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Parameters #1

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DCGenomics opened this issue Mar 22, 2017 · 1 comment

Contributor

DCGenomics commented Mar 22, 2017

For viral identification -- parameters need to be tested, and likely will be stricter than default.

For novel prediction, -- parameters need to be tested, and likely will be looser or same as default.

Can likely delete exact matches from identification runs.

Collaborator

pcantalupo commented Mar 22, 2017 •

edited

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can use these tables to benchmark this:
http://www.nature.com/articles/srep18081/tables/3
Table 3 of this paper.

To obtain lower % id alignments, lower gapextend and penalty options

others:
SRR1161435 (west nile virus)

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