diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 55f8fbe..42dd85e 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -14,10 +14,9 @@ repos:
             exclude: miscellaneous/structures/SiO2.xyz
 
     - repo: https://github.com/astral-sh/ruff-pre-commit
-      rev: v0.6.9
+      rev: v0.8.0
       hooks:
           - id: ruff-format
-            exclude: ^docs/.*
           - id: ruff
             args: [--fix, --exit-non-zero-on-fix, --show-fixes]
 
@@ -27,11 +26,11 @@ repos:
           - id: yamlfmt
 
     - repo: https://github.com/sirosen/check-jsonschema
-      rev: 0.29.3
+      rev: 0.29.4
       hooks:
           - id: check-github-workflows
 
     - repo: https://github.com/kynan/nbstripout
-      rev: 0.7.1
+      rev: 0.8.1
       hooks:
           - id: nbstripout
diff --git a/home/app_manager.py b/home/app_manager.py
index c1c6e1b..fa9fc3c 100644
--- a/home/app_manager.py
+++ b/home/app_manager.py
@@ -4,11 +4,11 @@
 
 import ipywidgets as ipw
 import traitlets
-from aiidalab.app import AppRemoteUpdateStatus as AppStatus
-from aiidalab.app import AppVersion
 from jinja2 import Template
 from packaging.version import InvalidVersion, parse
 
+from aiidalab.app import AppRemoteUpdateStatus as AppStatus
+from aiidalab.app import AppVersion
 from home.utils import load_logo
 from home.widgets import LogOutputWidget, Spinner, StatusHTML
 
diff --git a/home/app_store.py b/home/app_store.py
index e040229..4e64f83 100644
--- a/home/app_store.py
+++ b/home/app_store.py
@@ -3,11 +3,11 @@
 import logging
 
 import ipywidgets as ipw
-from aiidalab.app import AiidaLabApp
-from aiidalab.utils import load_app_registry_index
 from IPython.display import display
 from jinja2 import Template
 
+from aiidalab.app import AiidaLabApp
+from aiidalab.utils import load_app_registry_index
 from home.app_manager import AppManagerWidget
 
 logger = logging.getLogger(__name__)
diff --git a/home/start_page.py b/home/start_page.py
index f67d126..6e31791 100644
--- a/home/start_page.py
+++ b/home/start_page.py
@@ -7,10 +7,10 @@
 
 import ipywidgets as ipw
 import traitlets
-from aiidalab.app import AiidaLabApp
-from aiidalab.config import AIIDALAB_APPS
 from IPython.display import display
 
+from aiidalab.app import AiidaLabApp
+from aiidalab.config import AIIDALAB_APPS
 from home.utils import load_widget
 from home.widgets import AppStatusInfoWidget
 
diff --git a/home/utils.py b/home/utils.py
index c365b1f..bb1f534 100644
--- a/home/utils.py
+++ b/home/utils.py
@@ -5,9 +5,10 @@
 from os import path
 
 import ipywidgets as ipw
-from aiidalab.config import AIIDALAB_APPS
 from markdown import markdown
 
+from aiidalab.config import AIIDALAB_APPS
+
 
 def load_widget(name):
     if path.exists(path.join(AIIDALAB_APPS, name, "start.py")):
diff --git a/home/widgets.py b/home/widgets.py
index 31fef04..6b10a74 100644
--- a/home/widgets.py
+++ b/home/widgets.py
@@ -4,6 +4,7 @@
 
 import ipywidgets as ipw
 import traitlets
+
 from aiidalab.app import AppRemoteUpdateStatus as AppStatus
 from aiidalab.config import AIIDALAB_REGISTRY
 
diff --git a/single_app.ipynb b/single_app.ipynb
index 5657c6b..28ebb3f 100644
--- a/single_app.ipynb
+++ b/single_app.ipynb
@@ -24,10 +24,10 @@
     "import urllib.parse as urlparse\n",
     "\n",
     "import ipywidgets as ipw\n",
+    "\n",
     "from aiidalab.app import AiidaLabApp\n",
     "from aiidalab.config import AIIDALAB_APPS\n",
     "from aiidalab.utils import load_app_registry_entry\n",
-    "\n",
     "from home.app_manager import AppManagerWidget"
    ]
   },
diff --git a/tests_notebooks/conftest.py b/tests_notebooks/conftest.py
index 379aa02..b85c555 100644
--- a/tests_notebooks/conftest.py
+++ b/tests_notebooks/conftest.py
@@ -6,7 +6,7 @@
 import pytest
 import requests
 import selenium.webdriver.support.expected_conditions as ec
-from requests.exceptions import ConnectionError
+from requests.exceptions import ConnectionError  # noqa: A004
 from selenium.webdriver.common.by import By
 from selenium.webdriver.support.wait import WebDriverWait