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README.txt
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README.txt
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README file for
J. Neural Eng. 2 (2005) 17–34
simulation .m files
These files were created with and run with Matlab version 7.0 (R14), with
Statistical and Signal Processing toolboxes.
Copy all the m-files to a single directory on your computer. To use them,
set the Matlab "Current Directory" to the path where the m-files reside, OR
from any "Current Directory" add the path where the m-files reside by typing
>> addpath C:\Path\Where\The\Mfiles\Are
(for example) at the Matlab command prompt.
Fig2.m - run this script to reproduce Figure 2 (p. 20)
- calls twitch.m (function)
Fig3.m - run this script to reproduce Figure 3 (p. 21)
- calls AxonThresh.m (function)
Fig4.m - run this script to reproduce Figure 4 (p. 21)
- output will vary due to random distribution of axon properties
- Statistical toolbox required
- calls AxonThresh.m (function)
- calls AxonThreshPairs.m (function)
Fig5.m - run this script to reproduce Figure 5 (p. 22)
- output will vary due to random selection of twitch sizes
- Statistical toolbox required
- calls twitch.m (function)
Fig6.m - run this script to reproduce Figure 6 (p. 23)
- output will vary due to random distribution of axon thresholds
- Statistical toolbox required
- calls AxonThresh.m (function)
- calls AxonThreshPairs.m (function)
Fig7.m - run this script to reproduce Figure 7 (p. 24)
- output will vary due to random properties of motor unit pool
- Statistical toolbox required
- calls AxonThresh.m (function)
- calls AxonThreshPairs.m (function)
- calls IM_pool.m (function)
Fig9.m - run this script to reproduce Figure 9 (p. 26)
- simulation is time-consuming (2.4h on 2.6GHz Celeron w/ 512MB RAM)
- output will vary due to random properties of motor unit pool
- Statistical toolbox required
- calls AxonThresh.m (function)
- calls AxonThreshPairs.m (function)
- calls IM_pool.m (function)
- calls GetMBBAmps.m (script)
Fig12.m - run this script to reproduce Figure 12 (p. 28)
- simulation is time-consuming (>24h on 2.6GHz Celeron w/ 512MB RAM)
- output will vary due to random properties of motor unit pool,
and randomly selected motor unit samples
- Statistical toolbox required
- Signal Processing toolbox required
- calls MVCquicktest.m (script)
- calls STA_pool2.m (function)
- calls twitch.m (function)
- calls muap2.m (function)
Support files:
- AxonThresh.m
- calls Visolve.m
- AxonThreshPairs.m
- calls Visolve.m
- GetMBBAmps.m
- IM_pool.m
- calls twitch.m
- calls muap2.m
- muap2.m
- muap2_memory.m
- replaces muap2.m in STA_pool2.m (if OUT OF MEMORY during Fig12.m)
- recommend using muap2.m if possible as *_memory.m functions
increase run time of Fig12.m substantially
- MVCquicktest.m
- STA_pool2.m
- calls twitch.m OR twitch_memory.m
- calls muap2.m OR muap2_memory.m
- twitch.m
- twitch_memory.m
- replaces twitch.m in STA_pool2.m (if OUT OF MEMORY during Fig12.m)
- recommend using twitch.m if possible as *_memory.m functions
increase run time of Fig12.m substantially
- Visolve.m
Lora Major
June 3, 2005
(780) 492-4351