From 53f3e4a20e148b245bd570e4beffafcba40e81e0 Mon Sep 17 00:00:00 2001
From: nfancy <50167573+nfancy@users.noreply.github.com>
Date: Tue, 19 Nov 2024 21:20:49 +0000
Subject: [PATCH] Delete conf/imperial.config

---
 conf/imperial.config | 108 -------------------------------------------
 1 file changed, 108 deletions(-)
 delete mode 100644 conf/imperial.config

diff --git a/conf/imperial.config b/conf/imperial.config
deleted file mode 100644
index 5ef34e0..0000000
--- a/conf/imperial.config
+++ /dev/null
@@ -1,108 +0,0 @@
-//Profile config names for nf-core/configs
-
-params {
-    // Config Params
-    config_profile_description = 'Imperial College London - HPC Profile -- provided by nf-core/configs.'
-    config_profile_contact     = 'Nurun Fancy (@nfancy)'
-    config_profile_url         = 'https://www.imperial.ac.uk/admin-services/ict/self-service/research-support/rcs/'
-
-    // Resources
-    max_memory                 = 920.GB
-    max_cpus                   = 256
-    max_time                   = 1000.h
-}
-
-process {
-    resourceLimits = [
-        memory: 920.GB,
-        cpus: 256,
-        time: 1000.h
-    ]
-}
-
-profiles {
-    imperial {
-        process {
-            executor      = 'pbspro'
-
-            // Update amount of max retries and set "retry" as the error strategy for all error codes
-            errorStrategy = 'retry'
-            maxRetries    = 1
-            maxErrors     = '-1'
-
-
-            // General resource requirements
-            cpus          = { 1 * task.attempt }
-            memory        = { 6.GB * task.attempt }
-            time          = { 4.h * task.attempt }
-
-            // Process-specific resource requirements
-            withLabel: process_single {
-                cpus   = 1
-                memory = { 6.GB * task.attempt }
-                time   = { 4.h * task.attempt }
-            }
-
-            withLabel: process_low {
-                cpus   = { 2 * task.attempt }
-                memory = { 48.GB * task.attempt }
-                time   = { 8.h * task.attempt }
-            }
-
-            withLabel: process_medium {
-                cpus   = { 8 * task.attempt }
-                memory = { 64.GB * task.attempt }
-                time   = { 12.h * task.attempt }
-            }
-
-            withLabel: process_high {
-                cpus   = { 8 * task.attempt }
-                memory = { 100.GB * task.attempt }
-                time   = { 16.h * task.attempt }
-            }
-
-            withLabel: process_long {
-                cpus   = 9
-                memory = 100.GB
-                time   = { 24.h * task.attempt }
-            }
-
-            withLabel: process_high_memory {
-                cpus   = { 8 * task.attempt }
-                memory = { 200.GB * task.attempt }
-                time   = { 8.h * task.attempt }
-            }
-            withLabel: with_gpus {
-                time             = 24.h
-                clusterOptions   = '-l select=1:ncpus=4:mem=24gb:ngpus=1:gpu_type=RTX6000'
-                maxForks         = 1
-                containerOptions = {
-                    workflow.containerEngine == "singularity"
-                        ? '--nv --env CUDA_VISIBLE_DEVICES=$CUDA_VISIBLE_DEVICES'
-                        : (workflow.containerEngine == "docker" ? '--gpus all' : null)
-                }
-                beforeScript     = 'module load tools/prod'
-            }
-        }
-    }
-}
-
-executor {
-    '$pbspro' {
-        queueSize       = 49
-        submitRateLimit = '10 sec'
-        maxForks        = 45
-    }
-
-    '$local' {
-        cpus      = 2
-        queueSize = 1
-        memory    = '6 GB'
-    }
-}
-
-singularity {
-    enabled    = true
-    autoMounts = true
-    runOptions = "-B /rds/,/rds/general/user/${USER}/ephemeral/tmp/:/tmp,/rds/general/user/${USER}/ephemeral/tmp/:/var/tmp"
-}