aka Elixir QC EBI Qcloud TSI Cloud Portal
The workflow uses nextflow and makes ample use of the container feature. Example use:
../nextflow/nextflow run pxd2qc.nf -c ../nextflow/mynextflow.config -profile local --input PXD011124
based on the generic server Portal app
Input from PRIDE
Workflow inputs are PRIDE submission accessions (PXD). For starters, we will restrict ourselves to Q exactive thermo raw files.