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missing dependency in requirements.txt: arviz #14

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lenarddome opened this issue Jun 12, 2024 · 0 comments
Open

missing dependency in requirements.txt: arviz #14

lenarddome opened this issue Jun 12, 2024 · 0 comments

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@lenarddome
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Hello all,

I just noticed that after installing metadpy that arviz was not installed alongside other dependencies.

> python -m pip install metadpy --break-system-packages
WARNING: Skipping /opt/homebrew/lib/python3.12/site-packages/meson-1.4.1.dist-info due to invalid metadata entry 'name'
Collecting metadpy
  Using cached metadpy-0.1.2-py3-none-any.whl.metadata (12 kB)
Requirement already satisfied: numpy>=1.17 in /opt/homebrew/lib/python3.12/site-packages (from metadpy) (1.26.4)
Requirement already satisfied: scipy>=1.3.0 in /opt/homebrew/lib/python3.12/site-packages (from metadpy) (1.12.0)
Requirement already satisfied: pandas>=0.24 in /opt/homebrew/lib/python3.12/site-packages (from metadpy) (2.2.1)
Requirement already satisfied: matplotlib>=3.0.2 in /opt/homebrew/lib/python3.12/site-packages (from metadpy) (3.8.3)
Requirement already satisfied: seaborn>=0.9.0 in /opt/homebrew/lib/python3.12/site-packages (from metadpy) (0.13.2)
Collecting pandas-flavor>=0.2.0 (from metadpy)
  Downloading pandas_flavor-0.6.0-py3-none-any.whl.metadata (6.3 kB)
Requirement already satisfied: numba>=0.55.1 in /opt/homebrew/lib/python3.12/site-packages (from metadpy) (0.59.1)
Requirement already satisfied: tqdm in /opt/homebrew/lib/python3.12/site-packages (from metadpy) (4.66.2)
Requirement already satisfied: contourpy>=1.0.1 in /opt/homebrew/lib/python3.12/site-packages (from matplotlib>=3.0.2->metadpy) (1.2.0)
Requirement already satisfied: cycler>=0.10 in /opt/homebrew/lib/python3.12/site-packages (from matplotlib>=3.0.2->metadpy) (0.12.1)
Requirement already satisfied: fonttools>=4.22.0 in /opt/homebrew/lib/python3.12/site-packages (from matplotlib>=3.0.2->metadpy) (4.49.0)
Requirement already satisfied: kiwisolver>=1.3.1 in /opt/homebrew/lib/python3.12/site-packages (from matplotlib>=3.0.2->metadpy) (1.4.5)
Requirement already satisfied: packaging>=20.0 in /opt/homebrew/lib/python3.12/site-packages (from matplotlib>=3.0.2->metadpy) (21.3)
Requirement already satisfied: pillow>=8 in /opt/homebrew/lib/python3.12/site-packages (from matplotlib>=3.0.2->metadpy) (10.2.0)
Requirement already satisfied: pyparsing>=2.3.1 in /opt/homebrew/lib/python3.12/site-packages (from matplotlib>=3.0.2->metadpy) (3.0.9)
Requirement already satisfied: python-dateutil>=2.7 in /opt/homebrew/lib/python3.12/site-packages (from matplotlib>=3.0.2->metadpy) (2.8.2)
Requirement already satisfied: llvmlite<0.43,>=0.42.0dev0 in /opt/homebrew/lib/python3.12/site-packages (from numba>=0.55.1->metadpy) (0.42.0)
Requirement already satisfied: pytz>=2020.1 in /opt/homebrew/lib/python3.12/site-packages (from pandas>=0.24->metadpy) (2024.1)
Requirement already satisfied: tzdata>=2022.7 in /opt/homebrew/lib/python3.12/site-packages (from pandas>=0.24->metadpy) (2024.1)
Collecting xarray (from pandas-flavor>=0.2.0->metadpy)
  Downloading xarray-2024.5.0-py3-none-any.whl.metadata (11 kB)
Requirement already satisfied: six>=1.5 in ./Library/Python/3.12/lib/python/site-packages (from python-dateutil>=2.7->matplotlib>=3.0.2->metadpy) (1.16.0)
Collecting packaging>=20.0 (from matplotlib>=3.0.2->metadpy)
  Downloading packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
Using cached metadpy-0.1.2-py3-none-any.whl (44 kB)
Downloading pandas_flavor-0.6.0-py3-none-any.whl (7.2 kB)
Downloading xarray-2024.5.0-py3-none-any.whl (1.2 MB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 10.5 MB/s eta 0:00:00
Downloading packaging-24.1-py3-none-any.whl (53 kB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.0/54.0 kB 5.5 MB/s eta 0:00:00
Installing collected packages: packaging, xarray, pandas-flavor, metadpy
  Attempting uninstall: packaging
    WARNING: Skipping /opt/homebrew/lib/python3.12/site-packages/meson-1.4.1.dist-info due to invalid metadata entry 'name'
    Found existing installation: packaging 21.3
    Uninstalling packaging-21.3:
      Successfully uninstalled packaging-21.3
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
mkdocs-badges 0.4.2 requires mkdocs>=1.5.0, but you have mkdocs 1.3.0 which is incompatible.
dask 2024.2.1 requires importlib-metadata>=4.13.0, but you have importlib-metadata 4.12.0 which is incompatible.
Successfully installed metadpy-0.1.2 packaging-24.1 pandas-flavor-0.6.0 xarray-2024.5.0

The issue might be that arviz is not stated as a requirement in the setup files, namely requirements.txt?

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