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Memory mapping and clarification of sequencing depth reccomendations #43

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joshuakirsch opened this issue Mar 27, 2024 · 1 comment

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joshuakirsch commented Mar 27, 2024

Hi folks,

Thanks for this great tool! Two things that I think would improve the tool/documentation:

Adding in kraken2 memory-mapping support. This would greatly speed up the tool.
Specifying whether the sequencing depth is in read pairs or total reads. In other words, are 50M PE reads (100M reads total) at the 50M level or the 100M level?

Thanks!

yipinto added the enhancement label

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yipinto commented Mar 29, 2024

Thank you!
We will add memory-mapping support.
The sequencing depth is in read pairs, so 10M reads means 10M pairs.
Thanks for using Phanta!

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