diff --git a/.github/workflows/build.yaml b/.github/workflows/build.yaml index 3328305c..077ebf27 100644 --- a/.github/workflows/build.yaml +++ b/.github/workflows/build.yaml @@ -73,4 +73,4 @@ jobs: - name: Run unit tests and generate coverage report run: pytest . - name: Test notebook execution - run: pytest --nbval-lax notebooks/ --current-env --ignore-glob="notebooks/dataloader_tutorial.ipynb" --ignore-glob="notebooks/datasets_and_dataloaders.ipynb" --ignore-glob="notebooks/foldcomp.ipynb" --ignore-glob="notebooks/grn_tutorial.ipynb" + run: pytest --nbval-lax notebooks/ --nbval-current-env --ignore-glob="notebooks/dataloader_tutorial.ipynb" --ignore-glob="notebooks/datasets_and_dataloaders.ipynb" --ignore-glob="notebooks/foldcomp.ipynb" --ignore-glob="notebooks/grn_tutorial.ipynb" diff --git a/.github/workflows/code-tests-docker.yaml b/.github/workflows/code-tests-docker.yaml index d9fc8c49..da45e3d6 100644 --- a/.github/workflows/code-tests-docker.yaml +++ b/.github/workflows/code-tests-docker.yaml @@ -57,7 +57,7 @@ jobs: - name: Run example notebooks (Docker) run: | - docker exec $(docker ps -q) bash -c 'grep -l smoke_test notebooks/*.ipynb | pytest --nbval-lax --current-env' + docker exec $(docker ps -q) bash -c 'grep -l smoke_test notebooks/*.ipynb | pytest --nbval-lax --nbval-current-env' - name: Upload code coverage run: | diff --git a/.github/workflows/minimal__install.yaml b/.github/workflows/minimal__install.yaml index f18aca59..fee457ca 100644 --- a/.github/workflows/minimal__install.yaml +++ b/.github/workflows/minimal__install.yaml @@ -50,4 +50,4 @@ jobs: - name: Run unit tests and generate coverage report run: pytest . --ignore-glob="tests/protein/tensor" --ignore="tests/ml/test_conversion.py" --ignore="tests/ml/test_torch_geometric_dataset.py" - name: Test notebook execution - run: pytest --nbval-lax notebooks/ --current-env --ignore-glob="notebooks/dataloader_tutorial.ipynb" --ignore-glob="notebooks/higher_order_graphs.ipynb" --ignore-glob="notebooks/protein_graph_analytics.ipynb" --ignore-glob="notebooks/subgraphing_tutorial.ipynb" --ignore-glob="notebooks/splitting_a_dataset.ipynb" --ignore-glob="notebooks/protein_tensors.ipynb" --ignore-glob="notebooks/datasets_and_dataloaders.ipynb" --ignore-glob="notebooks/foldcomp.ipynb" --ignore-glob="notebooks/creating_datasets_from_the_pdb.ipynb" --ignore-glob="notebooks/grn_tutorial.ipynb" + run: pytest --nbval-lax notebooks/ --nbval-current-env --ignore-glob="notebooks/dataloader_tutorial.ipynb" --ignore-glob="notebooks/higher_order_graphs.ipynb" --ignore-glob="notebooks/protein_graph_analytics.ipynb" --ignore-glob="notebooks/subgraphing_tutorial.ipynb" --ignore-glob="notebooks/splitting_a_dataset.ipynb" --ignore-glob="notebooks/protein_tensors.ipynb" --ignore-glob="notebooks/datasets_and_dataloaders.ipynb" --ignore-glob="notebooks/foldcomp.ipynb" --ignore-glob="notebooks/creating_datasets_from_the_pdb.ipynb" --ignore-glob="notebooks/grn_tutorial.ipynb"