, cycler, gnomic, iprogress, jsonschema, optlang, packaging, pytest, python-dateutil, traitlets
sklearn==0.0 # via -r requirements.in
swiglpk==4.65.1 # via cobra, optlang
sympy==1.6.2 # via optlang
terminado==0.9.1 # via notebook
testpath==0.4.4 # via nbconvert
threadpoolctl==2.1.0 # via scikit-learn
toolz==0.11.1 # via altair
tornado==6.0.4 # via ipykernel, jupyter-client, notebook, terminado
tqdm==4.49.0 # via -r requirements.in
traitlets==4.3.3 # via ipykernel, ipython, ipywidgets, jupyter-client, jupyter-core, nbclient, nbconvert, nbformat, notebook
urllib3==1.25.10 # via requests
wcwidth==0.2.5 # via prompt-toolkit, pytest
webencodings==0.5.1 # via bleach
widgetsnbextension==3.5.1 # via ipywidgets
zipp==3.2.0 # via importlib-metadata, importlib-resources
# The following packages are considered to be unsafe in a requirements file:
# pip
# setuptools