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Expression levels differ between file TRON_expression_values.txt and 20240226_TCLP_HLA_data.csv #3

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upgradedavid opened this issue Mar 21, 2024 · 0 comments

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@upgradedavid
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HLA-A RPKM values for cell line PC-3 are different between these files:

TRON_expression_values.txt
645.4451

20240226_TCLP_HLA_data.csv
Here, we have two rows with different alleles, where one doesn't have RPKM, and the other one has the expected values described in the publication:
109.46

Are the values just differently normalized? What do the values from TRON_expression_values.txt represent?

I've been working with some RPKM values from the initial interface and desperately wanted to check on a few other genes for comparison. It would be amazing to finally be able to do that!

Thank you so much!

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