diff --git a/.clean_local_install.sh b/.clean_local_install.sh index ac6c397..6922ea4 100755 --- a/.clean_local_install.sh +++ b/.clean_local_install.sh @@ -18,9 +18,9 @@ EOF -rm -rf /home/matt/.pyenv/versions/kdb/lib/python3.10/site-packages/kmerdb /home/matt/.pyenv/versions/kdb/lib/python3.10/site-packages/kmerdb-*.egg-info /ffast2/kdb/kmerdb.egg-info /ffast2/kdb/build /ffast2/kdb/dist -rm -rf /home/matt/.pyenv/versions/3.10.1/envs/kdb/lib/python3.10/site-packages/kmerdb-* -cd /ffast2/kdb/ +rm -rf /home/matt/.pyenv/versions/kdb/lib/python3.11/site-packages/kmerdb /home/matt/.pyenv/versions/kdb/lib/python3.11/site-packages/kmerdb-*.egg-info /home/matt/Projects/kdb/kmerdb.egg-info /home/matt/Projects/kdb/build /home/matt/Projects/kdb/dist +rm -rf /home/matt/.pyenv/versions/3.11.7/envs/kdb/lib/python3.11/site-packages/kmerdb-* +cd /home/matt/Projects/kdb/ rm -rf dist build kmerdb.egg-info wheelhouse cd diff --git a/kmerdb/fileutil.py b/kmerdb/fileutil.py index 960d714..ab10cec 100644 --- a/kmerdb/fileutil.py +++ b/kmerdb/fileutil.py @@ -226,7 +226,7 @@ def open(filepath, mode="r", metadata=None, sort:bool=False, slurp:bool=False): class KDBReader(bgzf.BgzfReader): """ - A class that reads KDB files, potentially just for accessing header metadata, or for reading the entire contents into numpy arrays. + A class that reads .kdb files, potentially just for accessing header metadata, or for reading the entire contents into numpy arrays. :ivar filename: str @@ -757,7 +757,7 @@ def slurp(self, column_dtypes:str="uint64", count_dtypes:str="uint64", frequenci class KDBWriter(bgzf.BgzfWriter): """ - A wrapper class around Bio.bgzf.BgzfWriter to write a kdb file to disk. + A wrapper class around Bio.bgzf.BgzfWriter to write a .kdb file to disk. :ivar metadata: OrderedDict :ivar filename: str