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mkdocs.yml
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mkdocs.yml
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site_name: EDS-NLP
repo_url: https://github.com/aphp/edsnlp
repo_name: aphp/edsnlp
# copyright: Copyright © 2022 – Assistance Publique - Hôpitaux de Paris
# extra:
# social:
# - icon: fontawesome/brands/github
# link: https://github.com/aphp
theme:
language: en
name: material
custom_dir: docs/assets/overrides
palette:
- scheme: default
toggle:
icon: material/brightness-4
name: Switch to dark mode
- scheme: slate
toggle:
icon: material/brightness-7
name: Switch to light mode
# logo: assets/logo/edsnlp.svg
favicon: assets/logo/edsnlp.svg
features:
- navigation.tracking
- navigation.instant
- navigation.indexes
- navigation.prune
- navigation.top
- navigation.footer
- content.code.annotate
- content.code.copy
- announce.dismiss
nav:
- index.md
- Demo: https://aphp.github.io/edsnlp/demo" target="_blank
- Tutorials:
- Overview: tutorials/index.md
- tutorials/spacy101.md
- tutorials/matching-a-terminology.md
- tutorials/qualifying-entities.md
- tutorials/visualization.md
- tutorials/detecting-dates.md
- tutorials/reason.md
- tutorials/endlines.md
- tutorials/aggregating-results.md
- tutorials/multiple-texts.md
- advanced-tutorials/fastapi.md
- tutorials/make-a-training-script.md
- tutorials/training.md
- Pipes:
- Overview: pipes/index.md
- Core Pipelines:
- pipes/core/index.md
- pipes/core/normalizer.md
- pipes/core/sentences.md
- pipes/core/matcher.md
- pipes/core/terminology.md
- pipes/core/contextual-matcher.md
- pipes/core/endlines.md
- Qualifiers:
- pipes/qualifiers/index.md
- pipes/qualifiers/negation.md
- pipes/qualifiers/family.md
- pipes/qualifiers/hypothesis.md
- pipes/qualifiers/reported-speech.md
- pipes/qualifiers/history.md
- Miscellaneous:
- pipes/misc/index.md
- pipes/misc/dates.md
- pipes/misc/quantities.md
- pipes/misc/consultation-dates.md
- pipes/misc/sections.md
- pipes/misc/reason.md
- pipes/misc/tables.md
- pipes/misc/split.md
- Named Entity Recognition:
- Overview: pipes/ner/index.md
- Scores:
- pipes/ner/scores/index.md
- pipes/ner/scores/charlson.md
- pipes/ner/scores/emergency-ccmu.md
- pipes/ner/scores/emergency-gemsa.md
- pipes/ner/scores/emergency-priority.md
- pipes/ner/scores/sofa.md
- pipes/ner/scores/elston-ellis.md
- Disorders:
- pipes/ner/disorders/index.md
- pipes/ner/disorders/aids.md
- pipes/ner/disorders/ckd.md
- pipes/ner/disorders/copd.md
- pipes/ner/disorders/cerebrovascular-accident.md
- pipes/ner/disorders/congestive-heart-failure.md
- pipes/ner/disorders/connective-tissue-disease.md
- pipes/ner/disorders/dementia.md
- pipes/ner/disorders/diabetes.md
- pipes/ner/disorders/hemiplegia.md
- pipes/ner/disorders/leukemia.md
- pipes/ner/disorders/liver-disease.md
- pipes/ner/disorders/lymphoma.md
- pipes/ner/disorders/myocardial-infarction.md
- pipes/ner/disorders/peptic-ulcer-disease.md
- pipes/ner/disorders/peripheral-vascular-disease.md
- pipes/ner/disorders/solid-tumor.md
- pipes/ner/covid.md
- Behaviors:
- pipes/ner/behaviors/index.md
- pipes/ner/behaviors/alcohol.md
- pipes/ner/behaviors/tobacco.md
- pipes/ner/adicap.md
- pipes/ner/tnm.md
- pipes/ner/umls.md
- pipes/ner/cim10.md
- pipes/ner/drugs.md
- pipes/ner/suicide_attempt.md
- Trainable components:
- pipes/trainable/index.md
- 'Transformer': pipes/trainable/embeddings/transformer.md
- 'Text CNN': pipes/trainable/embeddings/text_cnn.md
- 'Span Pooler': pipes/trainable/embeddings/span_pooler.md
- 'NER': pipes/trainable/ner.md
- 'Span Classifier': pipes/trainable/span-classifier.md
- 'Span Linker': pipes/trainable/span-linker.md
- 'Biaffine Dependency Parser': pipes/trainable/biaffine-dependency-parser.md
- 'Extractive QA': pipes/trainable/extractive-qa.md
- tokenizers.md
- Data Connectors:
- data/index.md
- data/standoff.md
- data/conll.md
- data/json.md
- data/parquet.md
- data/pandas.md
- data/polars.md
- data/spark.md
- data/converters.md
- Concepts:
- concepts/pipeline.md
- concepts/torch-component.md
- concepts/inference.md
- Utilities:
- utilities/index.md
- utilities/tests/blocs.md
- utilities/tests/examples.md
- utilities/matchers.md
- Code Reference: reference/
- contributing.md
- changelog.md
extra:
version:
provider: mike
default: latest
# Just uncomment the following lines to enable i18n
# alternate:
# - name: English
# link: /en/
# lang: en
# - name: Français
# link: /fr/
# lang: fr
extra_css:
- assets/stylesheets/extra.css
- assets/stylesheets/cards.css
- assets/termynal/termynal.css
extra_javascript:
- https://cdn.jsdelivr.net/npm/vega@5
- https://cdn.jsdelivr.net/npm/vega-lite@5
- https://cdn.jsdelivr.net/npm/vega-embed@6
- assets/termynal/termynal.js
watch:
- contributing.md
- changelog.md
- edsnlp
hooks:
- docs/scripts/plugin.py
plugins:
- redirects:
redirect_maps:
'pipes/trainable/span-qualifier.md': 'pipes/trainable/span-classifier.md'
- search
- minify:
minify_html: true
minify_js: true
minify_css: true
htmlmin_opts:
remove_comments: true
cache_safe: true
- autorefs:
priority:
- .*
- reference
- mkdocstrings:
enable_inventory: true
custom_templates: docs/assets/templates
handlers:
python:
options:
extensions:
- docs/scripts/griffe_ext.py:EDSNLPDocstrings
docstring_style: numpy
docstring_section_style: spacy
heading_level: 2
members_order: source
show_root_toc_entry: false
show_signature: false
merge_init_into_class: true
- bibtex:
bibtex_file: "docs/references.bib"
- clickable_snippets:
# Just uncomment the following lines to enable i18n
# and start creating .fr.md and .en.md files.
# - i18n:
# default_language: en
# docs_structure: suffix
# languages:
# en:
# name: English
# build: true
- mike
markdown_extensions:
- pymdownx.highlight
- admonition
- pymdownx.superfences
- pymdownx.inlinehilite
- pymdownx.snippets
- pymdownx.tabbed:
alternate_style: true
slugify: !!python/object/apply:pymdownx.slugs.slugify
kwds:
case: lower
- footnotes
- md_in_html
- attr_list
- pymdownx.details
- pymdownx.tasklist:
custom_checkbox: true
- pymdownx.emoji:
emoji_index: !!python/name:materialx.emoji.twemoji
emoji_generator: !!python/name:materialx.emoji.to_svg
- docs.scripts.cards
validation:
absolute_links: ignore
unrecognized_links: ignore