You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hello, I'm trying to go through the tutorial/example in the docs and I'm using a D. melanogaster genome instead of the E. coli one (it's what I have on hand). I cannot seem to get Pseudoseq to load the fasta file into Molecules() unless I remove N characters, which in my case I replaced them with A.
The genome is a pretty normal genome and the only funky in it is 7 N nucleotides. It's pretty normal to have N's in an assembly (although I expect they are less useful in simulation context). Is the intolerance of N nucleotides specific to Pseudoseq or FASTX/BioSequences?
The text was updated successfully, but these errors were encountered:
pdimens
changed the title
Cannot encode fasta to BioSequences.DNAAlphabet
Cannot encode fasta to BioSequences.DNAAlphabet when N present
Nov 1, 2023
Hello, I'm trying to go through the tutorial/example in the docs and I'm using a D. melanogaster genome instead of the E. coli one (it's what I have on hand). I cannot seem to get
Pseudoseq
to load the fasta file intoMolecules()
unless I remove N characters, which in my case I replaced them with A.The genome is a pretty normal genome and the only funky in it is 7
N
nucleotides. It's pretty normal to have N's in an assembly (although I expect they are less useful in simulation context). Is the intolerance of N nucleotides specific to Pseudoseq or FASTX/BioSequences?The text was updated successfully, but these errors were encountered: