From 7a1885ebb2c89e977b4d3c02297e6757ddcf9dcc Mon Sep 17 00:00:00 2001
From: David Meunier <david_meunier_79@hotmail.fr>
Date: Wed, 7 Feb 2024 09:52:30 +0100
Subject: [PATCH] version .1 with mcr, to test if gihub is ok now with docker
 image

---
 .github/workflows/build_on_prerelease.yml | 83 ++++++++++++++++++++++-
 macapype/_version.py                      |  2 +-
 2 files changed, 83 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build_on_prerelease.yml b/.github/workflows/build_on_prerelease.yml
index fe604ca20..af3794841 100644
--- a/.github/workflows/build_on_prerelease.yml
+++ b/.github/workflows/build_on_prerelease.yml
@@ -60,7 +60,7 @@ jobs:
         uses: docker/build-push-action@ad44023a93711e3deb337508980b4b5e9bcdc5dc
         with:
           context: .
-          file: Dockerfile_testpypi_nomcr
+          file: Dockerfile_testpypi
           push: true
           tags: ${{ steps.meta.outputs.tags }}
           labels: ${{ steps.meta.outputs.labels }}
@@ -350,3 +350,84 @@ jobs:
         run:
             sudo rm -rf macaque_prime-de/results/derivatives/macapype_crop_aladin_ants_t1_t2
 
+
+  run-pretest-spm-macaque:
+    name: Running all existing pipelines in macapype_CI.zip (SPM_native macaque)
+    needs:  docker-build
+    runs-on: ubuntu-latest
+    timeout-minutes: 1440
+
+    steps:
+      - name: Pull latest docker image
+        run:
+            docker pull macatools/macapype:latest
+
+      - name: Download dataset
+        run: |
+
+            wget --no-check-certificate --content-disposition  "https://amubox.univ-amu.fr/public.php?service=files&t=KJ2L5j6L6orPXxM&download" -O macapype_CI.zip
+            unzip -o macapype_CI.zip -d macapype_CI
+
+            pwd
+            echo ""
+
+            ls macapype_CI
+            echo ""
+
+            ls macapype_CI/macaque_prime-de
+            echo ""
+
+            ls macapype_CI/marmo-marmobrain
+            echo ""
+
+      - name: Running test pipeline macaque_prime-de SPM_native T1 T2
+        run: |
+            docker run -i -v /home/runner/work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/macaque_prime-de -out /data/macaque_prime-de/results -soft SPM_native -species macaque -sub 032140 -ses 001 -deriv -pad -dt T1 T2
+
+            ls /home/runner/work/macapype/macapype/macapype_CI/macaque_prime-de/results/derivatives/macapype_crop_aladin_spm_t1_t2_native/sub-032140/ses-001/anat/
+            echo ""
+
+      - name: Cleaning dataset
+        run:
+            sudo rm -rf /home/runner/work/macapype/macapype/macapype_CI/macaque_prime-de/results/derivatives/macapype_crop_aladin_spm_t1_t2_native
+
+  run-pretest-spm-marmo:
+    name: Running all existing pipelines in macapype_CI.zip (SPM_native marmo)
+    needs:  docker-build
+    runs-on: ubuntu-latest
+    timeout-minutes: 1440
+
+    steps:
+      - name: Pull latest docker image
+        run:
+            docker pull macatools/macapype:latest
+
+      - name: Download dataset
+        run: |
+
+            wget --no-check-certificate --content-disposition  "https://amubox.univ-amu.fr/public.php?service=files&t=KJ2L5j6L6orPXxM&download" -O macapype_CI.zip
+            unzip -o macapype_CI.zip -d macapype_CI
+
+            pwd
+            echo ""
+
+            ls macapype_CI
+            echo ""
+
+            ls macapype_CI/macaque_prime-de
+            echo ""
+
+            ls macapype_CI/marmo-marmobrain
+            echo ""
+
+      - name: Running test pipeline marmo-marmobrain SPM_native_prep T1 T2
+        run: |
+
+            docker run -i -v /home/runner/work/macapype/macapype/macapype_CI:/data macatools/macapype:latest segment_pnh -data /data/marmo-marmobrain -out /data/marmo-marmobrain/results -soft SPM_native -species marmo -sub Percy -ses 01 -deriv -pad -dt T1 T2
+
+            ls /home/runner/work/macapype/macapype/macapype_CI/marmo-marmobrain/results/derivatives/macapype_crop_aladin_spm_t1_t2_native/sub-Percy/ses-01/anat/
+            echo ""
+
+      - name: Cleaning dataset
+        run:
+            sudo rm -rf /home/runner/work/macapype/macapype/macapype_CI/marmo-marmobrain/results/derivatives/macapype_crop_aladin_spm_t1_t2_native/
diff --git a/macapype/_version.py b/macapype/_version.py
index 5ea569bed..74300f95d 100644
--- a/macapype/_version.py
+++ b/macapype/_version.py
@@ -1,2 +1,2 @@
 
-__version__ = '0.3.5'
+__version__ = '0.3.5.1-rc1'