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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("fscoreDf<-")
export("fscoreDfNames<-")
export("fscoreDfs<-")
export("gsvaExp<-")
export("gsvaExpNames<-")
export("gsvaExps<-")
export("imgData<-")
export("mainGsvaExpName<-")
export("spatialCoords<-")
export("spatialCoordsNames<-")
export("svDf<-")
export("svDfNames<-")
export("svDfs<-")
export(LISAResult)
export(LISAsce)
export(SVPExperiment)
export(as_tbl_df)
export(cal_lisa_f1)
export(cluster.assign)
export(extract_weight_adj)
export(fast_cor)
export(fscoreDf)
export(fscoreDfNames)
export(fscoreDfs)
export(gsvaExp)
export(gsvaExpNames)
export(gsvaExps)
export(imgData)
export(mainGsvaExpName)
export(plot_heatmap_globalbv)
export(pred.cell.signature)
export(runCORR)
export(runDetectMarker)
export(runDetectSVG)
export(runENCODE)
export(runGLOBALBV)
export(runKldSVG)
export(runLISA)
export(runLOCALBV)
export(runMCA)
export(runSGSA)
export(runWKDE)
export(spatialCoords)
export(spatialCoordsNames)
export(svDf)
export(svDfNames)
export(svDfs)
exportClasses(SVPExperiment)
exportMethods("fscoreDf<-")
exportMethods("fscoreDfNames<-")
exportMethods("fscoreDfs<-")
exportMethods("gsvaExp<-")
exportMethods("gsvaExpNames<-")
exportMethods("gsvaExps<-")
exportMethods("imgData<-")
exportMethods("mainGsvaExpName<-")
exportMethods("spatialCoords<-")
exportMethods("spatialCoordsNames<-")
exportMethods("svDf<-")
exportMethods("svDfNames<-")
exportMethods("svDfs<-")
exportMethods(coerce)
exportMethods(fscoreDf)
exportMethods(fscoreDfNames)
exportMethods(fscoreDfs)
exportMethods(gsvaExp)
exportMethods(gsvaExpNames)
exportMethods(gsvaExps)
exportMethods(imgData)
exportMethods(mainGsvaExpName)
exportMethods(show)
exportMethods(spatialCoords)
exportMethods(spatialCoordsNames)
exportMethods(svDf)
exportMethods(svDfNames)
exportMethods(svDfs)
import(SummarizedExperiment)
import(methods)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(BiocGenerics,updateObject)
importFrom(BiocNeighbors,findKNN)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bplapply)
importFrom(DelayedMatrixStats,rowVars)
importFrom(Matrix,Matrix)
importFrom(Matrix,sparseMatrix)
importFrom(Rcpp,evalCpp)
importFrom(Rcpp,sourceCpp)
importFrom(RcppParallel,RcppParallelLibs)
importFrom(S4Vectors,"mcols<-")
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,List)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,coolcat)
importFrom(S4Vectors,endoapply)
importFrom(S4Vectors,isEmpty)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,"int_colData<-")
importFrom(SingleCellExperiment,"int_elementMetadata<-")
importFrom(SingleCellExperiment,"int_metadata<-")
importFrom(SingleCellExperiment,"reducedDim<-")
importFrom(SingleCellExperiment,"reducedDims<-")
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,int_colData)
importFrom(SingleCellExperiment,int_elementMetadata)
importFrom(SingleCellExperiment,int_metadata)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SingleCellExperiment,reducedDims)
importFrom(SpatialExperiment,"imgData<-")
importFrom(SpatialExperiment,"spatialCoords<-")
importFrom(SpatialExperiment,"spatialCoordsNames<-")
importFrom(SpatialExperiment,SpatialExperiment)
importFrom(SpatialExperiment,imgData)
importFrom(SpatialExperiment,spatialCoords)
importFrom(SpatialExperiment,spatialCoordsNames)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(cli,cli_abort)
importFrom(deldir,deldir)
importFrom(dplyr,case_when)
importFrom(fastmatch,"%fin%")
importFrom(ggfun,theme_blinds)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expansion)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_axis)
importFrom(ggplot2,guide_colorbar)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_size_continuous)
importFrom(ggplot2,scale_x_reverse)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,unit)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggstar,geom_star)
importFrom(ggstar,scale_starshape_manual)
importFrom(ggtree,ggtree)
importFrom(ggtree,layout_dendrogram)
importFrom(ggtree,td_filter)
importFrom(methods,as)
importFrom(methods,callNextMethod)
importFrom(methods,initialize)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(methods,setClassUnion)
importFrom(methods,show)
importFrom(pracma,tic)
importFrom(pracma,toc)
importFrom(rlang,.data)
importFrom(rlang,sym)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats,pnorm)
importFrom(stats,pt)
importFrom(stats,setNames)
importFrom(utils,combn)
importFrom(withr,with_seed)
useDynLib(SVP)