COMMON.md

Common

General Resources for Omics

Contents

• Tools
• Pipelines
• Datasets
• Visualization
• Learn
• RunAndTests

Tools

• DataDownload

  • GGD - The command line interface for gogetdata
  • SRA-Exporer - Mini web application to explore the NCBI Sequence Read Archive and easily access downloads for data, either as .sra files from the NCBI or as .fastq via the EBI ENA.

• DataCompress

  • Genozip - Genozip is a universal compressor for genomic files - it compresses FASTQ, BAM/CRAM, VCF and many other file formats (including non-genomic files)

• DataManage

  • MultiAssayExperiment - Ramos - Software for the integration of multi-omics experiments in Bioconductor

Visualization

• Logo
  • LogoJS - LogoJS is a Javascipt package for creating SVG sequence logos.