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What's coming out of the ontology files? #1

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croeder opened this issue Aug 21, 2014 · 1 comment
Open

What's coming out of the ontology files? #1

croeder opened this issue Aug 21, 2014 · 1 comment
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@croeder
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croeder commented Aug 21, 2014

[("organism")] nil nil
[("organism") ("organism")]
[("organism")] nil [
("organism")]
[("GO:0007568")] nil
[("CHEBI:27594") ("PR:000009758" "Entrez Gene sequ|mber 1, :part-of-speech "JJ", :text "Little", :start 102, :end 108, :dependency {:sentence-num 4, :token-num 1, :literal "Little", :normalized "little", :pos
ence") ("independent_continuant")]
[("organism") ("PR:000016877" "Entrez Gene sequence") ("CHEBI:26130")] nil
[("organism")]
[("GO:0065007")] [("organism") (|"JJ", :dep-id 2, :dep-type "SBJ"}, :anno-list nil} #clojure_craft.craft_pos.Token{:token-number 2, :part-of-speech "VBZ", :text "is", :start 109, :end 111, :d
"organism") ("species")]

@croeder croeder added this to the Debug Annotation values milestone Aug 21, 2014
@croeder croeder self-assigned this Aug 21, 2014
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croeder commented Aug 21, 2014

Taxon needs for the code to look at the slots. We need to get the slot named "Taxonomy ID" and get its value:

organism















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