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issue when executing wrapper.sh #17

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amathsow opened this issue Jul 4, 2024 · 1 comment
Open

issue when executing wrapper.sh #17

amathsow opened this issue Jul 4, 2024 · 1 comment

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@amathsow
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amathsow commented Jul 4, 2024

Hello,
i'm trying to install mrs_singulratiy, everything work smooth without error until step 3 when i need to copy example_wrapper to wrapper. I did but when executing the wrapper.sh i have error bellow

./wrapper.sh
realpath: /home/amath/Documents/MRS_simulator/mount: No such file or directory
./wrapper.sh: "SOURCE[$i/3]=$( realpath -e "${MOUNTS[$i]}" )" command failed with exit code 1

@klaxalk
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klaxalk commented Jul 9, 2024

Hey, when copying the example_wrapper.sh outside of the mrs_singularity folder, the MRS_SINGULARITY_PATH variable within the script needs to be pointed to the correct location of the repository. I updated the step 3 to contain this info.

Moreover, you should know that the "MRS Singularity" today become "MRS Apptainer" (Apptainer is Singularity renamed and moved under the OSS foundation). When updating the repo, you will need to repeat the installation step and probably rebuild the image.

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