cbe.config

//Profile config names for nf-core/configs
params {
    config_profile_description = 'CLIP BATCH ENVIRONMENT (CBE) cluster profile provided by nf-core/configs'
    config_profile_contact     = 'Patrick Hüther (@phue)'
    config_profile_url         = 'https://clip.science'
}

process {
        resourceLimits = [
            memory: 1800.GB,
            cpus: 36,
            time: 14.d
        ]
    executor       = 'slurm'
    queue          = { task.memory <= 120.GB ? 'c' : 'm' }
    module         = ['build-env/.f2021', 'build-env/f2021', 'anaconda3/2021.11']
    clusterOptions = { (task.queue == 'g' ? '--gres gpu:1 ' : '') << (task.queue == 'c' & task.time <= 1.h ? '--qos rapid' : (task.time <= 8.h ? '--qos short' : (task.time <= 48.h ? '--qos medium' : '--qos long'))) }
}

singularity {
    enabled  = true
    cacheDir = '/resources/containers'
}

params {
    params.max_time   = 14.d
    params.max_cpus   = 36
    params.max_memory = 1800.GB
    igenomes_base     = '/resources/references/igenomes'
}