Installation not working with python 3.13

[aricohen93]

Description

Installation not working with python 3.13

How to reproduce the bug

(.venv_edsnlp) acohen:~/CodeUbuntu/edsnlp$ pip install -e '.[dev,setup,ml]'
Obtaining file:///home/acohen/CodeUbuntu/edsnlp
  Installing build dependencies ... error
  error: subprocess-exited-with-error

  × pip subprocess to install build dependencies did not run successfully.
  │ exit code: 1
  ╰─> [151 lines of output]
      Ignoring numpy: markers 'python_version == "3.7" and platform_machine not in "arm64|aarch64|loongarch64" and platform_system != "AIX" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.7" and platform_machine == "arm64" and platform_system == "Windows" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.7" and platform_system == "AIX" and platform_machine != "loongarch64" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.8" and platform_machine not in "arm64|aarch64|s390x|loongarch64" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.8" and platform_machine == "arm64" and platform_system == "Windows" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.8" and platform_machine == "s390x" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.6" and platform_machine != "loongarch64" and platform_python_implementation == "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.7" and platform_machine == "aarch64" and platform_system != "AIX" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.8" and platform_machine == "aarch64" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.9" and platform_machine == "arm64" and platform_system == "Windows" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.9" and platform_system not in "OS400" and platform_machine not in "arm64|loongarch64" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.7" and platform_machine != "loongarch64" and platform_python_implementation == "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.7" and platform_machine == "arm64" and platform_system == "Darwin" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.8" and platform_machine == "arm64" and platform_system == "Darwin" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.9" and platform_machine == "arm64" and platform_system == "Darwin" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.10" and platform_machine != "loongarch64"' don't match your environment
      Ignoring numpy: markers 'platform_machine == "loongarch64" and python_version >= "3.8" and python_version < "3.11" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.8" and platform_machine != "loongarch64" and platform_python_implementation == "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.11"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.9" and platform_system == "OS400" and platform_machine != "loongarch64" and platform_python_implementation != "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.9" and platform_python_implementation == "PyPy"' don't match your environment
      Ignoring numpy: markers 'python_version == "3.12"' don't match your environment
      Collecting setuptools
        Using cached setuptools-75.6.0-py3-none-any.whl.metadata (6.7 kB)
      Collecting cython>=0.25
        Using cached Cython-3.0.11-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.2 kB)
      Collecting spacy<3.8,>=3.2
        Using cached spacy-3.7.5.tar.gz (1.3 MB)
        Installing build dependencies: started
        Installing build dependencies: finished with status 'error'
        error: subprocess-exited-with-error

        × pip subprocess to install build dependencies did not run successfully.
        │ exit code: 1
        ╰─> [106 lines of output]
            Ignoring numpy: markers 'python_version < "3.9"' don't match your environment
            Collecting setuptools
              Using cached setuptools-75.6.0-py3-none-any.whl.metadata (6.7 kB)
            Collecting cython<3.0,>=0.25
              Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB)
            Collecting cymem<2.1.0,>=2.0.2
              Using cached cymem-2.0.10-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
            Collecting preshed<3.1.0,>=3.0.2
              Using cached preshed-3.0.9.tar.gz (14 kB)
              Installing build dependencies: started
              Installing build dependencies: finished with status 'done'
              Getting requirements to build wheel: started
              Getting requirements to build wheel: finished with status 'done'
              Preparing metadata (pyproject.toml): started
              Preparing metadata (pyproject.toml): finished with status 'done'
            Collecting murmurhash<1.1.0,>=0.28.0
              Using cached murmurhash-1.0.11-cp313-cp313-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
            Collecting thinc<8.3.0,>=8.2.2
              Using cached thinc-8.2.5.tar.gz (193 kB)
              Installing build dependencies: started
              Installing build dependencies: finished with status 'error'
              error: subprocess-exited-with-error

              × pip subprocess to install build dependencies did not run successfully.
              │ exit code: 1
              ╰─> [70 lines of output]
                  Ignoring numpy: markers 'python_version < "3.9"' don't match your environment
                  Collecting setuptools
                    Using cached setuptools-75.6.0-py3-none-any.whl.metadata (6.7 kB)
                  Collecting cython<3.0,>=0.25
                    Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB)
                  Collecting murmurhash<1.1.0,>=1.0.2
                    Using cached murmurhash-1.0.11-cp313-cp313-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
                  Collecting cymem<2.1.0,>=2.0.2
                    Using cached cymem-2.0.10-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
                  Collecting preshed<3.1.0,>=3.0.2
                    Using cached preshed-3.0.9.tar.gz (14 kB)
                    Installing build dependencies: started
                    Installing build dependencies: finished with status 'done'
                    Getting requirements to build wheel: started
                    Getting requirements to build wheel: finished with status 'done'
                    Preparing metadata (pyproject.toml): started
                    Preparing metadata (pyproject.toml): finished with status 'done'
                  Collecting blis<0.8.0,>=0.7.8
                    Using cached blis-0.7.11.tar.gz (2.9 MB)
                    Installing build dependencies: started
                    Installing build dependencies: finished with status 'done'
                    Getting requirements to build wheel: started
                    Getting requirements to build wheel: finished with status 'done'
                    Preparing metadata (pyproject.toml): started
                    Preparing metadata (pyproject.toml): finished with status 'done'
                  Collecting numpy<2.0.0,>=1.25.0
                    Using cached numpy-1.26.4.tar.gz (15.8 MB)
                    Installing build dependencies: started
                    Installing build dependencies: finished with status 'done'
                    Getting requirements to build wheel: started
                    Getting requirements to build wheel: finished with status 'done'
                    Installing backend dependencies: started
                    Installing backend dependencies: finished with status 'done'
                    Preparing metadata (pyproject.toml): started
                    Preparing metadata (pyproject.toml): finished with status 'error'
                    error: subprocess-exited-with-error

                    × Preparing metadata (pyproject.toml) did not run successfully.
                    │ exit code: 1
                    ╰─> [20 lines of output]
                        + /home/acohen/envs/.venv_edsnlp/bin/python /tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074/vendored-meson/meson/meson.py setup /tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074 /tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074/.mesonpy-thoe510l -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074/.mesonpy-thoe510l/meson-python-native-file.ini
                        The Meson build system
                        Version: 1.2.99
                        Source dir: /tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074
                        Build dir: /tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074/.mesonpy-thoe510l
                        Build type: native build
                        Project name: NumPy
                        Project version: 1.26.4

                        ../meson.build:1:0: ERROR: Unknown compiler(s): [['cc'], ['gcc'], ['clang'], ['nvc'], ['pgcc'], ['icc'], ['icx']]
                        The following exception(s) were encountered:
                        Running `cc --version` gave "[Errno 2] No such file or directory: 'cc'"
                        Running `gcc --version` gave "[Errno 2] No such file or directory: 'gcc'"
                        Running `clang --version` gave "[Errno 2] No such file or directory: 'clang'"
                        Running `nvc --version` gave "[Errno 2] No such file or directory: 'nvc'"
                        Running `pgcc --version` gave "[Errno 2] No such file or directory: 'pgcc'"
                        Running `icc --version` gave "[Errno 2] No such file or directory: 'icc'"
                        Running `icx --version` gave "[Errno 2] No such file or directory: 'icx'"

                        A full log can be found at /tmp/pip-install-adw35c2d/numpy_d69586e706074cada279f45407102074/.mesonpy-thoe510l/meson-logs/meson-log.txt
                        [end of output]

                    note: This error originates from a subprocess, and is likely not a problem with pip.
                  error: metadata-generation-failed

                  × Encountered error while generating package metadata.
                  ╰─> See above for output.

                  note: This is an issue with the package mentioned above, not pip.
                  hint: See above for details.
                  [end of output]

              note: This error originates from a subprocess, and is likely not a problem with pip.
            error: subprocess-exited-with-error

            × pip subprocess to install build dependencies did not run successfully.
            │ exit code: 1
            ╰─> See above for output.

            note: This error originates from a subprocess, and is likely not a problem with pip.
            [end of output]

        note: This error originates from a subprocess, and is likely not a problem with pip.
      error: subprocess-exited-with-error

      × pip subprocess to install build dependencies did not run successfully.
      │ exit code: 1
      ╰─> See above for output.

      note: This error originates from a subprocess, and is likely not a problem with pip.
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

Your Environment

• Operating System:
  Distributor ID: Ubuntu
  Description: Ubuntu 24.04.1 LTS
  Release: 24.04
  Codename: noble

[aricohen93]

Wiht python 3.9, the following dependencies should be installed before (it is not specified in the doc) :

sudo apt-get install gcc
sudo apt-get install g++

[aricohen93]

but i dont arrive to install edsnlp with py3.13