Error running constraint.sql on MIMIC-IV version 3.0

[kaveelim]

Prerequisites

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  • Checked the online documentation: https://mimic.mit.edu/
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Description

I've tried in buide a local mimic on a MacOs system with the MIMIC-IV version 3.0. At the step of running constraint.sql, there's an error...

psql:mimic-iv/buildmimic/postgres/constraint.sql:207: ERROR: insert or update on table "diagnoses_icd" violates foreign key constraint "diagnoses_icd_patients_fk" DETAIL: Key (subject_id)=(11404231) is not present in table "patients".

I've checked the shasum256 of the downloaded mimic files.
Upon inspection, there is no subject_id=11404231 in the patients.csv file but it is present in the diagnoses_icd.csv file.

[GregSilverman]

I was also just going to post this issue, but you beat me to it.

[alistairewj]

Thanks! Yes I think this was raised in another issue as well. Definitely a bug that we will be investigating in the coming weeks.

[GregSilverman]

@alistairewj any progress on this bug?

Thanks!