This repository provides code and data related to the manuscript "Multiple instance learning to predict immune checkpoint blockade efficacy using neoantigen candidates" (https://doi.org/10.1101/2022.05.06.490587)
- Example scripts to run miles can be found here here.
- These are slurm scripts to run MILES with different hyperparameter settings on a hpc cluster with slurm
- MILES_cross_validation.py is the python script that is called by the slurm scripts and runs MILES with nested cross validation
- Raw results from MILES can be found here