From 4d404ea9efa9f77c56d769be56b7f2796e26d820 Mon Sep 17 00:00:00 2001 From: "John T. Wodder II" Date: Tue, 14 Nov 2023 12:51:38 -0500 Subject: [PATCH 1/2] Update for Pydantic v2 --- poetry.lock | 237 +++++++++++++++++++++++--------------- pyproject.toml | 2 +- zarr_checksum/checksum.py | 5 +- 3 files changed, 148 insertions(+), 96 deletions(-) diff --git a/poetry.lock b/poetry.lock index 825b8a1..71f00ef 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,23 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. + +[[package]] +name = "annotated-types" +version = "0.5.0" +description = "Reusable constraint types to use with typing.Annotated" +optional = false +python-versions = ">=3.7" +files = [ + {file = "annotated_types-0.5.0-py3-none-any.whl", hash = "sha256:58da39888f92c276ad970249761ebea80ba544b77acddaa1a4d6cf78287d45fd"}, + {file = "annotated_types-0.5.0.tar.gz", hash = "sha256:47cdc3490d9ac1506ce92c7aaa76c579dc3509ff11e098fc867e5130ab7be802"}, +] + +[package.dependencies] +typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.9\""} [[package]] name = "asciitree" version = "0.3.3" description = "Draws ASCII trees." -category = "main" optional = false python-versions = "*" files = [ @@ -15,7 +28,6 @@ files = [ name = "attrs" version = "23.1.0" description = "Classes Without Boilerplate" -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -37,7 +49,6 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte name = "black" version = "23.3.0" description = "The uncompromising code formatter." -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -88,7 +99,6 @@ uvloop = ["uvloop (>=0.15.2)"] name = "boto3" version = "1.29.3" description = "The AWS SDK for Python" -category = "main" optional = false python-versions = ">= 3.7" files = [ @@ -108,7 +118,6 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] name = "boto3-stubs" version = "1.29.3" description = "Type annotations for boto3 1.29.3 generated with mypy-boto3-builder 7.20.3" -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -488,7 +497,6 @@ xray = ["mypy-boto3-xray (>=1.29.0,<1.30.0)"] name = "botocore" version = "1.32.3" description = "Low-level, data-driven core of boto 3." -category = "main" optional = false python-versions = ">= 3.7" files = [ @@ -511,7 +519,6 @@ crt = ["awscrt (==0.19.12)"] name = "botocore-stubs" version = "1.32.3.post1" description = "Type annotations and code completion for botocore" -category = "main" optional = true python-versions = ">=3.7,<4.0" files = [ @@ -530,7 +537,6 @@ botocore = ["botocore"] name = "click" version = "8.1.7" description = "Composable command line interface toolkit" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -546,7 +552,6 @@ importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} name = "colorama" version = "0.4.6" description = "Cross-platform colored terminal text." -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" files = [ @@ -558,7 +563,6 @@ files = [ name = "entrypoints" version = "0.4" description = "Discover and load entry points from installed packages." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -570,7 +574,6 @@ files = [ name = "exceptiongroup" version = "1.1.3" description = "Backport of PEP 654 (exception groups)" -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -585,7 +588,6 @@ test = ["pytest (>=6)"] name = "fasteners" version = "0.19" description = "A python package that provides useful locks" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -597,7 +599,6 @@ files = [ name = "flake8" version = "5.0.4" description = "the modular source code checker: pep8 pyflakes and co" -category = "main" optional = true python-versions = ">=3.6.1" files = [ @@ -615,7 +616,6 @@ pyflakes = ">=2.5.0,<2.6.0" name = "flake8-black" version = "0.3.6" description = "flake8 plugin to call black as a code style validator" -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -635,7 +635,6 @@ develop = ["build", "twine"] name = "flake8-bugbear" version = "23.3.12" description = "A plugin for flake8 finding likely bugs and design problems in your program. 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"flake8-bugbear", "flake8-docstrings", "flake8-isort", "flake8-quotes", "isort", "pep8-naming"] format = ["black", "isort"] lint = ["flake8", "flake8-black", "flake8-bugbear", "flake8-docstrings", "flake8-isort", "flake8-quotes", "pep8-naming"] test = ["pytest"] @@ -1309,4 +1358,4 @@ test = ["pytest"] [metadata] lock-version = "2.0" python-versions = "^3.7" -content-hash = "2327f714f63030814b8905e9690438356ca94a4f4a5ac34ca1bfa3dcf46c7f7e" +content-hash = "0a583d8d68a23566aa3d010ef6e5fe15811191192826c7f484b093e737a95e1b" diff --git a/pyproject.toml b/pyproject.toml index 62a7612..1df5d90 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -17,7 +17,7 @@ boto3 = "^1.29.3" zarr = "^2.12" click = "^8.1.3" tqdm = "^4.66.1" -pydantic = "^1.10.2" +pydantic = "^2.0" # Optional boto3-stubs = {version = "^1.29.3", optional = true} diff --git a/zarr_checksum/checksum.py b/zarr_checksum/checksum.py index 6635a76..4581e0d 100644 --- a/zarr_checksum/checksum.py +++ b/zarr_checksum/checksum.py @@ -2,6 +2,7 @@ from functools import total_ordering import hashlib +from json import dumps import re from typing import List @@ -93,7 +94,9 @@ def generate_digest(self) -> ZarrDirectoryDigest: ) # Serialize json without any spacing - json = self.json(separators=(",", ":")) + # Pydantic's model_dump_json() doesn't support specifying separators, + # so we have to serialize via the json module instead. + json = dumps(self.model_dump(mode="json"), separators=(",", ":")) # Generate digest md5 = hashlib.md5(json.encode("utf-8")).hexdigest() From 248b0b14549547a2e80741e9f3da413618dfa767 Mon Sep 17 00:00:00 2001 From: Jacob Nesbitt Date: Mon, 20 Nov 2023 13:37:15 -0500 Subject: [PATCH 2/2] Bump minor version to 0.3.0 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 1df5d90..db2b2a8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "zarr-checksum" -version = "0.2.12" +version = "0.3.0" description = "Checksum support for zarrs stored in various backends" readme="README.md" homepage="https://github.com/dandi/zarr_checksum"