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import torch
from dig.threedgraph.dataset import QM9_3D
from dig.threedgraph.method import SphereNet
from dig.threedgraph.evaluation import threedEvaluator
from dig.threedgraph.method import run
device=torch.device("cuda:0")
# Load the dataset and split
dataset = QM9_3D(root='dataset/')
target = 'U0'
dataset.data.y = dataset.data[target]
split_idx = dataset.get_idx_split(len(dataset.data.y), train_size=110000, valid_size=10000, seed=42)
train_dataset, valid_dataset, test_dataset = dataset[split_idx['train']], dataset[split_idx['valid']], dataset[split_idx['test']]
# Define model, loss, and evaluation
model = SphereNet(energy_and_force=False, cutoff=5.0, num_layers=4,
hidden_channels=128, out_channels=1, int_emb_size=64,
basis_emb_size=8, out_emb_channels=256,
num_spherical=3, num_radial=6, envelope_exponent=5,
num_before_skip=1, num_after_skip=2, num_output_layers=3)
loss_func = torch.nn.L1Loss()
evaluation = threedEvaluator()
# Train and evaluate
run3d = run()
run3d.run(device, train_dataset, valid_dataset, test_dataset, model, loss_func, evaluation,
epochs=20, batch_size=32, vt_batch_size=32, lr=0.0005, lr_decay_factor=0.5, lr_decay_step_size=15)
torch:2.4.1-gpu
python:3.12.7
ERROR:
/home/asus/anaconda3/envs/DIG/lib/python3.12/site-packages/dig/threedgraph/dataset/QM9_pyg.py:67: FutureWarning: You are using `torch.load` with `weights_only=False` (the current default value), which uses the default pickle module implicitly. It is possible to construct malicious pickle data which will execute arbitrary code during unpickling (See https://github.com/pytorch/pytorch/blob/main/SECURITY.md#untrusted-models for more details). In a future release, the default value for `weights_only` will be flipped to `True`. This limits the functions that could be executed during unpickling. Arbitrary objects will no longer be allowed to be loaded via this mode unless they are explicitly allowlisted by the user via `torch.serialization.add_safe_globals`. We recommend you start setting `weights_only=True` for any use case where you don't have full control of the loaded file. Please open an issue on GitHub for any issues related to this experimental feature.
self.data, self.slices = torch.load(self.processed_paths[0])
/home/asus/anaconda3/envs/DIG/lib/python3.12/site-packages/torch_geometric/data/in_memory_dataset.py:300: UserWarning: It is not recommended to directly access the internal storage format `data` of an 'InMemoryDataset'. If you are absolutely certain what you are doing, access the internal storage via `InMemoryDataset._data` instead to suppress this warning. Alternatively, you can access stacked individual attributes of every graph via `dataset.{attr_name}`.
warnings.warn(msg)
Traceback (most recent call last):
File "/home/asus/stuFile1/mzh/PythonProjects/3DGNN/main.py", line 16, in <module>
model = SphereNet(energy_and_force=False, cutoff=5.0, num_layers=4,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/asus/anaconda3/envs/DIG/lib/python3.12/site-packages/dig/threedgraph/method/spherenet/spherenet.py", line 258, in __init__
self.emb = emb(num_spherical, num_radial, self.cutoff, envelope_exponent)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/asus/anaconda3/envs/DIG/lib/python3.12/site-packages/dig/threedgraph/method/spherenet/spherenet.py", line 28, in __init__
self.dist_emb = dist_emb(num_radial, cutoff, envelope_exponent)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/asus/anaconda3/envs/DIG/lib/python3.12/site-packages/dig/threedgraph/method/spherenet/features.py", line 179, in __init__
self.reset_parameters()
File "/home/asus/anaconda3/envs/DIG/lib/python3.12/site-packages/dig/threedgraph/method/spherenet/features.py", line 182, in reset_parameters
torch.arange(1, self.freq.numel() + 1, out=self.freq).mul_(PI)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
RuntimeError: aten::arange(): functions with out=... arguments don't support automatic differentiation, but one of the arguments requires grad.
The text was updated successfully, but these errors were encountered:
Can't run your sample code:
torch:2.4.1-gpu
python:3.12.7
ERROR:
The text was updated successfully, but these errors were encountered: