DESCRIPTION

Package: Prots4Prots
Title: Protocols for Proteomics
Version: 0.0.2
Author: Celine Hernandez <celine.hernandez@isb-sib.ch>
Description: A package comparing different statistical tools in order to find
    differentially expressed proteins. The R folder contains the toolbox, tools
    brought together by topic. The inst folder contains use cases of the
    toolbox.
Maintainer: Celine Hernandez <Celine.Hernandez@isb-sib.ch>
License: GPL (>= 2)
Imports:
    BiocGenerics,
    Biobase,
    knitr,
    markdown,
    ggplot2,
    lattice,
    latticeExtra,
    plyr,
    vsn,
    LPE,
    limma,
    samr
Depends:
    R (>= 2.15)
Suggests:
    RUnit
Packaged: 
Collate:
    'Prots4Prots-package.R'
    'mtc_all_multiple_testing_correctionl.R'
    'mtc_benjamini-hochberg.R'
    'mtc_report_tools.R'
    'nrm_all_normalization.R'
    'nrm_inter-quartile-range.R'
    'nrm_logarithm2.R'
    'nrm_report_tools.R'
    'nrm_variance-stabilizing.R'
    'qck_raw_data.R'
    'qck_report_tools.R'
    'rep_knitr.R'
    'stt_all_significance.R'
    'stt_limma.R'
    'stt_local-pooled-error.R'
    'stt_report_tools.R'
    'stt_samr.R'
    'stt_t-test.R'
    'sum_all_summary_methods.R'
    'sum_summary_methods.R'