From 2354f39ebbb59f0e329bd160886383eb6fc515dd Mon Sep 17 00:00:00 2001 From: SpaceCondor Date: Tue, 1 Oct 2024 11:06:18 -0400 Subject: [PATCH 1/2] Use Psycopg3 COPY --- README.md | 56 +- poetry.lock | 672 ++++++++++-------- pyproject.toml | 7 +- target_postgres/sinks.py | 69 +- target_postgres/target.py | 2 +- target_postgres/tests/core.py | 6 +- target_postgres/tests/test_sdk.py | 8 +- target_postgres/tests/test_target_postgres.py | 14 +- target_postgres/tests/test_types.py | 2 +- 9 files changed, 488 insertions(+), 348 deletions(-) diff --git a/README.md b/README.md index 176e3620..2859372d 100644 --- a/README.md +++ b/README.md @@ -20,34 +20,34 @@ Built with the [Meltano SDK](https://sdk.meltano.com) for Singer Taps and Target ## Settings -| Setting | Required | Default | Description | -| :------------------------------ | :------- | :---------------------------- | :------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | -| host | False | None | Hostname for postgres instance. Note if sqlalchemy_url is set this will be ignored. | -| port | False | 5432 | The port on which postgres is awaiting connection. Note if sqlalchemy_url is set this will be ignored. | -| user | False | None | User name used to authenticate. Note if sqlalchemy_url is set this will be ignored. | -| password | False | None | Password used to authenticate. Note if sqlalchemy_url is set this will be ignored. | -| database | False | None | Database name. Note if sqlalchemy_url is set this will be ignored. | -| sqlalchemy_url | False | None | SQLAlchemy connection string. This will override using host, user, password, port, dialect, and all ssl settings. Note that you must escape password special characters properly. See https://docs.sqlalchemy.org/en/20/core/engines.html#escaping-special-characters-such-as-signs-in-passwords | -| dialect+driver | False | postgresql+psycopg2 | Dialect+driver see https://docs.sqlalchemy.org/en/20/core/engines.html. Generally just leave this alone. Note if sqlalchemy_url is set this will be ignored. | -| default_target_schema | False | melty | Postgres schema to send data to, example: tap-clickup | -| activate_version | False | 1 | If set to false, the tap will ignore activate version messages. If set to true, add_record_metadata must be set to true as well. | -| hard_delete | False | 0 | When activate version is sent from a tap this specefies if we should delete the records that don't match, or mark them with a date in the `_sdc_deleted_at` column. This config option is ignored if `activate_version` is set to false. | -| add_record_metadata | False | 1 | Note that this must be enabled for activate_version to work!This adds _sdc_extracted_at, _sdc_batched_at, and more to every table. See https://sdk.meltano.com/en/latest/implementation/record_metadata.html for more information. | -| interpret_content_encoding | False | 0 | If set to true, the target will interpret the content encoding of the schema to determine how to store the data. Using this option may result in a more efficient storage of the data but may also result in an error if the data is not encoded as expected. | -| ssl_enable | False | 0 | Whether or not to use ssl to verify the server's identity. Use ssl_certificate_authority and ssl_mode for further customization. To use a client certificate to authenticate yourself to the server, use ssl_client_certificate_enable instead. Note if sqlalchemy_url is set this will be ignored. | -| ssl_client_certificate_enable | False | 0 | Whether or not to provide client-side certificates as a method of authentication to the server. Use ssl_client_certificate and ssl_client_private_key for further customization. To use SSL to verify the server's identity, use ssl_enable instead. Note if sqlalchemy_url is set this will be ignored. | -| ssl_mode | False | verify-full | SSL Protection method, see [postgres documentation](https://www.postgresql.org/docs/current/libpq-ssl.html#LIBPQ-SSL-PROTECTION) for more information. Must be one of disable, allow, prefer, require, verify-ca, or verify-full. Note if sqlalchemy_url is set this will be ignored. | -| ssl_certificate_authority | False | ~/.postgresql/root.crl | The certificate authority that should be used to verify the server's identity. Can be provided either as the certificate itself (in .env) or as a filepath to the certificate. Note if sqlalchemy_url is set this will be ignored. | -| ssl_client_certificate | False | ~/.postgresql/postgresql.crt | The certificate that should be used to verify your identity to the server. Can be provided either as the certificate itself (in .env) or as a filepath to the certificate. Note if sqlalchemy_url is set this will be ignored. | -| ssl_client_private_key | False | ~/.postgresql/postgresql.key | The private key for the certificate you provided. Can be provided either as the certificate itself (in .env) or as a filepath to the certificate. Note if sqlalchemy_url is set this will be ignored. | -| ssl_storage_directory | False | .secrets | The folder in which to store SSL certificates provided as raw values. When a certificate/key is provided as a raw value instead of as a filepath, it must be written to a file before it can be used. This configuration option determines where that file is created. | -| ssh_tunnel | False | None | SSH Tunnel Configuration, this is a json object | -| ssh_tunnel.enable | False | 0 | Enable an ssh tunnel (also known as bastion host), see the other ssh_tunnel.* properties for more details | -| ssh_tunnel.host | False | None | Host of the bastion host, this is the host we'll connect to via ssh | -| ssh_tunnel.username | False | None | Username to connect to bastion host | -| ssh_tunnel.port | False | 22 | Port to connect to bastion host | -| ssh_tunnel.private_key | False | None | Private Key for authentication to the bastion host | -| ssh_tunnel.private_key_password | False | None | Private Key Password, leave None if no password is set | +| Setting | Required | Default | Description | +| :------------------------------ | :------- |:-----------------------------| :------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | +| host | False | None | Hostname for postgres instance. Note if sqlalchemy_url is set this will be ignored. | +| port | False | 5432 | The port on which postgres is awaiting connection. Note if sqlalchemy_url is set this will be ignored. | +| user | False | None | User name used to authenticate. Note if sqlalchemy_url is set this will be ignored. | +| password | False | None | Password used to authenticate. Note if sqlalchemy_url is set this will be ignored. | +| database | False | None | Database name. Note if sqlalchemy_url is set this will be ignored. | +| sqlalchemy_url | False | None | SQLAlchemy connection string. This will override using host, user, password, port, dialect, and all ssl settings. Note that you must escape password special characters properly. See https://docs.sqlalchemy.org/en/20/core/engines.html#escaping-special-characters-such-as-signs-in-passwords | +| dialect+driver | False | postgresql+psycopg | Dialect+driver see https://docs.sqlalchemy.org/en/20/core/engines.html. Generally just leave this alone. Note if sqlalchemy_url is set this will be ignored. | +| default_target_schema | False | melty | Postgres schema to send data to, example: tap-clickup | +| activate_version | False | 1 | If set to false, the tap will ignore activate version messages. If set to true, add_record_metadata must be set to true as well. | +| hard_delete | False | 0 | When activate version is sent from a tap this specefies if we should delete the records that don't match, or mark them with a date in the `_sdc_deleted_at` column. This config option is ignored if `activate_version` is set to false. | +| add_record_metadata | False | 1 | Note that this must be enabled for activate_version to work!This adds _sdc_extracted_at, _sdc_batched_at, and more to every table. See https://sdk.meltano.com/en/latest/implementation/record_metadata.html for more information. | +| interpret_content_encoding | False | 0 | If set to true, the target will interpret the content encoding of the schema to determine how to store the data. Using this option may result in a more efficient storage of the data but may also result in an error if the data is not encoded as expected. | +| ssl_enable | False | 0 | Whether or not to use ssl to verify the server's identity. Use ssl_certificate_authority and ssl_mode for further customization. To use a client certificate to authenticate yourself to the server, use ssl_client_certificate_enable instead. Note if sqlalchemy_url is set this will be ignored. | +| ssl_client_certificate_enable | False | 0 | Whether or not to provide client-side certificates as a method of authentication to the server. Use ssl_client_certificate and ssl_client_private_key for further customization. To use SSL to verify the server's identity, use ssl_enable instead. Note if sqlalchemy_url is set this will be ignored. | +| ssl_mode | False | verify-full | SSL Protection method, see [postgres documentation](https://www.postgresql.org/docs/current/libpq-ssl.html#LIBPQ-SSL-PROTECTION) for more information. Must be one of disable, allow, prefer, require, verify-ca, or verify-full. Note if sqlalchemy_url is set this will be ignored. | +| ssl_certificate_authority | False | ~/.postgresql/root.crl | The certificate authority that should be used to verify the server's identity. Can be provided either as the certificate itself (in .env) or as a filepath to the certificate. Note if sqlalchemy_url is set this will be ignored. | +| ssl_client_certificate | False | ~/.postgresql/postgresql.crt | The certificate that should be used to verify your identity to the server. Can be provided either as the certificate itself (in .env) or as a filepath to the certificate. Note if sqlalchemy_url is set this will be ignored. | +| ssl_client_private_key | False | ~/.postgresql/postgresql.key | The private key for the certificate you provided. Can be provided either as the certificate itself (in .env) or as a filepath to the certificate. Note if sqlalchemy_url is set this will be ignored. | +| ssl_storage_directory | False | .secrets | The folder in which to store SSL certificates provided as raw values. When a certificate/key is provided as a raw value instead of as a filepath, it must be written to a file before it can be used. This configuration option determines where that file is created. | +| ssh_tunnel | False | None | SSH Tunnel Configuration, this is a json object | +| ssh_tunnel.enable | False | 0 | Enable an ssh tunnel (also known as bastion host), see the other ssh_tunnel.* properties for more details | +| ssh_tunnel.host | False | None | Host of the bastion host, this is the host we'll connect to via ssh | +| ssh_tunnel.username | False | None | Username to connect to bastion host | +| ssh_tunnel.port | False | 22 | Port to connect to bastion host | +| ssh_tunnel.private_key | False | None | Private Key for authentication to the bastion host | +| ssh_tunnel.private_key_password | False | None | Private Key Password, leave None if no password is set | A full list of supported settings and capabilities is available by running: `target-postgres --about` diff --git a/poetry.lock b/poetry.lock index 238c4097..3ab66834 100644 --- a/poetry.lock +++ b/poetry.lock @@ -43,44 +43,88 @@ files = [ [[package]] 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"^3.2.3" [tool.poetry.dependencies.singer-sdk] version = "~=0.40.0a1" @@ -109,4 +110,4 @@ banned-from = ["sqlalchemy"] sqlalchemy = "sa" [tool.ruff.lint.pydocstyle] -convention = "google" +convention = "google" \ No newline at end of file diff --git a/target_postgres/sinks.py b/target_postgres/sinks.py index f2f9e420..79f63b7f 100644 --- a/target_postgres/sinks.py +++ b/target_postgres/sinks.py @@ -119,6 +119,25 @@ def generate_temp_table_name(self): # in postgres, used a guid just in case we are using the same session return f"{str(uuid.uuid4()).replace('-', '_')}" + def generate_copy_statement( + self, + full_table_name: str | FullyQualifiedName, + columns: list[sa.Column], # type: ignore[override] + ) -> str: + """Generate a copy statement for bulk copy. + + Args: + full_table_name: the target table name. + columns: the target table columns. + + Returns: + A copy statement. + """ + columns_list = ", ".join(f'"{column.name}"' for column in columns) + sql: str = f'COPY "{full_table_name}" ({columns_list}) FROM STDIN' + + return sql + def bulk_insert_records( # type: ignore[override] self, table: sa.Table, @@ -145,19 +164,14 @@ def bulk_insert_records( # type: ignore[override] True if table exists, False if not, None if unsure or undetectable. """ columns = self.column_representation(schema) - insert: str = t.cast( - str, - self.generate_insert_statement( - table.name, - columns, - ), - ) - self.logger.info("Inserting with SQL: %s", insert) - # Only one record per PK, we want to take the last one - data_to_insert: list[dict[str, t.Any]] = [] + copy_statement: str = self.generate_copy_statement(table.name, columns) + self.logger.info("Inserting with SQL: %s", copy_statement) + data_to_copy: list[dict[str, t.Any]] = [] + + # If append only is False, we only take the latest record one per primary key if self.append_only is False: - insert_records: dict[tuple, dict] = {} # pk tuple: record + unique_copy_records: dict[tuple, dict] = {} # pk tuple: values for record in records: insert_record = { column.name: record.get(column.name) for column in columns @@ -165,15 +179,40 @@ def bulk_insert_records( # type: ignore[override] # No need to check for a KeyError here because the SDK already # guarantees that all key properties exist in the record. primary_key_tuple = tuple(record[key] for key in primary_keys) - insert_records[primary_key_tuple] = insert_record - data_to_insert = list(insert_records.values()) + unique_copy_records[primary_key_tuple] = insert_record + data_to_copy = list(unique_copy_records.values()) else: for record in records: insert_record = { column.name: record.get(column.name) for column in columns } - data_to_insert.append(insert_record) - connection.execute(insert, data_to_insert) + data_to_copy.append(insert_record) + + # Prepare to process the rows into csv. Use each column's bind_processor to do + # most of the work, then do the final construction of the csv rows ourselves + # to control exactly how values are converted and which ones are quoted. + column_bind_processors = { + column.name: column.type.bind_processor(connection.dialect) + for column in columns + } + + # Use copy to run the copy statement. + # https://www.psycopg.org/psycopg3/docs/basic/copy.html + with connection.connection.cursor().copy(copy_statement) as copy: # type: ignore[attr-defined] + for row in data_to_copy: + processed_row = [] + for row_column_name in row: + if column_bind_processors[row_column_name] is not None: + processed_row.append( + column_bind_processors[row_column_name]( + row[row_column_name] + ) + ) + else: + processed_row.append(row[row_column_name]) + + copy.write_row(processed_row) + return True def upsert( diff --git a/target_postgres/target.py b/target_postgres/target.py index 2cc0b714..9fd08915 100644 --- a/target_postgres/target.py +++ b/target_postgres/target.py @@ -150,7 +150,7 @@ def __init__( th.Property( "dialect+driver", th.StringType, - default="postgresql+psycopg2", + default="postgresql+psycopg", description=( "Dialect+driver see " + "https://docs.sqlalchemy.org/en/20/core/engines.html. " diff --git a/target_postgres/tests/core.py b/target_postgres/tests/core.py index c7d79c7a..b9d59b6c 100644 --- a/target_postgres/tests/core.py +++ b/target_postgres/tests/core.py @@ -8,7 +8,7 @@ def postgres_config(): return { - "dialect+driver": "postgresql+psycopg2", + "dialect+driver": "postgresql+psycopg", "host": "localhost", "user": "postgres", "password": "postgres", @@ -29,7 +29,7 @@ def postgres_config(): def postgres_config_no_ssl(): return { - "dialect+driver": "postgresql+psycopg2", + "dialect+driver": "postgresql+psycopg", "host": "localhost", "user": "postgres", "password": "postgres", @@ -43,7 +43,7 @@ def postgres_config_no_ssl(): def postgres_config_ssh_tunnel(): return { - "sqlalchemy_url": "postgresql://postgres:postgres@10.5.0.5:5432/main", + "sqlalchemy_url": "postgresql+psycopg://postgres:postgres@10.5.0.5:5432/main", "ssh_tunnel": { "enable": True, "host": "127.0.0.1", diff --git a/target_postgres/tests/test_sdk.py b/target_postgres/tests/test_sdk.py index 372cca09..07ceb496 100644 --- a/target_postgres/tests/test_sdk.py +++ b/target_postgres/tests/test_sdk.py @@ -10,22 +10,18 @@ TargetCamelcaseTest, TargetCliPrintsTest, TargetDuplicateRecords, - TargetEncodedStringData, TargetInvalidSchemaTest, - TargetMultipleStateMessages, TargetNoPrimaryKeys, TargetOptionalAttributes, TargetRecordBeforeSchemaTest, TargetRecordMissingKeyProperty, TargetRecordMissingOptionalFields, - TargetRecordMissingRequiredProperty, TargetSchemaNoProperties, TargetSchemaUpdates, TargetSpecialCharsInAttributes, ) from target_postgres.target import TargetPostgres - from .core import create_engine, postgres_config target_tests = TestSuite( @@ -62,7 +58,9 @@ class BasePostgresSDKTests: @pytest.fixture() def connection(self, runner): engine = create_engine(runner) - return engine.connect() + with engine.connect() as conn: + yield conn + engine.dispose() SDKTests = get_target_test_class( diff --git a/target_postgres/tests/test_target_postgres.py b/target_postgres/tests/test_target_postgres.py index 7f474005..ebeccce0 100644 --- a/target_postgres/tests/test_target_postgres.py +++ b/target_postgres/tests/test_target_postgres.py @@ -142,6 +142,7 @@ def verify_data( sqlalchemy.text(f"SELECT COUNT(*) FROM {full_table_name}") ) assert result.first()[0] == number_of_rows + engine.dispose() def test_sqlalchemy_url_config(postgres_config_no_ssl): @@ -157,7 +158,7 @@ def test_sqlalchemy_url_config(postgres_config_no_ssl): port = postgres_config_no_ssl["port"] config = { - "sqlalchemy_url": f"postgresql://{user}:{password}@{host}:{port}/{database}" + "sqlalchemy_url": f"postgresql+psycopg://{user}:{password}@{host}:{port}/{database}" } tap = SampleTapCountries(config={}, state=None) target = TargetPostgres(config=config) @@ -167,7 +168,7 @@ def test_sqlalchemy_url_config(postgres_config_no_ssl): def test_port_default_config(): """Test that the default config is passed into the engine when the config doesn't provide it""" config = { - "dialect+driver": "postgresql+psycopg2", + "dialect+driver": "postgresql+psycopg", "host": "localhost", "user": "postgres", "password": "postgres", @@ -186,12 +187,13 @@ def test_port_default_config(): engine.url.render_as_string(hide_password=False) == f"{dialect_driver}://{user}:{password}@{host}:5432/{database}" ) + engine.dispose() def test_port_config(): """Test that the port config works""" config = { - "dialect+driver": "postgresql+psycopg2", + "dialect+driver": "postgresql+psycopg", "host": "localhost", "user": "postgres", "password": "postgres", @@ -211,6 +213,7 @@ def test_port_config(): engine.url.render_as_string(hide_password=False) == f"{dialect_driver}://{user}:{password}@{host}:5433/{database}" ) + engine.dispose() # Test name would work well @@ -402,6 +405,7 @@ def test_no_primary_keys(postgres_target): singer_file_to_target(file_name, postgres_target) verify_data(postgres_target, table_name, 16) + engine.dispose() def test_no_type(postgres_target): @@ -511,6 +515,7 @@ def test_anyof(postgres_target): # {"anyOf":[{"type":"string"},{"type":"integer"},{"type":"null"}]} if column.name == "legacy_id": assert isinstance(column.type, TEXT) + engine.dispose() def test_new_array_column(postgres_target): @@ -621,6 +626,7 @@ def test_activate_version_hard_delete(postgres_config_no_ssl): assert result.rowcount == 9 singer_file_to_target(file_name, pg_hard_delete_true) + engine.dispose() # Should remove the 2 records we added manually with engine.connect() as connection: @@ -692,6 +698,7 @@ def test_activate_version_soft_delete(postgres_config_no_ssl): # South America row should not have been modified, but it would have been prior # to the fix mentioned in #204 and implemented in #240. assert south_america == result.first()._asdict() + engine.dispose() def test_activate_version_no_metadata(postgres_config_no_ssl): @@ -742,6 +749,7 @@ def test_activate_version_deletes_data_properly(postgres_target): with engine.connect() as connection: result = connection.execute(sqlalchemy.text(f"SELECT * FROM {full_table_name}")) assert result.rowcount == 0 + engine.dispose() def test_reserved_keywords(postgres_target): diff --git a/target_postgres/tests/test_types.py b/target_postgres/tests/test_types.py index 7e58741b..8741d5ff 100644 --- a/target_postgres/tests/test_types.py +++ b/target_postgres/tests/test_types.py @@ -11,7 +11,7 @@ def connector(): """Create a PostgresConnector instance.""" return PostgresConnector( config={ - "dialect+driver": "postgresql+psycopg2", + "dialect+driver": "postgresql+psycopg", "host": "localhost", "port": "5432", "user": "postgres", From fbe087bf3efbd4392985a0518b72f63c8f7e60c1 Mon Sep 17 00:00:00 2001 From: Conner Panarella Date: Wed, 2 Oct 2024 13:49:16 -0400 Subject: [PATCH 2/2] Update pyproject.toml MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Edgar Ramírez Mondragón <16805946+edgarrmondragon@users.noreply.github.com> --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 4618bf96..b2e732ff 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -110,4 +110,4 @@ banned-from = ["sqlalchemy"] sqlalchemy = "sa" [tool.ruff.lint.pydocstyle] -convention = "google" \ No newline at end of file +convention = "google"