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Makefile
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Makefile
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################################################################################
#
# Makefile for RMG
#
################################################################################
# The directory in which the source files can be found
SOURCEDIR=$(CURDIR)/source
# The directory in which to place temporary compiled files
BUILDDIR=$(CURDIR)/build
# The directory in which to place compiled executables and JAR files
BINDIR=$(CURDIR)/bin
# The directory in which to run RMG (used for the test)
RUNDIR=$(CURDIR)/run
# The Fortran 90 compiler to use and flags to use when compiling Fortran code
# Call with 'make F90=g95' if you want to use g95
# or 'make F90=gfortran' for GNU Fortran (recommended)
# Here we set the default
F90=gfortran
# Some tests
uname_S := $(shell sh -c 'uname -s 2>/dev/null || echo not')
uname_M := $(shell sh -c 'uname -m 2>/dev/null || echo not')
f90version := $(shell $(F90) --version 2>/dev/zero)
gfortranversion := $(shell expr "$(f90version)" : 'GNU Fortran.*\([0-9]\.[0-9]\.[0-9]\)' )
# Detect 64 bit MacOS X for some optimizations
ifeq ($(uname_S),Darwin)
ifeq ($(uname_M),x86_64)
MACOS = True
endif
endif
# If running G95
ifeq ($(shell expr "$(f90version)" : 'G95'), 3)
F90FLAGS = -fbounds-check -ftrace=full -fmod=$(BUILDDIR) -Wall -O3
F90FLAGS_NDEBUG = -fmod=$(BUILDDIR) -ftrace=full # used for dassl and daspk
endif ###### END OF G95 SETTINGS
# If running gfortran
ifeq ($(shell expr "$(f90version)" : 'GNU Fortran'), 11)
# --fpe-trap=invalid,zero,underflow,overflow
# The above flag causes problems at least with fame. Maybe a bug in gfortran? (Maybe a bug in fame.)
F90FLAGS = -ftrapv -fbounds-check -frange-check \
-ggdb -J""$(BUILDDIR)"" -O3 -Wall -Wno-unused
# if gfortran >= 4.3 then add -fbacktrace (it's not supported in earlier versions)
ifeq ($(shell expr "$(f90version)" : '[4-9]\.[3-9]'),3)
F90FLAGS += -fbacktrace
endif
# Call as `make MACOS=true F90=gfortran` if you want MacOS X 10.6+ 64-bit intel core2 features
ifdef MACOS
F90FLAGS += -arch x86_64 -march=core2
F90_EXTRA_LDFLAGS += -framework vecLIB
endif
F90FLAGS_NDEBUG = $(F90FLAGS) # used for dassl and daspk
endif ###### END OF gfortran SETTINGS
# these are added to the LDFLAGS of the subsidiary makefiles
#F90_EXTRA_LDFLAGS = -L/home/local/lib -lg2c # required for Monch
################################################################################
# Default is to build those that come complete with the RMG distribution
base: dirs fame frankie GATPFit dassl RMG
# Make just the Fortran dependencies (i.e. not the Java)
fortran: dirs fame frankie GATPFit dassl
# Make all the Fortran (including DASPK)
all_fortran: dirs fame frankie GATPFit dassl daspk
# You can also build everything
all: dirs fame frankie GATPFit dassl daspk RMG inchi symmetry
RMG: dirs
mkdir -p $(BUILDDIR)/RMG
ant clean # we don't trust ant to spot what needs doing!
#ant compile
ant jar
fame: dirs
make -C $(SOURCEDIR)/fame SOURCEDIR=$(SOURCEDIR)/fame BUILDDIR=$(BUILDDIR)/fame BINDIR=$(BINDIR) F90=$(F90) F90FLAGS="$(F90FLAGS)" F90_EXTRA_LDFLAGS="$(F90_EXTRA_LDFLAGS)"
frankie: dirs
make -C $(SOURCEDIR)/frankie SOURCEDIR=$(SOURCEDIR)/frankie BUILDDIR=$(BUILDDIR)/frankie BINDIR=$(BINDIR) F90=$(F90) F90FLAGS="$(F90FLAGS)" F90_EXTRA_LDFLAGS="$(F90_EXTRA_LDFLAGS)"
dassl: dirs
make -C $(SOURCEDIR)/dassl SOURCEDIR=$(SOURCEDIR)/dassl BUILDDIR=$(BUILDDIR)/dassl BINDIR=$(BINDIR) F90=$(F90) F90FLAGS="$(F90FLAGS_NDEBUG)" F90_EXTRA_LDFLAGS="$(F90_EXTRA_LDFLAGS)"
daspk: dirs
make -C $(SOURCEDIR)/daspk SOURCEDIR=$(SOURCEDIR)/daspk BUILDDIR=$(BUILDDIR)/daspk BINDIR=$(BINDIR) F90=$(F90) F90FLAGS="$(F90FLAGS_NDEBUG)" F90_EXTRA_LDFLAGS="$(F90_EXTRA_LDFLAGS)"
GATPFit: dirs
make -C $(SOURCEDIR)/GATPFit SOURCEDIR=$(SOURCEDIR)/GATPFit BUILDDIR=$(BUILDDIR)/GATPFit BINDIR=$(BINDIR) F90=$(F90) F90FLAGS="$(F90FLAGS)" F90_EXTRA_LDFLAGS="$(F90_EXTRA_LDFLAGS)"
dirs:
mkdir -p $(BUILDDIR)
mkdir -p $(BINDIR)
# GET AND BUILD INCHI SUPPORT
inchi: $(BINDIR)/cInChI-1
$(BINDIR)/cInChI-1: $(BUILDDIR)/InChI-1-software-1-02-beta
make -C $(BUILDDIR)/InChI-1-software-1-02-beta/INCHI_API/gcc_makefile
cp $(BUILDDIR)/InChI-1-software-1-02-beta/INCHI_API/gcc_makefile/cInChI-1 $(BINDIR)/
$(BUILDDIR)/InChI-1-software-1-02-beta: $(BUILDDIR)/inchi102b.zip
cd $(BUILDDIR); unzip inchi102b.zip
$(BUILDDIR)/inchi102b.zip:
cd $(BUILDDIR); wget http://www.iupac.org/fileadmin/user_upload/publications/e-resources/inchi/1.02beta/inchi102b.zip
# was at http://old.iupac.org/inchi/download/inchi102b.zip
# END OF INCHI SUPPORT
# GET AND BUILD SYMMETRY
symmetry: $(BINDIR)/SYMMETRY.EXE
$(BINDIR)/SYMMETRY.EXE: $(BUILDDIR)/symmetry/symmetry.c
cd $(BUILDDIR)/symmetry/; cc -o $(BINDIR)/SYMMETRY.EXE -O3 -ansi -Wall symmetry.c -lm
$(BUILDDIR)/symmetry/symmetry.c: $(BUILDDIR)/symmetry.zip
cd $(BUILDDIR); unzip symmetry.zip -d symmetry
$(BUILDDIR)/symmetry.zip:
cd $(BUILDDIR); wget http://www.cobalt.chem.ucalgary.ca/ps/symmetry/symmetry.zip
# END OF SYMMETRY SUPPORT
clean:
make -C $(SOURCEDIR)/fame clean SOURCEDIR=$(SOURCEDIR)/fame BUILDDIR=$(BUILDDIR)/fame BINDIR=$(BINDIR)
make -C $(SOURCEDIR)/frankie clean SOURCEDIR=$(SOURCEDIR)/frankie BUILDDIR=$(BUILDDIR)/frankie BINDIR=$(BINDIR)
make -C $(SOURCEDIR)/dassl clean SOURCEDIR=$(SOURCEDIR)/dassl BUILDDIR=$(BUILDDIR)/dassl BINDIR=$(BINDIR)
make -C $(SOURCEDIR)/daspk clean SOURCEDIR=$(SOURCEDIR)/daspk BUILDDIR=$(BUILDDIR)/daspk BINDIR=$(BINDIR)
make -C $(SOURCEDIR)/GATPFit clean SOURCEDIR=$(SOURCEDIR)/GATPFit BUILDDIR=$(BUILDDIR)/GATPFit BINDIR=$(BINDIR)
ant clean
rm -rf $(BUILDDIR)
rm -rf $(BINDIR)
rm -rf $(RUNDIR)
# Run a test case
test:
mkdir -p $(RUNDIR)
cp examples/RMG/hexadiene/condition.txt $(RUNDIR)
cp examples/RMG/hexadiene/RMG.sh $(RUNDIR)
export RMG=$(CURDIR); cd $(RUNDIR); ./RMG.sh;
echo "Results saved to $(RUNDIR)"
# Run all test cases
test_all:
export RMG=$(CURDIR); scripts/test_all.sh;
help:
@echo ""
@echo "This makefile can be used to build all of the code required by RMG."
@echo ""
@echo "Typing \`make\` with no arguments will make all of the executables that come"
@echo "completely bundled with RMG (indicated in the list below with an asterisk)."
@echo ""
@echo "Typing 'make test' will run an example file in the folder 'run'."
@echo ""
@echo "Typing \`make clean\` will remove all object files, modules, and executables"
@echo "for all of the applications, and the 'run' folder."
@echo ""
@echo "Otherwise individual dependencies can be specified using \`make <target>\`"
@echo "where <target> is one of:"
@echo ""
@echo "* fame to make fame, the pressure dependence code"
@echo "* frankie to make frankie, the density of states code"
@echo "* dassl to make dassl, the basic differential equation solver"
@echo " daspk to make daspk, the diff. eq. solver with sensitivity"
@echo "* GATPFit to make GATPFit"
@echo "* RMG to make RMG"
@echo " inchi to get and make InChI support (attempts to download from iupac)"
@echo " symmetry to get and make SYMMETRY (attempts to download from ucalgary.ca)"
@echo ""