diff --git a/23-statistics.md b/23-statistics.md index a4ba19447..98921d8b1 100644 --- a/23-statistics.md +++ b/23-statistics.md @@ -34,16 +34,20 @@ source: Rmd ``` r # We will need these libraries and this data later. library(tidyverse) +library(ggplot2) + # loading data lon_dims_imd_2019 <- read.csv("data/English_IMD_2019_Domains_rebased_London_by_CDRC.csv") -# Commenting out as not used in this version -# library(lubridate) -#library(gapminder) + # create a binary membership variable for City of London (for later examples) lon_dims_imd_2019 <- lon_dims_imd_2019 %>% mutate(city = la19nm == "City of London") ``` -We are going to use the data from the gapminder package. We have added a variable *European* indicating if a country is in Europe. +We are going to use the data from the Consumer Data Research Centre, specifically the London IMD 2019 (English IMD 2019 Domains rebased) data. +Atribution: Data provided by the Consumer Data Research Centre, an ESRC Data Investment: ES/L011840/1, ES/L011891/1 + +The statistical unit areas used to provide indices of relative deprivation across the country are Lower layer Super Output Areas (LSOAs), dimensions of depravation include income, employment, education, health, crime, barriers to housing and services, and the living environment. +We have added a variable *city* indicating if an LSOA is within the City of London, or not. ## The big picture @@ -402,7 +406,7 @@ It all starts with a hypothesis ## Comparing means -Is there an absolute difference between the income ranks of the Lower-layer Super Output Areas +Is there an absolute difference between the income ranks of the Lower-layer Super Output Areas? ``` r @@ -483,14 +487,6 @@ While the t-test is sufficient where there are two levels of the IV, for situati ``` r -# quantile(gapminder$gdpPercap) -# IQR(gapminder$gdpPercap) - -# gapminder$gdpGroup <- cut(gapminder$gdpPercap, breaks = c(241.1659, 1202.0603, 3531.8470, 9325.4623, 113523.1329), labels = FALSE) - -# gapminder$gdpGroup <- factor(gapminder$gdpGroup) - -# anovamodel <- aov(gapminder$pop ~ gapminder$gdpGroup) anovamodel <- aov(lon_dims_imd_2019$health_london_rank ~ lon_dims_imd_2019$la19nm) summary(anovamodel) ``` @@ -1580,7 +1576,6 @@ The most common use of regression modelling is to explore the relationship betwe ``` r -# cor.test(gapminder$gdpPercap, gapminder$lifeExp) cor.test(lon_dims_imd_2019$Income_london_rank, lon_dims_imd_2019$health_london_rank) ``` @@ -1599,7 +1594,6 @@ sample estimates: ``` ``` r -# ggplot(gapminder, aes(gdpPercap, log(lifeExp))) + ggplot(lon_dims_imd_2019, aes(Income_london_rank, health_london_rank)) + geom_point() + geom_smooth() @@ -1642,7 +1636,7 @@ F-statistic: 8632 on 1 and 4833 DF, p-value: < 2.2e-16 ## Regression with a categorical IV (the t-test) -Run the following code chunk and compare the results to the t test conducted earlier. +Run the following code chunk and compare the results to the t-test conducted earlier. ``` r diff --git a/config.yaml b/config.yaml new file mode 100644 index 000000000..55e40ba14 --- /dev/null +++ b/config.yaml @@ -0,0 +1,112 @@ +#------------------------------------------------------------ +# Values for this lesson. +#------------------------------------------------------------ + +# Which carpentry is this (swc, dc, lc, or cp)? +# swc: Software Carpentry +# dc: Data Carpentry +# lc: Library Carpentry +# cp: Carpentries (to use for instructor training for instance) +# incubator: The Carpentries Incubator +carpentry: 'swc' + +# Overall title for pages. +title: 'R for AMR Epidemiology' + +# Date the lesson was created (YYYY-MM-DD, this is empty by default) +created: '2015-04-18' + +# Comma-separated list of keywords for the lesson +keywords: 'software, data, lesson, The Carpentries' + +# Life cycle stage of the lesson +# possible values: pre-alpha, alpha, beta, stable +life_cycle: 'stable' + +# License of the lesson materials (recommended CC-BY 4.0) +license: 'CC-BY 4.0' + +# Link to the source repository for this lesson +source: 'https://github.com/UCL-ARC/r-amr-epidemiology' + +# Default branch of your lesson +branch: 'main' + +# Who to contact if there are any issues +contact: 'ARC.Education@ucl.ac.uk' + +# Navigation ------------------------------------------------ +# +# Use the following menu items to specify the order of +# individual pages in each dropdown section. Leave blank to +# include all pages in the folder. +# +# Example ------------- +# +# episodes: +# - introduction.md +# - first-steps.md +# +# learners: +# - setup.md +# +# instructors: +# - instructor-notes.md +# +# profiles: +# - one-learner.md +# - another-learner.md + +# Order of episodes in your lesson +episodes: +- 01-rstudio-intro.Rmd +- 02-project-intro.Rmd +- 03-seeking-help.Rmd +- 04-data-structures-part1.Rmd +- 05-data-structures-part2.Rmd +- 06-filedir.md +- 07-basics.md +- 08-setup.md +- 09-create.md +- 10-changes.md +- 11-history.md +- 12-ignore.md +- 13-supplemental-rstudio.md +- 14-data-subsetting.Rmd +# - 07-control-flow.Rmd +- 15-plot-ggplot2.Rmd +# - 09-vectorization.Rmd +# - 10-functions.Rmd +- 16-writing-data.Rmd +- 17-github.md +- 18-collab.md +- 19-conflict.md +- 20-dplyr.Rmd +- 21-tidyr.Rmd +# basic stats +- 22-knitr-markdown.Rmd +- 23-statistics.Rmd +# 23-regression +# 24-logregression +# 25-broom +# 26-r-sql +- 27-wrap-up.Rmd + +# Information for Learners +learners: + +# Information for Instructors +instructors: + +# Learner Profiles +profiles: + +# Customisation --------------------------------------------- +# +# This space below is where custom yaml items (e.g. pinning +# sandpaper and varnish versions) should live + + +url: 'https://UCL-ARC.github.io/R-AMR-Epidemiology' +analytics: carpentries +lang: en diff --git a/fig/23-statistics-rendered-unnamed-chunk-3-1.png b/fig/23-statistics-rendered-unnamed-chunk-3-1.png index 7a295c4b6..ba90b2958 100644 Binary files a/fig/23-statistics-rendered-unnamed-chunk-3-1.png and b/fig/23-statistics-rendered-unnamed-chunk-3-1.png differ diff --git a/fig/23-statistics-rendered-unnamed-chunk-3-2.png b/fig/23-statistics-rendered-unnamed-chunk-3-2.png index 67669e540..b777b24db 100644 Binary files a/fig/23-statistics-rendered-unnamed-chunk-3-2.png and b/fig/23-statistics-rendered-unnamed-chunk-3-2.png differ diff --git a/md5sum.txt b/md5sum.txt index 9a5b71b56..467432b7e 100644 --- a/md5sum.txt +++ b/md5sum.txt @@ -25,7 +25,7 @@ "episodes/20-dplyr.Rmd" "fc20e35f891f0bb624647d69816c3220" "site/built/20-dplyr.md" "2024-08-07" "episodes/21-tidyr.Rmd" "1c59c3bea4cec5e0c47654a546294f07" "site/built/21-tidyr.md" "2024-08-07" "episodes/22-knitr-markdown.Rmd" "0c63ce92263a32f19fbec9f7b619b682" "site/built/22-knitr-markdown.md" "2024-08-07" -"episodes/23-statistics.Rmd" "c1979deb2d61baa7368d2c3cd557e854" "site/built/23-statistics.md" "2024-08-07" +"episodes/23-statistics.Rmd" "0681b5824fc6281b7a112de721db7e0d" "site/built/23-statistics.md" "2024-08-08" "episodes/27-wrap-up.Rmd" "c5ce0d34a37b7a99624ad1d6ac482256" "site/built/27-wrap-up.md" "2024-08-07" "instructors/instructor-notes.md" "e61e7587564a6c4c11dbb6beea127764" "site/built/instructor-notes.md" "2024-08-07" "learners/discuss.md" "42ad66ab1907e030914dbb2a94376a47" "site/built/discuss.md" "2024-08-07" diff --git a/renv.lock b/renv.lock new file mode 100644 index 000000000..69789bd36 --- /dev/null +++ b/renv.lock @@ -0,0 +1,1596 @@ +{ + "R": { + "Version": "4.4.1", + "Repositories": [ + { + "Name": "carpentries", + "URL": "https://carpentries.r-universe.dev" + }, + { + "Name": "carpentries_archive", + "URL": "https://carpentries.github.io/drat" + }, + { + "Name": "CRAN", + "URL": "https://cran.rstudio.com" + } + ] + }, + "Packages": { + "DBI": { + "Package": "DBI", + "Version": "1.2.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "methods" + ], + "Hash": "065ae649b05f1ff66bb0c793107508f5" + }, + "DiagrammeR": { + "Package": "DiagrammeR", + "Version": "1.0.11", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "RColorBrewer", + "cli", + "dplyr", + "glue", + "htmltools", + "htmlwidgets", + "igraph", + "magrittr", + "purrr", + "readr", + "rlang", + "rstudioapi", + "scales", + "stringr", + "tibble", + "tidyr", + "viridisLite", + "visNetwork" + ], + "Hash": "584c1e1cbb6f9b6c3b0f4ef0ad960966" + }, + "MASS": { + "Package": "MASS", + "Version": "7.3-61", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "grDevices", + "graphics", + "methods", + "stats", + "utils" + ], + "Hash": "0cafd6f0500e5deba33be22c46bf6055" + }, + "Matrix": { + "Package": "Matrix", + "Version": "1.7-0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "grDevices", + "graphics", + "grid", + "lattice", + "methods", + "stats", + "utils" + ], + "Hash": "1920b2f11133b12350024297d8a4ff4a" + }, + "R6": { + "Package": "R6", + "Version": "2.5.1", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R" + ], + "Hash": "470851b6d5d0ac559e9d01bb352b4021" + }, + "RColorBrewer": { + "Package": "RColorBrewer", + "Version": "1.1-3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "45f0398006e83a5b10b72a90663d8d8c" + }, + "askpass": { + "Package": "askpass", + "Version": "1.2.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "sys" + ], + "Hash": "cad6cf7f1d5f6e906700b9d3e718c796" + }, + "backports": { + "Package": "backports", + "Version": "1.5.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "e1e1b9d75c37401117b636b7ae50827a" + }, + "base64enc": { + "Package": "base64enc", + "Version": "0.1-3", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R" + ], + "Hash": "543776ae6848fde2f48ff3816d0628bc" + }, + "bit": { + "Package": "bit", + "Version": "4.0.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "d242abec29412ce988848d0294b208fd" + }, + "bit64": { + "Package": "bit64", + "Version": "4.0.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "bit", + "methods", + "stats", + "utils" + ], + "Hash": "9fe98599ca456d6552421db0d6772d8f" + }, + "blob": { + "Package": "blob", + "Version": "1.2.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "methods", + "rlang", + "vctrs" + ], + "Hash": "40415719b5a479b87949f3aa0aee737c" + }, + "broom": { + "Package": "broom", + "Version": "1.0.6", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "backports", + "dplyr", + "generics", + "glue", + "lifecycle", + "purrr", + "rlang", + "stringr", + "tibble", + "tidyr" + ], + "Hash": "a4652c36d1f8abfc3ddf4774f768c934" + }, + "bslib": { + "Package": "bslib", + "Version": "0.8.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "base64enc", + "cachem", + "fastmap", + "grDevices", + "htmltools", + "jquerylib", + "jsonlite", + "lifecycle", + "memoise", + "mime", + "rlang", + "sass" + ], + "Hash": "b299c6741ca9746fb227debcb0f9fb6c" + }, + "cachem": { + "Package": "cachem", + "Version": "1.1.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "fastmap", + "rlang" + ], + "Hash": "cd9a672193789068eb5a2aad65a0dedf" + }, + "callr": { + "Package": "callr", + "Version": "3.7.6", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R6", + "processx", + "utils" + ], + "Hash": "d7e13f49c19103ece9e58ad2d83a7354" + }, + "cellranger": { + "Package": "cellranger", + "Version": "1.1.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "rematch", + "tibble" + ], + "Hash": "f61dbaec772ccd2e17705c1e872e9e7c" + }, + "cli": { + "Package": "cli", + "Version": "3.6.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "utils" + ], + "Hash": "b21916dd77a27642b447374a5d30ecf3" + }, + "clipr": { + "Package": "clipr", + "Version": "0.8.0", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "utils" + ], + "Hash": "3f038e5ac7f41d4ac41ce658c85e3042" + }, + "colorspace": { + "Package": "colorspace", + "Version": "2.1-1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "grDevices", + "graphics", + "methods", + "stats" + ], + "Hash": "d954cb1c57e8d8b756165d7ba18aa55a" + }, + "conflicted": { + "Package": "conflicted", + "Version": "1.2.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "memoise", + "rlang" + ], + "Hash": "bb097fccb22d156624fd07cd2894ddb6" + }, + "cpp11": { + "Package": "cpp11", + "Version": "0.4.7", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "5a295d7d963cc5035284dcdbaf334f4e" + }, + "crayon": { + "Package": "crayon", + "Version": "1.5.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "grDevices", + "methods", + "utils" + ], + "Hash": "859d96e65ef198fd43e82b9628d593ef" + }, + "curl": { + "Package": "curl", + "Version": "5.2.1", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R" + ], + "Hash": "411ca2c03b1ce5f548345d2fc2685f7a" + }, + "data.table": { + "Package": "data.table", + "Version": "1.15.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "methods" + ], + "Hash": "8ee9ac56ef633d0c7cab8b2ca87d683e" + }, + "dbplyr": { + "Package": "dbplyr", + "Version": "2.5.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "DBI", + "R", + "R6", + "blob", + "cli", + "dplyr", + "glue", + "lifecycle", + "magrittr", + "methods", + "pillar", + "purrr", + "rlang", + "tibble", + "tidyr", + "tidyselect", + "utils", + "vctrs", + "withr" + ], + "Hash": "39b2e002522bfd258039ee4e889e0fd1" + }, + "digest": { + "Package": "digest", + "Version": "0.6.36", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "utils" + ], + "Hash": "fd6824ad91ede64151e93af67df6376b" + }, + "dplyr": { + "Package": "dplyr", + "Version": "1.1.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R6", + "cli", + "generics", + "glue", + "lifecycle", + "magrittr", + "methods", + "pillar", + "rlang", + "tibble", + "tidyselect", + "utils", + "vctrs" + ], + "Hash": "fedd9d00c2944ff00a0e2696ccf048ec" + }, + "dtplyr": { + "Package": "dtplyr", + "Version": "1.3.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "data.table", + "dplyr", + "glue", + "lifecycle", + "rlang", + "tibble", + "tidyselect", + "vctrs" + ], + "Hash": "54ed3ea01b11e81a86544faaecfef8e2" + }, + "evaluate": { + "Package": "evaluate", + "Version": "0.24.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "methods" + ], + "Hash": "a1066cbc05caee9a4bf6d90f194ff4da" + }, + "fansi": { + "Package": "fansi", + "Version": "1.0.6", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "grDevices", + "utils" + ], + "Hash": "962174cf2aeb5b9eea581522286a911f" + }, + "farver": { + "Package": "farver", + "Version": "2.1.2", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "680887028577f3fa2a81e410ed0d6e42" + }, + "fastmap": { + "Package": "fastmap", + "Version": "1.2.0", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "aa5e1cd11c2d15497494c5292d7ffcc8" + }, + "fontawesome": { + "Package": "fontawesome", + "Version": "0.5.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "htmltools", + "rlang" + ], + "Hash": "c2efdd5f0bcd1ea861c2d4e2a883a67d" + }, + "forcats": { + "Package": "forcats", + "Version": "1.0.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "glue", + "lifecycle", + "magrittr", + "rlang", + "tibble" + ], + "Hash": "1a0a9a3d5083d0d573c4214576f1e690" + }, + "fs": { + "Package": "fs", + "Version": "1.6.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "methods" + ], + "Hash": "15aeb8c27f5ea5161f9f6a641fafd93a" + }, + "gargle": { + "Package": "gargle", + "Version": "1.5.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "fs", + "glue", + "httr", + "jsonlite", + "lifecycle", + "openssl", + "rappdirs", + "rlang", + "stats", + "utils", + "withr" + ], + "Hash": "fc0b272e5847c58cd5da9b20eedbd026" + }, + "generics": { + "Package": "generics", + "Version": "0.1.3", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R", + "methods" + ], + "Hash": "15e9634c0fcd294799e9b2e929ed1b86" + }, + "ggplot2": { + "Package": "ggplot2", + "Version": "3.5.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "MASS", + "R", + "cli", + "glue", + "grDevices", + "grid", + "gtable", + "isoband", + "lifecycle", + "mgcv", + "rlang", + "scales", + "stats", + "tibble", + "vctrs", + "withr" + ], + "Hash": "44c6a2f8202d5b7e878ea274b1092426" + }, + "glue": { + "Package": "glue", + "Version": "1.7.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "methods" + ], + "Hash": "e0b3a53876554bd45879e596cdb10a52" + }, + "googledrive": { + "Package": "googledrive", + "Version": "2.1.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "gargle", + "glue", + "httr", + "jsonlite", + "lifecycle", + "magrittr", + "pillar", + "purrr", + "rlang", + "tibble", + "utils", + "uuid", + "vctrs", + "withr" + ], + "Hash": "e99641edef03e2a5e87f0a0b1fcc97f4" + }, + "googlesheets4": { + "Package": "googlesheets4", + "Version": "1.1.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cellranger", + "cli", + "curl", + "gargle", + "glue", + "googledrive", + "httr", + "ids", + "lifecycle", + "magrittr", + "methods", + "purrr", + "rematch2", + "rlang", + "tibble", + "utils", + "vctrs", + "withr" + ], + "Hash": "d6db1667059d027da730decdc214b959" + }, + "gtable": { + "Package": "gtable", + "Version": "0.3.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "glue", + "grid", + "lifecycle", + "rlang" + ], + "Hash": "e18861963cbc65a27736e02b3cd3c4a0" + }, + "haven": { + "Package": "haven", + "Version": "2.5.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "cpp11", + "forcats", + "hms", + "lifecycle", + "methods", + "readr", + "rlang", + "tibble", + "tidyselect", + "vctrs" + ], + "Hash": "9171f898db9d9c4c1b2c745adc2c1ef1" + }, + "highr": { + "Package": "highr", + "Version": "0.11", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "xfun" + ], + "Hash": "d65ba49117ca223614f71b60d85b8ab7" + }, + "hms": { + "Package": "hms", + "Version": "1.1.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "lifecycle", + "methods", + "pkgconfig", + "rlang", + "vctrs" + ], + "Hash": "b59377caa7ed00fa41808342002138f9" + }, + "htmltools": { + "Package": "htmltools", + "Version": "0.5.8.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "base64enc", + "digest", + "fastmap", + "grDevices", + "rlang", + "utils" + ], + "Hash": "81d371a9cc60640e74e4ab6ac46dcedc" + }, + "htmlwidgets": { + "Package": "htmlwidgets", + "Version": "1.6.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "grDevices", + "htmltools", + "jsonlite", + "knitr", + "rmarkdown", + "yaml" + ], + "Hash": "04291cc45198225444a397606810ac37" + }, + "httr": { + "Package": "httr", + "Version": "1.4.7", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R6", + "curl", + "jsonlite", + "mime", + "openssl" + ], + "Hash": "ac107251d9d9fd72f0ca8049988f1d7f" + }, + "ids": { + "Package": "ids", + "Version": "1.0.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "openssl", + "uuid" + ], + "Hash": "99df65cfef20e525ed38c3d2577f7190" + }, + "igraph": { + "Package": "igraph", + "Version": "2.0.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "Matrix", + "R", + "cli", + "cpp11", + "grDevices", + "graphics", + "lifecycle", + "magrittr", + "methods", + "pkgconfig", + "rlang", + "stats", + "utils", + "vctrs" + ], + "Hash": "c3b7d801d722e26e4cd888e042bf9af5" + }, + "isoband": { + "Package": "isoband", + "Version": "0.2.7", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "grid", + "utils" + ], + "Hash": "0080607b4a1a7b28979aecef976d8bc2" + }, + "jquerylib": { + "Package": "jquerylib", + "Version": "0.1.4", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "htmltools" + ], + "Hash": "5aab57a3bd297eee1c1d862735972182" + }, + "jsonlite": { + "Package": "jsonlite", + "Version": "1.8.8", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "methods" + ], + "Hash": "e1b9c55281c5adc4dd113652d9e26768" + }, + "knitr": { + "Package": "knitr", + "Version": "1.48", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "evaluate", + "highr", + "methods", + "tools", + "xfun", + "yaml" + ], + "Hash": "acf380f300c721da9fde7df115a5f86f" + }, + "labeling": { + "Package": "labeling", + "Version": "0.4.3", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "graphics", + "stats" + ], + "Hash": "b64ec208ac5bc1852b285f665d6368b3" + }, + "lattice": { + "Package": "lattice", + "Version": "0.22-6", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R", + "grDevices", + "graphics", + "grid", + "stats", + "utils" + ], + "Hash": "cc5ac1ba4c238c7ca9fa6a87ca11a7e2" + }, + "lifecycle": { + "Package": "lifecycle", + "Version": "1.0.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "glue", + "rlang" + ], + "Hash": "b8552d117e1b808b09a832f589b79035" + }, + "lubridate": { + "Package": "lubridate", + "Version": "1.9.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "generics", + "methods", + "timechange" + ], + "Hash": "680ad542fbcf801442c83a6ac5a2126c" + }, + "magrittr": { + "Package": "magrittr", + "Version": "2.0.3", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R" + ], + "Hash": "7ce2733a9826b3aeb1775d56fd305472" + }, + "memoise": { + "Package": "memoise", + "Version": "2.0.1", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "cachem", + "rlang" + ], + "Hash": "e2817ccf4a065c5d9d7f2cfbe7c1d78c" + }, + "mgcv": { + "Package": "mgcv", + "Version": "1.9-1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "Matrix", + "R", + "graphics", + "methods", + "nlme", + "splines", + "stats", + "utils" + ], + "Hash": "110ee9d83b496279960e162ac97764ce" + }, + "mime": { + "Package": "mime", + "Version": "0.12", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "tools" + ], + "Hash": "18e9c28c1d3ca1560ce30658b22ce104" + }, + "modelr": { + "Package": "modelr", + "Version": "0.1.11", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "broom", + "magrittr", + "purrr", + "rlang", + "tibble", + "tidyr", + "tidyselect", + "vctrs" + ], + "Hash": "4f50122dc256b1b6996a4703fecea821" + }, + "munsell": { + "Package": "munsell", + "Version": "0.5.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "colorspace", + "methods" + ], + "Hash": "4fd8900853b746af55b81fda99da7695" + }, + "nlme": { + "Package": "nlme", + "Version": "3.1-165", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "graphics", + "lattice", + "stats", + "utils" + ], + "Hash": "2769a88be217841b1f33ed469675c3cc" + }, + "openssl": { + "Package": "openssl", + "Version": "2.2.0", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "askpass" + ], + "Hash": "2bcca3848e4734eb3b16103bc9aa4b8e" + }, + "pillar": { + "Package": "pillar", + "Version": "1.9.0", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "cli", + "fansi", + "glue", + "lifecycle", + "rlang", + "utf8", + "utils", + "vctrs" + ], + "Hash": "15da5a8412f317beeee6175fbc76f4bb" + }, + "pkgconfig": { + "Package": "pkgconfig", + "Version": "2.0.3", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "utils" + ], + "Hash": "01f28d4278f15c76cddbea05899c5d6f" + }, + "prettyunits": { + "Package": "prettyunits", + "Version": "1.2.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "6b01fc98b1e86c4f705ce9dcfd2f57c7" + }, + "processx": { + "Package": "processx", + "Version": "3.8.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R6", + "ps", + "utils" + ], + "Hash": "0c90a7d71988856bad2a2a45dd871bb9" + }, + "progress": { + "Package": "progress", + "Version": "1.2.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R6", + "crayon", + "hms", + "prettyunits" + ], + "Hash": "f4625e061cb2865f111b47ff163a5ca6" + }, + "ps": { + "Package": "ps", + "Version": "1.7.7", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "utils" + ], + "Hash": "878b467580097e9c383acbb16adab57a" + }, + "purrr": { + "Package": "purrr", + "Version": "1.0.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "lifecycle", + "magrittr", + "rlang", + "vctrs" + ], + "Hash": "1cba04a4e9414bdefc9dcaa99649a8dc" + }, + "ragg": { + "Package": "ragg", + "Version": "1.3.2", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "systemfonts", + "textshaping" + ], + "Hash": "e3087db406e079a8a2fd87f413918ed3" + }, + "rappdirs": { + "Package": "rappdirs", + "Version": "0.3.3", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R" + ], + "Hash": "5e3c5dc0b071b21fa128676560dbe94d" + }, + "readr": { + "Package": "readr", + "Version": "2.1.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R6", + "cli", + "clipr", + "cpp11", + "crayon", + "hms", + "lifecycle", + "methods", + "rlang", + "tibble", + "tzdb", + "utils", + "vroom" + ], + "Hash": "9de96463d2117f6ac49980577939dfb3" + }, + "readxl": { + "Package": "readxl", + "Version": "1.4.3", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cellranger", + "cpp11", + "progress", + "tibble", + "utils" + ], + "Hash": "8cf9c239b96df1bbb133b74aef77ad0a" + }, + "rematch": { + "Package": "rematch", + "Version": "2.0.0", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "cbff1b666c6fa6d21202f07e2318d4f1" + }, + "rematch2": { + "Package": "rematch2", + "Version": "2.1.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "tibble" + ], + "Hash": "76c9e04c712a05848ae7a23d2f170a40" + }, + "renv": { + "Package": "renv", + "Version": "1.0.7", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "utils" + ], + "Hash": "397b7b2a265bc5a7a06852524dabae20" + }, + "reprex": { + "Package": "reprex", + "Version": "2.1.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "callr", + "cli", + "clipr", + "fs", + "glue", + "knitr", + "lifecycle", + "rlang", + "rmarkdown", + "rstudioapi", + "utils", + "withr" + ], + "Hash": "97b1d5361a24d9fb588db7afe3e5bcbf" + }, + "rlang": { + "Package": "rlang", + "Version": "1.1.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "utils" + ], + "Hash": "3eec01f8b1dee337674b2e34ab1f9bc1" + }, + "rmarkdown": { + "Package": "rmarkdown", + "Version": "2.27", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "bslib", + "evaluate", + "fontawesome", + "htmltools", + "jquerylib", + "jsonlite", + "knitr", + "methods", + "tinytex", + "tools", + "utils", + "xfun", + "yaml" + ], + "Hash": "27f9502e1cdbfa195f94e03b0f517484" + }, + "rstudioapi": { + "Package": "rstudioapi", + "Version": "0.16.0", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "96710351d642b70e8f02ddeb237c46a7" + }, + "rvest": { + "Package": "rvest", + "Version": "1.0.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "glue", + "httr", + "lifecycle", + "magrittr", + "rlang", + "selectr", + "tibble", + "xml2" + ], + "Hash": "0bcf0c6f274e90ea314b812a6d19a519" + }, + "sass": { + "Package": "sass", + "Version": "0.4.9", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R6", + "fs", + "htmltools", + "rappdirs", + "rlang" + ], + "Hash": "d53dbfddf695303ea4ad66f86e99b95d" + }, + "scales": { + "Package": "scales", + "Version": "1.3.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R6", + "RColorBrewer", + "cli", + "farver", + "glue", + "labeling", + "lifecycle", + "munsell", + "rlang", + "viridisLite" + ], + "Hash": "c19df082ba346b0ffa6f833e92de34d1" + }, + "selectr": { + "Package": "selectr", + "Version": "0.4-2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "R6", + "methods", + "stringr" + ], + "Hash": "3838071b66e0c566d55cc26bd6e27bf4" + }, + "stringi": { + "Package": "stringi", + "Version": "1.8.4", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R", + "stats", + "tools", + "utils" + ], + "Hash": "39e1144fd75428983dc3f63aa53dfa91" + }, + "stringr": { + "Package": "stringr", + "Version": "1.5.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "glue", + "lifecycle", + "magrittr", + "rlang", + "stringi", + "vctrs" + ], + "Hash": "960e2ae9e09656611e0b8214ad543207" + }, + "sys": { + "Package": "sys", + "Version": "3.4.2", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "3a1be13d68d47a8cd0bfd74739ca1555" + }, + "systemfonts": { + "Package": "systemfonts", + "Version": "1.1.0", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R", + "cpp11", + "lifecycle" + ], + "Hash": "213b6b8ed5afbf934843e6c3b090d418" + }, + "textshaping": { + "Package": "textshaping", + "Version": "0.4.0", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R", + "cpp11", + "lifecycle", + "systemfonts" + ], + "Hash": "5142f8bc78ed3d819d26461b641627ce" + }, + "tibble": { + "Package": "tibble", + "Version": "3.2.1", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R", + "fansi", + "lifecycle", + "magrittr", + "methods", + "pillar", + "pkgconfig", + "rlang", + "utils", + "vctrs" + ], + "Hash": "a84e2cc86d07289b3b6f5069df7a004c" + }, + "tidyr": { + "Package": "tidyr", + "Version": "1.3.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "cpp11", + "dplyr", + "glue", + "lifecycle", + "magrittr", + "purrr", + "rlang", + "stringr", + "tibble", + "tidyselect", + "utils", + "vctrs" + ], + "Hash": "915fb7ce036c22a6a33b5a8adb712eb1" + }, + "tidyselect": { + "Package": "tidyselect", + "Version": "1.2.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "glue", + "lifecycle", + "rlang", + "vctrs", + "withr" + ], + "Hash": "829f27b9c4919c16b593794a6344d6c0" + }, + "tidyverse": { + "Package": "tidyverse", + "Version": "2.0.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "broom", + "cli", + "conflicted", + "dbplyr", + "dplyr", + "dtplyr", + "forcats", + "ggplot2", + "googledrive", + "googlesheets4", + "haven", + "hms", + "httr", + "jsonlite", + "lubridate", + "magrittr", + "modelr", + "pillar", + "purrr", + "ragg", + "readr", + "readxl", + "reprex", + "rlang", + "rstudioapi", + "rvest", + "stringr", + "tibble", + "tidyr", + "xml2" + ], + "Hash": "c328568cd14ea89a83bd4ca7f54ae07e" + }, + "timechange": { + "Package": "timechange", + "Version": "0.3.0", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cpp11" + ], + "Hash": "c5f3c201b931cd6474d17d8700ccb1c8" + }, + "tinytex": { + "Package": "tinytex", + "Version": "0.52", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "xfun" + ], + "Hash": "cfbad971a71f0e27cec22e544a08bc3b" + }, + "tzdb": { + "Package": "tzdb", + "Version": "0.4.0", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R", + "cpp11" + ], + "Hash": "f561504ec2897f4d46f0c7657e488ae1" + }, + "utf8": { + "Package": "utf8", + "Version": "1.2.4", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "62b65c52671e6665f803ff02954446e9" + }, + "uuid": { + "Package": "uuid", + "Version": "1.2-1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "34e965e62a41fcafb1ca60e9b142085b" + }, + "vctrs": { + "Package": "vctrs", + "Version": "0.6.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "cli", + "glue", + "lifecycle", + "rlang" + ], + "Hash": "c03fa420630029418f7e6da3667aac4a" + }, + "viridisLite": { + "Package": "viridisLite", + "Version": "0.4.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R" + ], + "Hash": "c826c7c4241b6fc89ff55aaea3fa7491" + }, + "visNetwork": { + "Package": "visNetwork", + "Version": "2.1.2", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "grDevices", + "htmltools", + "htmlwidgets", + "jsonlite", + "magrittr", + "methods", + "stats", + "utils" + ], + "Hash": "3e48b097e8d9a91ecced2ed4817a678d" + }, + "vroom": { + "Package": "vroom", + "Version": "1.6.5", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "bit64", + "cli", + "cpp11", + "crayon", + "glue", + "hms", + "lifecycle", + "methods", + "progress", + "rlang", + "stats", + "tibble", + "tidyselect", + "tzdb", + "vctrs", + "withr" + ], + "Hash": "390f9315bc0025be03012054103d227c" + }, + "withr": { + "Package": "withr", + "Version": "3.0.1", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "R", + "grDevices", + "graphics" + ], + "Hash": "07909200e8bbe90426fbfeb73e1e27aa" + }, + "xfun": { + "Package": "xfun", + "Version": "0.46", + "Source": "Repository", + "Repository": "CRAN", + "Requirements": [ + "grDevices", + "stats", + "tools" + ], + "Hash": "00ce32f398db0415dde61abfef11300c" + }, + "xml2": { + "Package": "xml2", + "Version": "1.3.6", + "Source": "Repository", + "Repository": "RSPM", + "Requirements": [ + "R", + "cli", + "methods", + "rlang" + ], + "Hash": "1d0336142f4cd25d8d23cd3ba7a8fb61" + }, + "yaml": { + "Package": "yaml", + "Version": "2.3.10", + "Source": "Repository", + "Repository": "CRAN", + "Hash": "51dab85c6c98e50a18d7551e9d49f76c" + } + } +}