Missing system dependency

[rlorigro]

Hi,

Thanks for the new additions to the graph alignment ecosystem. I have attempted to use your ReadMe to compile SRFAligner, but i get the following result:

make[1]: Entering directory '/home/user/software/SRFAligner/tools/ChainX-block-graph'
gengetopt \
	--input=./command-line-parsing/config.ggo \
	--output-dir=./command-line-parsing/ \
	--unnamed-opts
make[1]: gengetopt: No such file or directory
make[1]: *** [Makefile:13: command-line-parsing/cmdline.c] Error 127
make[1]: Leaving directory '/home/user/software/SRFAligner/tools/ChainX-block-graph'
make: *** [Makefile:4: prerequisites] Error 2

So it seems gengetopt is a missing system dependency on my machine, which is running Ubuntu 22.04. Installing it has fixed the error.

[nrizzo]

Hi, thanks for spotting this! gengetopt is needed only for development so I just removed the dependency. This should be fixed by commit d925774.