diff --git a/bin/C2C b/bin/C2C index d5eb523..4a5313c 100755 --- a/bin/C2C +++ b/bin/C2C @@ -251,9 +251,7 @@ def argument_parser(): def main(): args = argument_parser().parse_args() - if args.pipeline == "muscle_adipose_tissue": - process_2d(args, MuscleAdiposeTissueFullPipelineBuilder) - elif args.pipeline == "spine_muscle_adipose_tissue": + if args.pipeline == "spine_muscle_adipose_tissue": process_3d(args, SpineMuscleAdiposeTissuePipelineBuilder) elif args.pipeline == "spine": process_3d(args, SpinePipelineBuilder)