munin.config

// sarek/munin specific profile config

params {
    // Specific nf-core/configs params
    config_profile_contact     = 'Maxime Garcia (@maxulysse)'
    config_profile_description = 'nf-core/sarek MUNIN profile provided by nf-core/configs'
    config_profile_url         = 'https://ki.se/forskning/barntumorbanken'

    // Specific nf-core/sarek params
    annotation_cache           = true
    cadd_cache                 = true
    cadd_indels                = '/data1/cache/CADD/v1.4/InDels.tsv.gz'
    cadd_indels_tbi            = '/data1/cache/CADD/v1.4/InDels.tsv.gz.tbi'
    cadd_wg_snvs               = '/data1/cache/CADD/v1.4/whole_genome_SNVs.tsv.gz'
    cadd_wg_snvs_tbi           = '/data1/cache/CADD/v1.4/whole_genome_SNVs.tsv.gz.tbi'
    pon                        = '/data1/PON/vcfs/BTB.PON.vcf.gz'
    pon_index                  = '/data1/PON/vcfs/BTB.PON.vcf.gz.tbi'
    snpeff_cache               = '/data1/cache/snpEff/'
    vep_cache                  = '/data1/cache/VEP/'
    vep_cache_version          = '95'
}

// Specific nf-core/sarek process configuration
process {
    withLabel: sentieon {
        module    = { params.sentieon ? 'sentieon/202112.02' : null }
        container = { params.sentieon ? null : container }
    }
}