From 393deba0240cc6950fe28323d175c747866e47e5 Mon Sep 17 00:00:00 2001
From: Jeff Candy <candy@fusion.gat.com>
Date: Mon, 20 May 2024 17:09:34 -0700
Subject: [PATCH] Updated pages

---
 docs/build.html                 |  29 +++++++------
 docs/build/pre_linux.html       |   4 +-
 docs/build/pre_osx.html         |   4 +-
 docs/cgyro.html                 |   4 +-
 docs/cgyro/FAQ.html             |   4 +-
 docs/cgyro/cgyro_list.html      |   8 ++--
 docs/cgyro/cgyro_table.html     |   4 +-
 docs/cgyro/outputs.html         |   4 +-
 docs/cgyro/running_cases.html   |   4 +-
 docs/download.html              |   8 ++--
 docs/genindex.html              |   8 ++--
 docs/geometry.html              |   4 +-
 docs/gyro.html                  |   4 +-
 docs/gyro/gyro_gallery.html     |   4 +-
 docs/gyro/gyro_history.html     |   4 +-
 docs/gyro/gyro_list.html        |   4 +-
 docs/gyro/gyro_table.html       |   4 +-
 docs/gyro/gyro_vv.html          |   4 +-
 docs/index.html                 |  71 ++++++--------------------------
 docs/input_gacode.html          |   4 +-
 docs/license.html               |   4 +-
 docs/misc.html                  |   4 +-
 docs/neo.html                   |   4 +-
 docs/neo/neo_list.html          |   4 +-
 docs/neo/neo_table.html         |   4 +-
 docs/neo/outputs.html           |   4 +-
 docs/objects.inv                | Bin 10889 -> 10908 bytes
 docs/prgen.html                 |   4 +-
 docs/rotation.html              |   4 +-
 docs/search.html                |   8 ++--
 docs/searchindex.js             |   2 +-
 docs/setup.html                 |  20 ++++-----
 docs/shortfall.html             |   4 +-
 docs/tglf.html                  |   4 +-
 docs/tglf/tglf_list.html        |   4 +-
 docs/tglf/tglf_output_list.html |   4 +-
 docs/tglf/tglf_table.html       |   4 +-
 docs/tgyro.html                 |   4 +-
 docs/tgyro/equations.html       |   4 +-
 docs/tgyro/output.html          |   4 +-
 docs/tgyro/plot.html            |   4 +-
 docs/tgyro/scenarios.html       |   4 +-
 docs/tgyro/solver.html          |   4 +-
 docs/tgyro/tgyro_list.html      |   4 +-
 docs/tgyro/tgyro_table.html     |   4 +-
 docs/workshop.html              |   4 +-
 docs/zreferences.html           |   8 ++--
 html/src/build.rst              |  15 ++++---
 html/src/index.rst              |   1 +
 html/src/setup.rst              |   4 +-
 50 files changed, 147 insertions(+), 183 deletions(-)
diff --git a/docs/build.html b/docs/build.html
index 2810ea2..3d364ef 100644
--- a/docs/build.html
+++ b/docs/build.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Build from sources &mdash; GACODE</title>
+  <title>Build on your laptop &mdash; GACODE</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=19f00094" />
       <link rel="stylesheet" type="text/css" href="_static/contentui.css" />
@@ -25,7 +25,7 @@
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="References" href="zreferences.html" />
-    <link rel="prev" title="Environment setup" href="setup.html" /> 
+    <link rel="prev" title="Prebuilt Environments" href="setup.html" /> 
 </head>
 
 <body class="wy-body-for-nav"> 
@@ -51,9 +51,9 @@
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1 current"><a class="current reference internal" href="#">Build from sources</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="#prerequisites">Prerequisites</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">Build on your laptop</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="#first-step">First step</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#source-code">Source code</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#concept-of-platform-files">Concept of platform files</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#environment-variables">Environment variables</a></li>
@@ -94,7 +94,7 @@
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
       <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
-      <li class="breadcrumb-item active">Build from sources</li>
+      <li class="breadcrumb-item active">Build on your laptop</li>
       <li class="wy-breadcrumbs-aside">
             <a href="_sources/build.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -104,11 +104,16 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
              
-  <section id="build-from-sources">
-<h1>Build from sources<a class="headerlink" href="#build-from-sources" title="Link to this heading"></a></h1>
-<section id="prerequisites">
-<h2>Prerequisites<a class="headerlink" href="#prerequisites" title="Link to this heading"></a></h2>
-<p>You will need suitable python and fortran environments. There is detailed help for <a class="reference internal" href="build/pre_osx.html"><span class="doc">OSX users</span></a> and <a class="reference internal" href="build/pre_linux.html"><span class="doc">Linux users</span></a>.</p>
+  <section id="build-on-your-laptop">
+<h1>Build on your laptop<a class="headerlink" href="#build-on-your-laptop" title="Link to this heading"></a></h1>
+<section id="first-step">
+<h2>First step<a class="headerlink" href="#first-step" title="Link to this heading"></a></h2>
+<p>You will need suitable python and fortran environments. There is detailed help for</p>
+<ul class="simple">
+<li><p><a class="reference internal" href="build/pre_osx.html"><span class="doc">OSX users</span></a> (MAC M2)</p></li>
+<li><p><a class="reference internal" href="build/pre_linux.html"><span class="doc">Linux users</span></a> (MINT, UBUNTU)</p></li>
+</ul>
+<p>If you need more help, please raise an issue at <a class="reference external" href="https://github.com/gafusion/gacode/issues">https://github.com/gafusion/gacode/issues</a></p>
 </section>
 <section id="source-code">
 <h2>Source code<a class="headerlink" href="#source-code" title="Link to this heading"></a></h2>
@@ -179,7 +184,7 @@ <h2>Building<a class="headerlink" href="#building" title="Link to this heading">
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="setup.html" class="btn btn-neutral float-left" title="Environment setup" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="setup.html" class="btn btn-neutral float-left" title="Prebuilt Environments" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="zreferences.html" class="btn btn-neutral float-right" title="References" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
diff --git a/docs/build/pre_linux.html b/docs/build/pre_linux.html
index d7b1c0f..e3c24db 100644
--- a/docs/build/pre_linux.html
+++ b/docs/build/pre_linux.html
@@ -49,8 +49,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/build/pre_osx.html b/docs/build/pre_osx.html
index eec1f0a..af5723d 100644
--- a/docs/build/pre_osx.html
+++ b/docs/build/pre_osx.html
@@ -49,8 +49,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/cgyro.html b/docs/cgyro.html
index 91ecd08..932cd9f 100644
--- a/docs/cgyro.html
+++ b/docs/cgyro.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/cgyro/FAQ.html b/docs/cgyro/FAQ.html
index 72972fa..4d27482 100644
--- a/docs/cgyro/FAQ.html
+++ b/docs/cgyro/FAQ.html
@@ -50,8 +50,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/cgyro/cgyro_list.html b/docs/cgyro/cgyro_list.html
index c3d5411..0288283 100644
--- a/docs/cgyro/cgyro_list.html
+++ b/docs/cgyro/cgyro_list.html
@@ -7,7 +7,7 @@
   <title>Alphabetical list for input.cgyro &mdash; GACODE</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
-      <link rel="stylesheet" type="text/css" href="../_static/contentui.css?v=4cf5b151" />
+      <link rel="stylesheet" type="text/css" href="../_static/contentui.css" />
 
   
     <link rel="shortcut icon" href="../_static/favicon.ico"/>
@@ -20,7 +20,7 @@
         <script src="../_static/documentation_options.js?v=5929fcd5"></script>
         <script src="../_static/doctools.js?v=9a2dae69"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="../_static/contentui.js?v=9ee86694"></script>
+        <script src="../_static/contentui.js"></script>
         <script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js"></script>
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
@@ -50,8 +50,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/cgyro/cgyro_table.html b/docs/cgyro/cgyro_table.html
index 9ad305e..96d0694 100644
--- a/docs/cgyro/cgyro_table.html
+++ b/docs/cgyro/cgyro_table.html
@@ -50,8 +50,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/cgyro/outputs.html b/docs/cgyro/outputs.html
index b4d85ef..3e169a0 100644
--- a/docs/cgyro/outputs.html
+++ b/docs/cgyro/outputs.html
@@ -50,8 +50,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/cgyro/running_cases.html b/docs/cgyro/running_cases.html
index 062eefc..1c4106a 100644
--- a/docs/cgyro/running_cases.html
+++ b/docs/cgyro/running_cases.html
@@ -49,8 +49,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/download.html b/docs/download.html
index 8644e26..aefc0c4 100644
--- a/docs/download.html
+++ b/docs/download.html
@@ -24,7 +24,7 @@
     <script src="_static/js/theme.js"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
-    <link rel="next" title="Environment setup" href="setup.html" />
+    <link rel="next" title="Prebuilt Environments" href="setup.html" />
     <link rel="prev" title="GACODE License" href="license.html" /> 
 </head>
 
@@ -55,8 +55,8 @@
 <li class="toctree-l2"><a class="reference internal" href="#repository-access">Repository access</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
@@ -182,7 +182,7 @@ <h2>Repository access<a class="headerlink" href="#repository-access" title="Link
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="license.html" class="btn btn-neutral float-left" title="GACODE License" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
-        <a href="setup.html" class="btn btn-neutral float-right" title="Environment setup" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+        <a href="setup.html" class="btn btn-neutral float-right" title="Prebuilt Environments" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>
diff --git a/docs/genindex.html b/docs/genindex.html
index 02c173c..1b36d98 100644
--- a/docs/genindex.html
+++ b/docs/genindex.html
@@ -6,7 +6,7 @@
   <title>Index &mdash; GACODE</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=19f00094" />
-      <link rel="stylesheet" type="text/css" href="_static/contentui.css?v=4cf5b151" />
+      <link rel="stylesheet" type="text/css" href="_static/contentui.css" />
 
   
     <link rel="shortcut icon" href="_static/favicon.ico"/>
@@ -19,7 +19,7 @@
         <script src="_static/documentation_options.js?v=5929fcd5"></script>
         <script src="_static/doctools.js?v=9a2dae69"></script>
         <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="_static/contentui.js?v=9ee86694"></script>
+        <script src="_static/contentui.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="index" title="Index" href="#" />
     <link rel="search" title="Search" href="search.html" /> 
@@ -48,8 +48,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/geometry.html b/docs/geometry.html
index 763f871..1403f18 100644
--- a/docs/geometry.html
+++ b/docs/geometry.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/gyro.html b/docs/gyro.html
index 0b5df4d..c8896b3 100644
--- a/docs/gyro.html
+++ b/docs/gyro.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/gyro/gyro_gallery.html b/docs/gyro/gyro_gallery.html
index 1112495..8431e75 100644
--- a/docs/gyro/gyro_gallery.html
+++ b/docs/gyro/gyro_gallery.html
@@ -51,8 +51,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/gyro/gyro_history.html b/docs/gyro/gyro_history.html
index a0d376e..fc4a6d7 100644
--- a/docs/gyro/gyro_history.html
+++ b/docs/gyro/gyro_history.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/gyro/gyro_list.html b/docs/gyro/gyro_list.html
index 3571083..c5ea918 100644
--- a/docs/gyro/gyro_list.html
+++ b/docs/gyro/gyro_list.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/gyro/gyro_table.html b/docs/gyro/gyro_table.html
index 82f5f78..2e6a30d 100644
--- a/docs/gyro/gyro_table.html
+++ b/docs/gyro/gyro_table.html
@@ -51,8 +51,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/gyro/gyro_vv.html b/docs/gyro/gyro_vv.html
index 309a92a..45d2dbd 100644
--- a/docs/gyro/gyro_vv.html
+++ b/docs/gyro/gyro_vv.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/index.html b/docs/index.html
index ad1e041..b29603c 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -7,7 +7,7 @@
   <title>The General Atomics GACODE Suite &mdash; GACODE</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=19f00094" />
-      <link rel="stylesheet" type="text/css" href="_static/contentui.css?v=4cf5b151" />
+      <link rel="stylesheet" type="text/css" href="_static/contentui.css" />
 
   
     <link rel="shortcut icon" href="_static/favicon.ico"/>
@@ -20,7 +20,7 @@
         <script src="_static/documentation_options.js?v=5929fcd5"></script>
         <script src="_static/doctools.js?v=9a2dae69"></script>
         <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="_static/contentui.js?v=9ee86694"></script>
+        <script src="_static/contentui.js"></script>
         <script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="index" title="Index" href="genindex.html" />
@@ -51,8 +51,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
@@ -128,14 +128,14 @@ <h2>Equilibrium and Profiles<a class="headerlink" href="#equilibrium-and-profile
 <li class="toctree-l2"><a class="reference internal" href="download.html#repository-access">Repository access</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a><ul>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="setup.html#nersc-perlmutter-cpu">NERSC PERLMUTTER (CPU)</a></li>
 <li class="toctree-l2"><a class="reference internal" href="setup.html#nersc-perlmutter-gpu">NERSC PERLMUTTER (GPU)</a></li>
 <li class="toctree-l2"><a class="reference internal" href="setup.html#ga-omega">GA OMEGA</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="build.html#prerequisites">Prerequisites</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="build.html#first-step">First step</a></li>
 <li class="toctree-l2"><a class="reference internal" href="build.html#source-code">Source code</a></li>
 <li class="toctree-l2"><a class="reference internal" href="build.html#concept-of-platform-files">Concept of platform files</a></li>
 <li class="toctree-l2"><a class="reference internal" href="build.html#environment-variables">Environment variables</a></li>
@@ -233,24 +233,7 @@ <h2>Equilibrium and Profiles<a class="headerlink" href="#equilibrium-and-profile
 <li class="toctree-l4"><a class="reference internal" href="neo/outputs.html#experimental-profiles-output-files">Experimental profiles output files</a></li>
 <li class="toctree-l4"><a class="reference internal" href="neo/outputs.html#rotation-output-files">Rotation output files</a></li>
 <li class="toctree-l4"><a class="reference internal" href="neo/outputs.html#subroutine-output">Subroutine output</a></li>
-<li class="toctree-l4"><a class="reference internal" href="neo/outputs.html#detailed-description-of-neo-output-files">Detailed description of NEO output files</a><ul>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-equil">out.neo.equil</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-exp-norm">out.neo.exp_norm</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-f">out.neo.f</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-grid">out.neo.grid</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-phi">out.neo.phi</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-rotation">out.neo.rotation</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-species">out.neo.species</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-theory">out.neo.theory</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-theory-nclass">out.neo.theory_nclass</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-transport">out.neo.transport</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-transport-exp">out.neo.transport_exp</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-transport-flux">out.neo.transport_flux</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-transport-gv">out.neo.transport_gv</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-vel">out.neo.vel</a></li>
-<li class="toctree-l5"><a class="reference internal" href="neo/outputs.html#out-neo-vel-fourier">out.neo.vel_fourier</a></li>
-</ul>
-</li>
+<li class="toctree-l4"><a class="reference internal" href="neo/outputs.html#detailed-description-of-neo-output-files">Detailed description of NEO output files</a></li>
 </ul>
 </li>
 </ul>
@@ -330,46 +313,16 @@ <h2>Equilibrium and Profiles<a class="headerlink" href="#equilibrium-and-profile
 </ul>
 </li>
 <li class="toctree-l3"><a class="reference internal" href="gyro/gyro_vv.html">GYRO verification and validation (pre 2010)</a><ul>
-<li class="toctree-l4"><a class="reference internal" href="gyro/gyro_vv.html#verification-studies">Verification Studies</a><ul>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_vv.html#cyclone-base-case-with-adiabatic-electrons-2001">Cyclone Base Case with Adiabatic Electrons (2001)</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_vv.html#local-limit-of-global-simulations-2004">Local limit of Global Simulations (2004)</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_vv.html#gyrokinetic-simulation-of-impurities-2004">Gyrokinetic Simulation of Impurities (2004)</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_vv.html#electron-temperature-gradient-turbulence-2006">Electron Temperature Gradient Turbulence (2006)</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_vv.html#energetic-particle-transport-coefficients-2009">Energetic particle transport coefficients (2009)</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_vv.html#compressional-electromagnetic-perturbations-2010">Compressional Electromagnetic Perturbations (2010)</a></li>
-</ul>
-</li>
-<li class="toctree-l4"><a class="reference internal" href="gyro/gyro_vv.html#gyro-validation-abstracts">GYRO Validation Abstracts</a><ul>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_vv.html#comparison-of-gyro-synthetic-diagnostic-results-with-diii-d-bes-and-cer-data">Comparison of GYRO synthetic diagnostic results with DIII-D BES and CER data</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_vv.html#comparison-of-gyro-synthetic-diagnostic-results-with-c-mod-pci-data">Comparison of GYRO synthetic diagnostic results with C-Mod PCI data</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_vv.html#comparison-of-gyro-simulations-with-fast-sweeping-and-doppler-reflectometer-data-in-tore-supra">Comparison of GYRO simulations with fast-sweeping and Doppler reflectometer data in Tore Supra</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_vv.html#anomalous-transport-in-the-diii-d-tokamak-matched-by-supercomputer-simulation">Anomalous Transport in the DIII-D Tokamak Matched by Supercomputer Simulation</a></li>
-</ul>
-</li>
+<li class="toctree-l4"><a class="reference internal" href="gyro/gyro_vv.html#verification-studies">Verification Studies</a></li>
+<li class="toctree-l4"><a class="reference internal" href="gyro/gyro_vv.html#gyro-validation-abstracts">GYRO Validation Abstracts</a></li>
 </ul>
 </li>
 <li class="toctree-l3"><a class="reference internal" href="gyro/gyro_history.html">Gyrokinetic Simulation in the 2000s</a><ul>
 <li class="toctree-l4"><a class="reference internal" href="gyro/gyro_history.html#prehistory">Prehistory</a></li>
 <li class="toctree-l4"><a class="reference internal" href="gyro/gyro_history.html#design-history">Design History</a></li>
-<li class="toctree-l4"><a class="reference internal" href="gyro/gyro_history.html#yearly-publication-synopsis">Yearly Publication Synopsis</a><ul>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_history.html#id20">2002</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_history.html#id22">2003</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_history.html#id25">2004</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_history.html#id33">2005</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_history.html#id40">2006</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_history.html#id49">2007</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_history.html#id59">2008</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_history.html#id63">2009</a></li>
-</ul>
-</li>
+<li class="toctree-l4"><a class="reference internal" href="gyro/gyro_history.html#yearly-publication-synopsis">Yearly Publication Synopsis</a></li>
 <li class="toctree-l4"><a class="reference internal" href="gyro/gyro_history.html#a-computational-science-and-user-perspective">A Computational Science and User Perspective</a></li>
-<li class="toctree-l4"><a class="reference internal" href="gyro/gyro_history.html#urban-legends">Urban Legends</a><ul>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_history.html#ul1-the-local-gyrobohm-limit-of-global-codes-differs-from-local-codes">UL1: The local gyroBohm limit of global codes differs from local codes</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_history.html#ul2-full-torus-simulations-are-necessary-to-correctly-compute-the-local-transport">UL2: Full torus simulations are necessary to correctly compute the local transport</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_history.html#ul3-eulerian-codes-have-inadequate-velocity-space-resolution">UL3: Eulerian codes have inadequate velocity-space resolution</a></li>
-<li class="toctree-l5"><a class="reference internal" href="gyro/gyro_history.html#ul4-the-parallel-nonlinearity-can-have-a-dramatic-effect-on-the-transport">UL4: The parallel nonlinearity can have a dramatic effect on the transport</a></li>
-</ul>
-</li>
+<li class="toctree-l4"><a class="reference internal" href="gyro/gyro_history.html#urban-legends">Urban Legends</a></li>
 </ul>
 </li>
 <li class="toctree-l3"><a class="reference internal" href="gyro/gyro_gallery.html">Gallery of classic GYRO images (circa 2003)</a></li>
diff --git a/docs/input_gacode.html b/docs/input_gacode.html
index 59ee2d4..6bde920 100644
--- a/docs/input_gacode.html
+++ b/docs/input_gacode.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/license.html b/docs/license.html
index b73e7df..d201fe0 100644
--- a/docs/license.html
+++ b/docs/license.html
@@ -51,8 +51,8 @@
 <ul class="current">
 <li class="toctree-l1 current"><a class="current reference internal" href="#">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/misc.html b/docs/misc.html
index 48129d7..3878e74 100644
--- a/docs/misc.html
+++ b/docs/misc.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/neo.html b/docs/neo.html
index 8f9307b..172a98a 100644
--- a/docs/neo.html
+++ b/docs/neo.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/neo/neo_list.html b/docs/neo/neo_list.html
index ad3a0f1..73fe20f 100644
--- a/docs/neo/neo_list.html
+++ b/docs/neo/neo_list.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/neo/neo_table.html b/docs/neo/neo_table.html
index a71cbef..ffaa16a 100644
--- a/docs/neo/neo_table.html
+++ b/docs/neo/neo_table.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/neo/outputs.html b/docs/neo/outputs.html
index 8bb2c41..8bf218e 100644
--- a/docs/neo/outputs.html
+++ b/docs/neo/outputs.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/objects.inv b/docs/objects.inv
index 12efc3aae7e958d6b1c325ef239415c5e5449316..4592a21e587572d88c852163f5c7dd0ed259a00e 100644
GIT binary patch
delta 10817
zcmV-HD!$c;Rh(6jcYkx^xY6!Ce+8@77n`jY8INa^bCNsRqHVn+OBzX@uNxL6Q8r_V
z)R2_Fe*Ni20|ZEd5}?hg%4{sMpQk|(1RCf@<Kq1M!Y|6zzc<k$-uUdJ|L~S)AMiin
zV^Wk^{`U9Ba=ZC0SzVm_%)2;0|70tFLGpjv%KwAp|6wWr>3<W+|I<?bPf`B=V=MnJ
zlK;P!^8XO>|FV?-Cze0*m)Ul=FQYQa(rDus%Op;hu^*)?e_zD8zl-x?7ca}?Ikw`B
zSdEYgLI#8k37JmV^RH^!XPWkV)IL$dUbK8lvzJZ0df3KkS=38YJZ5>hjy4-A#hKr$
zOMB5Oi58$|8Gpu`cv%OR51aJ|{7<-nM-k5<<r$an^#{Gn-h6Ns2E*XWiyq>171dc@
zviu2(v8zgO6O8&jFWT%LqcFD6h=L3%WjML*g@FKWqvfM5mdg_Su6K1S7<RVsoxn~6
z@Yfz*hP84bO%z}5gHct0BC_QGNy5)$y}hq(u^>s<pMTecUBvMApi!Zqzs_<$NujCz
zeTi+hPRcKR;QwvX3KE8w8IUke!ic1IOwGZ9w9BDBDZ5e}EyU3>q;aDNaNz^|vn&9@
zdxz-{s>c^;`F=Y}z!`c+RCJUflO<Ruo4DvI2S@?W(c)yHFpS8078<>1yR&JC(3RXx
zQ25+h`hOh7!`)*NrWQ?XyJH~AQbdN6+d(+;qBJS8aGR~-P58&rCW69@3;Vs%U^Wi#
z#{FOz{sA=EHrizS!Y}hEEq2gJ!+Y_|$Jk#bNy1isnLS0@=*izk<?=CJ`HMHd*uxk>
zqX-NEMY7#*_yE!MB+t*X7(yAVltC+Dpp20+CV!MMp^PowSWOwzl=Z5j&znW>4+aC)
z_vfPMcdF>KTG3|}n->+~M~jwTz>VH4{OB!2-P`n?3#xkTJugMgL;tzJQbAoVwn<U6
zYLD7ZzE9I6eF&FP5f_3CVN8QvHh4T})zGJxQGTphpdjOdm%$wR^m%Wpz+nMjMr_ld
zD}NeBkcupvUG;_mr?ePe&p1$shx;@sZI#E2OLKU5KN`$64!6f3Cha+hPd-StPgn3d
z*dlxNw{iKHtr|@}&fv1Nv~+PM#4p<vK>HdN$-7-4fr`ssj=zVq!A~euxm>;+d(%+2
z^Q)_G-eR9@sLZQuiK6@hm+>$8J!nvG*?&IwH_@)lb^=hpSXZVPe&c_#EM+Lngm5?Q
zhg}{+8Pol1t3>J+mF<49Ps{y>yCf|&Y*ut2;RfNxv+w>a!;XSrQ1hLoKck|8h^I^t
zLCr4^<<-rP>DcQsQY4iwMFW&+5TkcY_r>SUFEP3#hAPfgV-dvCp!F}#FD?$*x_?9}
zuQ4u8tlxABqWy5)`_g)LyhzUve|XKd*%oiKTMJ7}$Cc4Se6t2pev??|(E|GK{1Bn2
z+%}nB>z!3x?||DR?f%)H(k1^2FA+;<X-Cj&LSeKgD(JZr_MFTMx_?4%PDIE0bVYC9
zRV(Iphu!2mrM!nbZ=u1VuNBO#9)DLbwfo(JG+dl|VUk#88xVp4JB-sfTqW!EzRL_S
zQ&t2F2$&+c8V`qq*<d^hgHaIn2iMp4_{*p^k8x=rK2@oN*Hun~*?c?=S_;=myjhXm
zbc#X_7gnrNcs&S)eX^?B3ilhZ(8@g7nS0)&8UfEFUQ>BL1Pg9H9ZZ5*OMmAR7?`_L
zlo3#A`8)}xlNSBSwb!gSbB%4Y?O$mV05`OWyYXFTn}FeZsh;c<ofQLrL{05v8eFMo
z6`G+E%E(>~i9=1zdpbc_I#RHbNWyuYCN!Cm7Hra<6r|x@Fuxu5EAF&#VFc-ZFq*-1
zP~bOdy2>3GNWMQDjrvoarGIo}DT!sSv%GJk2L}=^-v4>myAcF&xQ$-z31WugL3r2u
zE(v~tS(q&HWWRO&`ZTEc{(>*}gW=$EI=H{9eSvYFXL(p=F60Pd2nnXs@id%|B^mXz
zyBw_LaJ_M<KI&pQl5r&Uu9N9tG!L(bRi&=;_?KI05y1<4Jq^BSWq*B$w%gX~>mecz
zV6lJGySu|x*cy$i*&xV-%^)ai1_KfATq$>gY*ME=t$e#$`6l)9tvCDElioE)>hJpI
zdU*f6{jMK&`*4vwY~!t~g591GQ1DOg!^^?VU2vz<Kb}<hN4?;;?LsFzC+m#F2NPwT
zJw>~n!#F|WpL>&u9DgUC-W<?x{^uV8w~4lkRRn$b;?1F<5Q-6M*t@&z_riW~`6Do}
zx;8?cTeL)7L#;Wsy&;E~xit5LD70(o5F<*3OpVeMg$ol%-}Po{AcUbHER(HMX<ive
z!1xi)2X|FTGW2qt)YJ*8w|B6o0%-27M!(%9VIHMVVV19Ahkub5a13#baCehIIPHx-
zhvR8Km<nz_UC19C8a1CGAc9W{rZ+z-CO*oz5D`Gw`W4N?CR;=s7aoBag*U_TWp7w9
z<>*XwViJfER8)VUF`+XwahYtSOhQKCYyt*rHKj<y@-cR?RryLf07l{bHmK}Xpvm$q
zS-Cx5g#ohhbbmbPYtQ(axG;hADEvN<=q%kNX&mK_A3=qqFJLqt4F{v3H`SYex({QA
zPc_{$5Fg!#L7)hn+tj{lRQHWmwcmx@6Xim-V+0x9PeSf2)ySM1DX__A3Uu{`3Vg1u
z3+P1q0ye#cQKwdvv4fRFy&1<)H#VCGlZr3HB{)}OTSmZyp*@+7uLr}RW@PVP9hTBi
zc=BB?r2Vo7{_?*_&^{`l(eBGU+Bmj%9ZF69%YAPKP5yp9?G5!-kJIfacddVcqBnqZ
zldK3Df4M@HXB2PZ+5jX@w1DY&-kUd9IvjfD!k0a9;ks&2h;@TmsIMFpu0~}c%*t7)
z8<s`*9=jEW%g@4}>XR)Vqg@;>v%=wn;26d+v)kSz2(QMo^CsWN6Zk$VzK>15ixc=R
z6yHUY@6!o<pA_Gx8eefz4HkMG&f2wDoK%m6e_oTbc3l=H)n=jB=d4|$#YuHq=(RdC
z)hqOUC$MsqWQESM!Fmd(#;Efp>(Ye^#b>vJYq|JWz&PbR4<HZ?1~VAi>b8FwyZD&6
z^gOtmR8t*3w1>M*=I~$~!#IZ91L0&imXEk!6>nSa40n7?1*Av4@6UeR-39aM5B+i7
ze~qikwrZGGCs<a>uxi>>?q*eGRW*#N{q7}6SJ-GDz!Y+<LXKsG6}33|HW>A>5#NAO
zq*df|yvdeH`Q|!jlsGYG{2C0$SA+SF+MMy-p6=cMSvAG?FkY`6pbW)-hQal<PT;(<
z&UxgzI;X3zs=JN4Tv{7(-`DVo7Nw(?f8%}45JjGipV#3WEH&Mm;kG!=rD<vWFZdo^
zy^bgQ8(ln&C;J#(yo;y%72Q0FC-@SNc@Yo!58L5FN4<t8`wLw>g@46I=<XfNwp$E=
z$5jS@UqlbFWjvk^WCXlwaUuOK%98><lx*!&@K6<eSokkV`RK1B_|l7)INo9We+Y)y
zud>~41HEe=uQ&0s#NaacwThr?!AM75>HA$C9Sgiv+F7<{!kVbGGt|y%+WBq(p`F#V
zGt|zbHbFZh?N_yj<DoPb57$5VaC3aP8PXf;?k&YpGg<mD3_qk<fqz1C+HXpsZ;9{Q
z-z^hjJfVW53Z_&rp@M3Rt6-plf7gkz7LFG4irqmmCszYr%+nrK1nMrJN5Ohs%3A#Y
z@ysGl7j*F^vJ?&Cw1*dAx|hL>7yK%is#*ZSg7%!?_Kq^oVC+gc8+35xK3|B&_4~#7
z$Me70JZr_s8jP&Q$dHgfk19gYD8j^01W(&mgLQy$$p49!*&>P3X7DSPf3L_k&vCAb
zC!qK)Fd({uUbSieSKI@Y=`!Axczp+7+d9j)rZ7V-$Wb6ri$usM!!9n=lHwL0Dgb&7
zLA=cTUG@^^h3VPiUwf*XN~s_~y+i>02NMKWHU8_0f5LC;>fvJi3U4bxj|jY%b~Bf2
zKrO|fPKU}?dypDc7ci#8f9di~^kP}QjQvHliEtOxVa*aLx>rOpiM%>U40^$;PSU7s
zzR7xk@fq+`g5EOE3Y=NPD7V0!KHDgN!oF61a)-8KDJ;{m^4s^X4s(0Ux8){F@d1k1
z$H9@Fs@kI^KVte?&OaXiV2O|+Awxo{#rmc%PRNkYzY+zwMBP_ae*t<`0fI&WJTcH<
zz-PM!Qz67qha&w-nt&oyv}s3aI3dwj(lsP@csO$|TOrBIMgc@DFm|^Upx?oytN0&(
z_XcyB6p9T4>pEJ-|8qcVY1T><tfJ^F#xZT4!J%#51wd|V@>By4*cr!B<eL`K<dwee
zU4a?t8CGsh;qkOie@j7GFtN4Kh;djbN+DP<{q-C|!<s>1?%`mE1Hmw;>-fGPJ@gCz
zhWWg<59oNuE--34kKY$8)s`H|%RQrIzTaAJ<C5eRkO5bbJfyzZ&uX>Zl^{$)`owTc
zKY_4}V2lGxJ1&+mDU*W`?wjil+sBHm1?@{3rqSR~2ZHrbfBt@lzERMKJ{LCKhGs2Q
zZ+);67q%H;n8FA%YuMoOC~VK7l{CWp=yx1O&AC_?6nYI1C43O}V75iEepae$F@XXH
zre<UdW+*HfCcSA-qk*ZiJq^yQB@N7}D;nF1D7A{1R~3=Hq?;_N?a7hXXg@(;N>n?(
zqlY|>(M(b3fA+n4fohb$$zN*Ew}Ks1w|h*^SGh%RI=LO3_o4Ge$KdMKvPUIh>Qm8~
z*#AzwD*6W<NKjak3`UZ~cBSl01dk%XzUc2-(SNF<TgRU2QK#{GEq31<;$-RuU?nOd
zWP&=>i<5^qeU3K!*uDEzSiJ|9W|xm1ggB328Wj5vf4CZsjRz-1`wh<!fL7K&kD7Us
zj%jpE(lJHHcp3+3!})Vf`HfUQZz}hA{1MF=qa6Nk6KkW}GK1PnFrPt5HsQaHmsavI
z$){~()%h6D@(?(x_e8vu%Lq&mZ2%64Lyf=i5)-I1{&7FU6diX@b<YnqX{MwD6NeYW
zW1S!Ge+&ZXbk9i`T47SY$47e*F3hAbCkSVg!Te`1^{NW+`3!o+SHjx6@yxX)e=@@I
zbu5kz46Jj$hp&p^jt)=7f=bTQ!oJA{rpS~=twTQ*zgFd{;>5XuEdfD;X(DcTM}pD~
zRcaB6?i7S>3O|p_2WyiZWTn9#%x|Q*UYmoPf9tJb_0(qds^Y%G7(Ku+$=<Ny>0oy-
z^o+{tCSGt<2Na{kHQW6nhs(G|T+NxVr-=AMXkmV#YV+f7oP{YCZIY(31U9<7bz}^1
zlAAuEdE>UvQ}z`c-%&uU&f^miYeN&%Z5ih_GtBG3a1K4m8Xc@J$*QzSp@OoEWUtYY
zfBJ3EpWgyQ&Nsit-Fu?B2!&Z)SJEC2y)X9k9%N5)sDIG`tO8)bKAYW7;o}MXn_$e{
z<Q^{F88b4p7apN5lyD6Q|BL)p0<#ooAuz%xt7BXm8ux%lOrjY_Umqm*Ty~VS_mbe1
zJ$!PTH$N(#p!<ejh3L;a)>agRaR^h8e{03o<7{8#EpJ^q<b7C|D)GbhTxEWEh<tc~
z4-JMQF85-;_Cv%-;HKxpOT9q|UwqpnOPCcmW*g$7gz{B9DR|Sn0<Hd#ege&A6GOv+
zDd%z%6$RKPeE3ViI)+~A_hphVBOh~kbs9s0LTckbaIP!($dN#NjMFim66~g}f0=s;
z44OTMJweUgK+gMs4($MP*!$Dm_2azX=g>}{hvj2b+H`C;SGT>n2X;HREt>sFsw@tF
zfPaEy7N&2<Ob3u+AO-zPIQqdcZ_V&dGYG{H^<yydYMq>z=+?Tpj?T>7Icl~OJhc$1
zWDSFpslKGR*qtOa(x7z8wyNVBf2tmA-y?sGPcPNl{qNCg1^v*)KiGew6g^bU@3UbP
z0k-nnaVXQE{>|rahnT$+c6=S%>xFZ=g|%(SrKNRvGwt;+rG3~;%%SpfaAVz^va71r
zO2oz|BIBgFAn&WBw}Vr_)Hqqua272JFtV0SzV-x?BBv@KQ$WuDRZ;fje;uI=OiGw7
z3Ux3M(6s-)gITbZ7gPjpDJnkM(8>c$<o@Kvu~X``hKA<*X^$Ijqd{|F*UYc4`uaC;
z<tZU&txEDF(?bF8dEwPFZJ9~!5}5FGBMQ{YUedUAFn39V>-pJCBwnfWiwYgmj>(K7
zt=wY|TJ09*+O=An*Lbvee-xP#jCgF{q@g^}xRUK|pC=`5ufjE!Kdn9yLy^F~QB;iQ
zEbS;5C>=DFdaiq1yLY$BPXOO?2Jihji5uHocR7sof`)|oS6&I<Y7Ap>(MuM2WR*(t
z%pY7%dzd;h!O_kNfTN(NEE3U{HDhEBZ}J9Lvf$I|mDx5~7SeE?f9;bp_Q(g@H8-w%
z-YM;%COc?=J@KKDMcptfaE?iLbT%Q&Jejf(`{Z`cLc;{9Y`j^S6p?>g%{+y^PG9SA
zhH$s0ywrP-PQBV{fv#A9+d5^Rq|}94HB~RJQAxgDp&qU;oaphZp!&4lu#?-g%1C>+
z4I6As!nB=+3)?O5e{)g3yw9P0asMfP^LP8jMs&P|Sn7)lT>3H0Jsai)z?lvg3x7KN
z^HB}n)9bnA6TF^N`M;l2>ECR=-OoQj5a;KnMMk3<E-h9VKmWLy4rKJK>%R8x9qp&>
zWw+bKu1~N<d)KGe&H3~uNsFgAw>E5ryfkfxgVF4BFqOtFf4m=&0?Y7J=KcgABKMVe
zr14cqsjtNI0Ojh{mI)-0p#NRq+U~1ESnk6jJa=Rv2i8p-uNKkr$v7+PV#7KTI2r|!
z7i%gA`j@?{&omlx4bQj+72=d3%+k%9n;H)09w&xiP1o1)@M{p_<Rcu9hCh_T$N02I
z0+XiwNVkFEf05wdQ?(1$MFj$@eXx}d`1d)K`(Z03dAzZIxg?Ba(_koGE%ZalY9DQk
zF)N3t2qptph;%mS-}i<xdPUIleXTCfFL$+8k1lt%R!?2PcN^tNX3JQ~BirmM81<%u
zF=r}IYzC#N8O%-1piEBGkeD<K+8VgsvQ2o*r`-6if5mOvS<IY=aULE=%z0|z<=k8z
z*45pRx>-w|XPZIfj1q^qr3^7A3#sCI$%~%li5y@LEy-8m!{mw3QFon$9wr$%9&@6n
zBH;*&+{7pcw>avf=aRalowQ_|6ia;!#NRXk-oan-W)neq_XU@$e$`b~5PVa0P_{Cx
zPww8Bf4m_yWve~BCt9gIDSwJh<`j|vOVh>cE<u{#{Z8^I&%1j%mcxly%qdvfji;S>
z#UbTNGuetunw55f6?1A8Q<0kqRXS3sn4s+hD#p|)CTKljid(7_bCQ&HdK8mhnG_{m
zL`71V%&hkJO|sm`8eR5ggBdrnBtw$gGk~mQe;ACs)GB~2rP#F*g{{eB2}JiGBcCyj
z(K8)cAUgti-@)bHilM|<$uZ%txjS7iY@<~5hd6o^Le0x=qSDsyCTfMDO=8G8+<Y+O
zbA(Q5{jqAgQ~RT=bt-tIGNps(BsLkwIf0hr7VkRlIz)<NI}Z_I71E7ldh$*J+5|-t
ze^LcTbEIXcEXOv&Wfk7?Lz5KkuvtM>IuxZAKC9vFLTD9<DU4R9vkIlv>DuA6iq55?
zjA6B$$}U=!(+E)+w~7*0(QODOL5gy#fVPot6+uU|8z*#)_2Q%!@m`3sa{(h`-3=_U
z7Or3k*4@D<VYRY{U_Cn{-nClgL!h3Oe-ZE68Q+N14RE|`ZF|M0#CODCX$r-r{Bp!#
zYZArgymCZhXBx%rd~yW0FmGZ#?;A&1f6y&61Cz3Sv_kIT*61FlK6sCZ&tN7g8z>jX
z^idRS6HdqTIth#%dGhQ;#RyUnhG4-Dz7j1N3V-LHsGar0s!!Ulq3e9FyD-IVf13`J
zuRF#eO^zDz+JSLhQLSqn?Fh1iG+bQA*2ti{cHly34OwH7z9R>^3ex1L5qEy7oxBp!
zV5qUe2ie;AbdXd4>UaZXm~ub7Gcyx7BU@dMd47FZM}=vzn7Kn}zo+oyhu|C8I`p)i
zpO%U^(9GAN>f!k$MF2B#)s#HPe=hwGN^8g_Q@GCdd15ko4ly!`GB9xsavfZn;HJes
zb6+eM!U-vs{p32hG|$BnU_(=RvZm6cY2KmfB+E`JYg>3yquJ7{l!9$>eu6rLH5Gw%
za&A!JOm52AiPFDpNHF0hUd<mf>$xt-(o}bPJ61DY+<_Kiq(o?CAfY%9f2?2;&wd$>
zzXsE=C#aIti7H7I)nL>?6<#=!u?w9pydc5@2{t<z52n^c`NDo$-pr0kaBHK!nH7`Z
z@3F0NJsYOLw)O^gVo?&XxI>U*JMw6D;EfqHYdjyFcxst5YdjZDJhhCOHJ(pSJhe=j
zil=a_AybCT2HQtRwnk>me+JuyBU>XQW`pgMBU>XArq0&RS$UYPodHv0bK`1cz9gR5
zu6HHD*=->DRYSteE}%-4$$?#oGCSZMDKd%5VT=V~(bdfc`WPw}X&i_MAjxP|M<Xn)
zXT~MXjOS`*jC*G7Rx|W;pB2)61rWt){f~2KtA9jfz4k{$xbjCte`?*Ye9Yr`1qS!R
zW!;WYV7xD?CA|6VGzj`(@clB>SMxM}>vyNI6Gr3K-XJl%vep<C+q+#wQo2kIupIYP
zK1z;)am>LwL2+rF;Mk|Elf2*wxi;H<iJR|!U+(sQ>)h7F#hDUkAnlKW>FmmfrZBv_
zpU;D-|NGVC{%;2Ae+MV(2P5?jQNM(7^29TH9ru~VFH8!Lf^T6k_&grrf}C9d-RScV
zFU5CVSV?0;n0fApBpf~-0T*<lP4aGD>8O<JQeJ9TU?^-+!l;M&p>~f^aYCX2Bw&g_
zkNvb-`%~+Fw&y?SCqFoy`CvNj!Red_(+Ll5XFHfrb#OY*f5CK;Lu$DX7G61ReNA6Y
zdqRzX?-&K@S+B^NR%0DkVvnuDX1h3DY@*`8S-@iuxg7Rp9zSH5A0cdzuAMgg8~nk9
zsCMwM%W`jhsh4?<OS`RQUB$4rgswG=#hPtxy;dQQFVO0XvkGUq9NSuoRSb6PuFW-9
zg|}K^ZLF>~f6;b}spf@LjmvVuw7pnr;ILR2H7|;qxGWYwI~G1oY)98Ojcc2V>G&e1
zzJOW7SuR<cmMb}rIeDM}S3Sx7d~!dR;s?fJ!)f3m@TCqCK_m6?+PoR4)VDuYyM1;T
zN4JgbHV*6<7v`G>CKx$)7w`=PyN>vmqj@V75R+n3e||-*-tLGRKs?!uG%zvw?Cl=k
z3Lf9XQ*f>@O;CF;Mt#eWgs=u=Vy5zT@TEc@Z|<zLt;r;(dZ`KFrqW;3<T3R<jgr<G
zWd}5Yf$FYTEz99)4CCn!uYH;WwNJcW)fpby0HYWVXQi*D|0z0cZ7I!a(i6#{B?~H$
z*(F=we;Lw<D<0p;riW0et!-6el@P9YZU<1AkDfZs&EVo<IL*D_;#xS_t#FD<;RJVr
ztt-LFjc~|?ptq9FU6NHA9~5Gq<so5b{BSTWX!%Gq^Mtaa)`FUU9p9<;#rtK~P5<H@
z^cUVW|8nWye`)>u7p;H)WtHOO7v?tkf=Nw&e{Hy3;6DHRwPBRqMgqSK>rCEB=cw77
zpa#u-`Q*dQ`Kjm}H@OTWnJ-G7u-u0P-R5hw-EC}74A78FBEPiRygXjVIp(u#6z*N!
zkj-RTT>;cCD-zn`yMznHp-hlUm<i!&6YjYlFxP#woUMbd?VQUusns3`l!IH-;RyFY
zf8?9e5>*mv&QX>}-<{Ekcid-a^`&ulAxd&zA%0^H{>Cm}Bd4(WQaM2(z%vBeozZtj
zNAqzfq~&8Ksd&u6NIa&sFSN@K>f{4G<p1PEcJ&1$g(wBqmu~F|gQRAhby;D0ypV0s
zdu8C&BHyPbCeO{Ad)SjJdMlp7y|C=gf5at5n5kgE9PCBKXWndI8OoAEh)E9GZ0i+v
z&2;8j`k<TsX92To-2%)TxFFzd+|q&FbY2UXt!}jsT@VP}HeP_b=bJFLdQn!WMYPmv
z;Ww}Q%!{bxQNzwg0swgov9>sjT={-uky9SQTyoZ%htqqol+lcia_9%jJx%Juf3D;b
zhswlBm?F`$PC)s@)=_aPOZ}(`5lo!z^JQ#2LZd=UUE(JlyHY>bf^xu0vYEABuZW|(
zx!aPiQI9sG`x89Dh))3Z&QHw<JLZ1&!4c-b2>YN2b3lZBFoZb}!afMX901`G{Lmfv
z;1cxE9q`~1?9d(P;1cA}9pK;+f85X=*kB*jU=C=2tEH78fP!cU0CtXsfK?R4nTUR{
zihMW|5fAk=|MD}dr48v!=5KdIz*#pwc}T;BMRq!VoB{~W1~;Sda!$a+7MKX&0D;!A
z9bIu9)-fHXc#b05?1e!G-FN)(b}YfE1h5J)Yf=E|HumvIIKC#9#}5&nf6w#a@6)6#
zjw{$=FG65eff<2khp0huipOh73vo@0!^QT{Y9hy|#YBafb&z>9aQJOwu0E|KF*+}3
zrXU`T-Y|(bd=`fWS^*Q`K`^wsgy9?t!GT$3x`KLivCSo>Zkx|cOrDl^x#Ps32Di%Q
zEaYcR2H@PDxY7d1#!?IOf68dVqSZ6+BfITvZTbGp@2#Hkl&Y0aAT6^Nl2to63ro7I
z3Lx-lnIFmn+yIkwqY$g4D3V>LkHtVV+Hd2WFZTBpmUHp_@U{<g&4oGcSXe;~cO%kf
zh?d@b9#iA#<Ql6M=!@FqBzdfLd2V$wt)RqY^n7&kRP$DHw9q5Df3!H^IN^{FG7AT>
znB2XcJTsE!>1;}9z>QiyoG+usG)K`{8Sn5oOON)8V-^*et+s1AQBNVlaXf2^Ohv2V
z<_AcXM(!meQ(xb7Zs-oQ@>hBZO$h=8dfv_KmFAq4%XZq;j*8PW&uQMjWi9)hiM>m;
zIpOOEOTCBG3axvqe-%WOgIn|7J+2_y1$EW~I_-iv^*~OCAWm}tr$g|jIdD@uw8ece
z(ocNR$0HEd&0qX2vP9ktuhs3Eit4MBBI^A#xf*ZoU`hxS^^A{TW^F!W2YDu_g^keo
zLe13m#IfBUD9TocB!+mrjz!~zpN*3heGDtR?9B&PVK5A?e*`Z+O&Hq}qBM(r9^@7V
zIz>Ch(-9U9AR?ahN#oi%5$y!aM5n-9|BeL`5F-0>AB^gSvYA$DY#>fdFuT-P-q%hn
zAWkeluLX-;*TosI_v-P!3-2x*4msfXg*xcqQk`=^T$r8EmWIpn{DlOzJT#JnNtRMX
zDzJ5GM#W(~e@9X<TCWoey7nQFg6PB)se-nVCACQ>l(?L}M#LRQut_@mbJ!%E@h~=`
zdv`8f$0=)E_OBdu#@S8hof$}lHiv_bh~0SF5tlsi{2NZ&I0UCoCF$*s#Swg5SR9Ze
z@b;(V2oBRxImA`Eb}U^-sBl@!b1^s($<hHC1a><te}YI3oESl*4h7=nQN?jOAb}V<
zPf6g?);Ya7nUt34y@|pu$2SphSxWXz;L{U96Ja|Wbeob?Irz{xwJDu55!t3wCYnZ0
zWukbqMZaNsWr1<Yu`JMCiI#=5TVi6)c{n>UN7yE#<b3svlw86k;T`8NXT7U&*`&U!
zan<wRe-W3<o**LY*ce1~)~x^~N3tE*?i3;<35z{Lgtx{PxOGQh{^I@}LD;d0r;A=F
zcNtiO@JJg_Y<Hm$o`l7I6fWTu3C&5m!l8-IDo~ktP?QHO^Si$silB%339#!^bOrqh
zI_u$Ch5r%q)EGb_I~oYc!M3qroU<MfCh(;Te_js_BfNFM7csP=z7&gfJvW251chx#
zmf&c{WhoYig4Cm;xJ=<ZG3tt<5p=HOc~@YJptFy35p1S#7vefKeuapeK`c!=rNl0<
zrDCl|w-C#JBgBOi9Ex)}q(&6P*3nMN8s2uIuysxoMZ-g_C=w?M%~wqnr+F`lu<pXF
ze^Uwill^+6q2=6b5qe@Nac|%MH5Rrx{x7Zia#GXMuZdPD#J#HL_DzW7u@UjTt>;xU
z;x|I5_uVdDxsWl5;e_FQ3O!69ObDZAzk`fq??;2VFuwL+5iOEJ1ZY{3fO(}b_p>0p
z9L$0%jN;TtcTw)bhvJ+HOcI?Xc4LVpe@mdTB<UiH@)ZmcZdH$z0?QN@`3IxRac|m(
zfusH^K-u<j<<fbg4uDVxiqv<veXSEkMzvGXWqyXlYQrKSksk^?noY*jxjtKaj$ap+
zyj=8a@cmLDO?g=k;zfQIWC<xuiMXH<Sa%F44EMi6dyyRj$Gg-K=O6&*(Q5>`e|Rz7
zO2i?uT>RN;r6We?G7_s+QexK1`?3NnqkRT_2kFa-ap`Y;urH=#LE$hJB3W%B#4k8Z
zg}FSR33C!P5q`;&G7ev&=XkwOc^BidK*rHbN7GW-x9MOWgx`8!gX{Yd@2a##v)6R*
zwoU;6xkmAQbYEMaKrWZpi&P|!e@xm7g&VOwM~raMXS}||8;2E6E{=oM_iw>at!=)?
zYg_jZ7yTJrUrVHuwOiS`bxZf%ZI<&cXE{G>vz&K(OXD5wjGts>G!A)HyRrN^Kf|?b
zyZviBooiA&z|N004;eJh$L+BoJUSwet}un-lr1u^aXd(?)Qyuv{6I+}f7J>PveZiZ
zK@0S$(P&%B<%V*#m$xlm?eL}jy^WCawtPL>+$DruuRsH@s@TIdSQ-yvHJ)*F<dnqL
z`G;MEnoGU&3`CM##i_#~SJZ$2BTu;E4-U4<NE~nVM~n84|0-|2H6A|6hDa6SNc)5t
zl-LFDTp<;*UVIoAreX&Yf1Uj$(C$a!k(y%%;wgH&WAPNLIvh{uustGA=V>04r}$1e
zE>AJr9h#?UJN4*1O{L=jdP?~z$LJ}&c8BRHZ6_V6r_|XVtfv%OAFrpBG!NO+$()bc
z(`k<%xK~r<bnISD&w<1Dlm?e0_!PVOAU?%f{-x$*cPO8xE%{5@f2<DZBmA}%YJZ5G
zOH;>+wyfabM_)L$9DWFf-cgT&alN(h=BfsS!k(KWnT8|{yw$4#VJ7s{&6dO4<b?57
zAzTfaP%~sKZN!6i4K6w5TgN8CG1M@qV&=EO^o}=*KU%bZ{8xEt_E)9Na4R=W{;G5u
znj)J1iJo#Mn)hSue?N#rzaw$zx7;R-hkkc%7RIyT1&|4#*f`7xc=R}NR9%Izi}D`Y
zCxaTRT{2RBZXoe^J|1C>a%VFS_-yRWIjl+I89A#lSh>DW2Q?p6;<+rEn$}DCQfWJZ
zka_bpEs}C+S|O!bhvRbVp_NwW^ssiRVO`V09#0ADk`A^ze-*6C<)%z??7_?%IJCL1
zmb^^@d31jToF8HK_KSU5?mujkwCqZFxJlBz_!vo=ap`+P-ofAAepS3}yW*?NjYvVL
z>$vaFe%xsRR{PDze`AU)pH8kt^df_qdGiR{B@c^OCF?cMB$j7efmpVKD>~9pfhz1R
z8J%q_HMI`8f8~TsXkw^IAV|~w5DGl675LJ<!0_A`|Mu7W%?1Xo98X!*&diPS7}^!4
zX^HYT9MqOsp2HBgdBdH8FsY5T8tX_X*jWb`47D<@wRWH{Xl0dF+<{(cWkRb~drIs5
z5FX_Ezxg0gH=q9P$NNp3Cs8UY@-cdjVZ4Y|yn)C5N^=Y-3L}e_&}Vn-g6gb>PfRKh
zFB}yxrGV8H=-aIBhfuuW#Nxrj{YecTJ*t}x6thb63-bOFC^=c=ukvV%vHN}uZD<K?
zi|3M)z$g}fhpzUb|D=ZhmkaJ$de_c`Q_Uq8Z<UI-%EarGh*#y|RcUx#vhY?(c&i+|
z``ru1+7?OrV4S3O@gRy3O7xtQZy0zx8;ow`#B`r8pw>4r7)~q8J`fR1BJMeUNWVNs
zx8)&^rM<JV?WeSNQMSF4Cpsowe3EYN$Zk*MNlr+ATmPf%e(Vpat~xA2d<|gsI+*_u
zhg8EPC|QGPDq6;Vm2{7}@(6hy!zAXbPBf#7o}Hugj2xsczEQJV)Yc<fcZRz7LCr2u
zH}7Y+<I~;edEDJ;?dfbfIju8{lUvilqiJ$xzGV4R@tD;z*2rtL=zqoM?cb!_#regB
zce3}B)F~W)+7eiCyZvHQbqjB4w!?X=%{WAOrr}wI|3Tanje92Uc@`&W&?y@4VawHO
z?)csrceIA+Y2_f}qS^thTu|c_axu-$(R)S?UYk5$XLQVmy&Jgg0e;6Quc9<8K6X4E
z#&i`l%=kaA!+9{H@x^PW2<uAU#`A+YoJ-PmCW*Zq<GSs$es84Q6#Ygs;ijH$)6T=K
LoZJ5oms2z@(!DBX

delta 10776
zcmV+zD(BUlRf$!QcYk-{I@0dFe}&iDx!AMUtLb!l&zv)JM}m{^HUSz)f8BT)Fo`E%
z)3(XiuRm2P$&zguB=(%O=A#4kJSEFQDyd3U7w6{}eo?Oey@?j_#%CY>hqpZYfd3Od
zCPkU$Z-0L*x0~OR)y28byo>YmPqy+GB>$(a{69$kAC~f;K7Wz?KP~0|6z%^%w(|cX
z`TuJv{|_PmFH8A<V*4Y1nQeFbGAffSjW&L<OyYDI`%${`_eGrhyErd)@v=;wV=LZ>
z)d-m&WI)J}km-ay|Ei{arfI)N?Gq*JMa!o&d)dURhi#meMZGn}W0sfeXtSYKocX=F
zv=^<CXaRbbVSl`dmvwOYuvve={|PtnDB?M!Jmd1c{-Af+n-8wSU>IC^(L<cBqB_e<
zmOnu=c2x^*f>FQcMVsAY6vh@BQIJ8W3@5j}Fc83Pw0yM1a#@1k^{#FO!_F4I6WECW
z{@TOKuvRXliQ>zBFsd3*M7A6tN%)!UxA(Oz79<J#^M9JKix}P>3@Q}#*IDi-DGas0
zFLBJ)N%=<~`2RL(1qs8C8IUke!ic1IOwGZDwA-P6Qg*F4+K8iVNaIEm;DZnFU&{s{
zymy%Xpn80fmhZQt1)QOGL`6p%GTDN4vWbhXc7PP{9Bob}8pDXJXQ9!HwmX}F2vf=3
z1clG7rGL*+Jls7dVQMkNwmSx*EJb8ExgCTfFG`al3%A)S-h_V~9U>^qxUk<F4QAu;
zZrl%s;U7SgZKF-LFZ?o((qadbG`ttTe2o27k|b>9m)TRajh_5%R4yOmmA`oNi#@Cn
zw2HtIP$b*^hA$9ZPxAaMn<133N*Rn22Fe&IV}C*!6Ux})jn$MfO<AvM`n=in{$Ma*
zeSa>Rey5r~t2KRAv3XGuezX|r1$@z)g&)0z=zE*Fb3t8?v*)Ggd6+*J*edAD#WpF5
zR`1c+$@giRqz~aTD&j(rA&hCT%Lb1JqZ;P)GRlt)3lwBr@G_XgoIdYO6*w&5ml4|x
z=zofa5u_puXIH&pz$q=3*E0?j;^96`N?YYI<I)@+-j4=zjl=CRh)H`6;*$@O?b8*!
z4z|c%{cT)6W~;`Kk2CmKT3Wg|6XKU`3ZQ)ri{#y|kwC>|FUQ}*+2AKMs$4E#?B<=z
z`PJ1oZ?R7{)b3TbL~;HBm+>$8ck4Xc`hP{X&zCR<E?OVel_~UZ{GSX(nH23J{IJVo
zXj{5}ZM8&wMQyrY?9+1p;Vwx_4Vx7mNce(q<JotAmf<8pFzEHpmY-2WLBvz$hoI&k
z5ard)kLlR!GEgLyE=7xzX#t~`MBj^_HvfpxM`D@cTs0O!ER9+J;{4*`key4U@_#eN
z#fkNsPC>LEu6tiv&yF9`^TR*9=HP0JHwK=C6{h3LXd!;D22%bdvCg9f%-#7RLeaTx
zGQHP3ySP62wn^G^vp=Pe{44y3SVBu1f?g8}qb*TE&z-R6WLnVoC(PtTbZkCX^!C%V
zVs1~?O}<mwdwAj&8XV?X!Q7f{1%H$6oGWO!IL*E!vCK9g1dDYTr*XJS*6V$j31FtI
z2pAABMQ}A94hOTrcoYVsAnXsWukZ0MquM;iV}bZor4n9OISpp>@ib^DTqp5nMK;qZ
z3OQU@uu9?eAQ<+^qG~JLZ@@Y$^JHh9d5>xYJd=1$<^2$>xA}B131%&wPk&%s?oLrg
zK&9pLB$!TG^e6XTv){};w#~MGWlR9vFedKCcb#Jbmg}W@vQu<c4Ezx_wUcRZrJhx2
zhE6CWdo?5uJvHy?1Yzk&!Ac?t=XILUWI|f7Nn28ohIhgIcHFPH)53)jr2D~W23tXa
z-=yg(cVHm-{%|zvPj!~kk$<HmmbuRIzKtFnNVs_a=Uwkc5X9j&dbKBr8HxwtUGKXj
z_yuNRvdEMD*7et?LB;Pc_;NoO4lbvI`@7mNFwXNV56jGj93c!L!E`#FhV!u`qj`3h
zgS8y4H!j^rQ!Ga^j-=UjG98TO;q|cU)O8;Ja%(Ljcw?`p!56Kq4}Z~i+d6qYM8p9s
z_HTN3cX$F@qj5DG1evfI1ZB-&AmW`X<xY@I>NKadZ&z#Iq~5;uX8(H9yXHv!UEf>}
z@4vU-^}}u-E|Q0BymeKu+cN?R{>goKIk>qC?sWRclN$f1H~hBU=w#<)ossxpqO7y0
zXt#4%CrJErZ!(eV#DCM91NzPX{6pY2(RQ(lU=ClrISdp+F+vS{cbENM*bgp$1O`^u
zL8x<!k*I5^4ac@8<PbBL=3Wqmc5NMEM5~ag(VC)gVFKy9-b^iouoQ%4vUO_BE8_@Q
zKf?Lou4+k!9<GyyIzjdE4)#<4!@V`=x4R_Fqx31v@>T4x@_z!3A&wF5ZZZg`z0v1z
zJnaWl!Ogb|`Gdot<~syL@J+$==10ZER~Z)~0tj2bqIuY4i)iD*BM_tTW;nj=4J)P`
z9f?j%0x^P)>JKy~bc7}@n~ju7$S9mmz+kPm6lqvK#xAxhKSc+?D4gF0mAwiyS)L^;
zx96)cKsKI^2Y-F-8DA3@CXgP5-v<(%rJE#;qulXFP~qqoFdC1BgHh0%>cc<Xhq1#?
zHQh51AKiyRpa`7D)V>;2_l;4t--X-@<wCY&1R32=LhdNl$eaf$u*qQxboGG>e6FJl
z=*0K}HhqNAq*j!%gOx<H8OP8xHk${NiZ8<>I9Fp^z(s_iJ(-TL2g9IdWba-bj?z$g
z@?9RJ{jvxC^1n#XJ}O|)?#n#dIF5H6N<;q3eQyRs{(e5~4fRov+wCZK?SFxyH-LMS
ztq2-_c|w(E6l>x-03=R~fa!SNn>SB79A@UimostUdTLOJbAwr^pBxmfMr9$)%2}uz
zmPPm;yETT(&%&STCtEy5yEt5Cg~JbmV;INGZhMm;yc*BWn|vQn;QOffJ~sI-PT;#x
zd>2i=PbctwQhc9ke8ovUSm=E?YxiPtQa=`ddQZ;UeOa8;n}yz=vv!XbC-rHe_v*~l
zuQ2zWz{*jQ6(-9D>nWTXqt2JCOBX5>pWP0w<>6le>y-08fIzeu%wTD&+x}(j;$z~{
z^Wbh$ZFTt49_}`o!-H`Q;}~uagp=V|KH`2=yluH7-0?9LkRJ8EKl^ca7tE(W^v897
zH?At%s$p84U|A`{s%clbn^l!n)iA2|yO$(g;h=p0Q^>IkIhGMt^y1{(VARJ!d;><2
z){)QgCR--uo9muY;>4cuYcL#N4dy>;d&YNrx_AF)H5A{&c)fOjG8F$A2G`d*f%C~a
z=aJ{?oUVSV?zZZ3X>G-QU&BwdC>_0j9Pev}DDrIlybkAJsp;Mfx5IHRO-JK@!T0Fu
zbv)VM=;CQS*~jSOT|C{d=;l#8!IyZ<i+F<n@R;ZDWS^mnxA3p{3Ee$}*>;N|@OaYT
z?~CXmwv5NqfsBAxEiR<rMR`)dk0o3C6hKr39~S;gQa<|Y2!8FwOC0Yoh6F=@>{r=t
zw}BZpkJp=cSz>S*{I!Z;dcjCX-s$^Y9vut3RN7g#X2PPVv@_JsYTEg20HK}Lv@_Js
zqc%Z1BkfnUhvVTi77y1y_;7Q4xEazL`|d5pl`~oTuoOR}S%LqA;k4hBLf;bKx4&B^
z#CSpnNfk_~U_u4;7+1kS1@9AoV=o+S<`uhxW=^gKyqTvxstD9wz^sD(x|F^6|KpiO
zoG$3%Lu4ri#Ay#N!gMc#8E^PiFjc((f(6|<!RsAmp27N+ayFRc%6+~NgX{N;^N;6$
zvw7Bvku?}ujgcWCe;(C@pwWbhp$VRLtp@u5<B<OoEwe=urOn`1Y+sRoZJy&?HBUhC
zU0^_T1-)w1{;&8BRHn;#SK{Y8__eLGd}|6d)B+s^0<}nlj5O@xLM<s?@u3Ew=Mcop
z%->}%abB37E&jEqzNwT70@O<cFn=&Xa8={KuJ|YXYh68j7{9{XO3*6;@1;G=<vCDG
zF{sm_a?~EAM%4wZDRH`gd=s-+mM>#}5p5#81$9`nM2hJZkxU}54ibZ2u&k3bDw}Vz
z9$<V1Je8og%(DV_*RaYh@TSi;%Aatql|Q*d*Rd3q=~(&O_pc6fd&{@wCQI=FirB}+
zk)Eo$qa}aD^lLf)c>D)TgbWE85>hYLFMV-BhJ5~&Xuu`vzN#93(5o5{G#cQEg$9E@
z+as77A(lE6=~vPO6yc)H0DBE5B>GCahQtXEch6-jEP2^zfQSdi>9zv&JD7A8|Kso8
zU_X;WvteOfN6Yws4rndST8V;H6rIgDrp+@rwavEx$aPKLYTyAo<2Z`^(?Xg&)7QN#
zFe5$d)7vu<=|#bRS+K#i(Ted{C`zGNunqPcLd2TEVeVmJhXcYexT|?LsEbF1f#JVl
zZ?D}4IzGV*jJnq2_XSIJHAnJtFKL<Yx7OFWBzXm7z*Qs<sW0xeT3vf32$PULG2GIh
zKv+hw)`7(x7faZn$;Alo&vl3J<BghH0KcSR8VxRaAXpE7>+g5y8wHI>bYa_VX!lah
z+6O0dVWSa-DU2|;h7B%{Lij94N+aBl{*J?_xi4$qHWH!?MF}5-J=l3s?4PyzTAZN3
zg6SC@zXeCa4231bq&MwpG_ZZPr@_6pq=9{QMPu6;rPdkqsxz{ebdyE3`#JJ6x?|9n
z64edx=pm1PV>DY7y8T_fK{d+X<X`FzxPl#2w|h*^S4Xdz!OS|j9h~=JGDc_N>eX^~
zC1ILh(ZSgNPBSd}3>`>NSdt7zlEn7(>`VldBEY`s?^@G;s-|1Vqw0~U@p>(8;~QdU
z>IPvYDxzkBI@F7khd6zXHv8Cp8dg|+CYENHk6wj;IFDdk6#EZ&LXLw6H%a>q&lrGK
z*FTS%eUgr8bWGAQMaOtr2Wiv!b4~e;R6cJi_jpVa?IEKa{%;d&tK2e!-b*mQK}j~^
zzmB(7@-fM$U2N6)7|;3;II8zV43*1DOb~4$4v0go!|)Ol=rfuV;&R_OW8@!6u1b=T
zWYENa*4Un-Ji+@}-MdenQAr0T4ljmIIzK+O1Tcl4lQ4|wq<oK$&PQCBNnuV9&L)HT
z&tU3R-RblF`HG*jweS0x`(FOZ2+L2&I5se_&iO6DDoQ*$ywM9PIZq2LCkvZmUmCp*
zvtImKwX2Fm=jOWv1P!K%_`*9W?A<2d-6_<6-4x^=mk-vP0+5wkf?$3lHw3j^zPaxj
z_EhcMKy}`CSoH@OjM*DjJRR%~CZthW-FOU+>VRgHcq+VK<nS?`LRY&ooO>dE)LNK-
zC+dpjZ=8iG7Hu1-u>>}{yme#@qmoxkVTj}9(o=3P9KW|ftj;SQ5o?Pb^lcgEHhb8A
z>%njiv&kCWxG%}7v`Er|vW#S}(Ovs((4XIWJWjvZQ+LWq;m}l}16T#X=zcc4pTch-
z@Na@K_o;h$#%E03&_1DrM^eHyAp9rtR|#xm;6=mIpRA5?X=n!jiI_w)j=nxf?zvn)
zX<t0SPxkQ3*}VBt@dPt5{8fmlx#JLjMnM>dFa^0*Y(38QMSkV2ONRsz>r!QixSp#N
z5f70MFYqDiT%sQ$MgliIA71JWLij1&CRxI^xv>oqA4(`c?vsKyy(`e_59v>!*=%AM
zIIt&OZla<9qlK?z37E|=+5Emt@@3>>vae1nNl-{_{14m=3qJBV5Fg`ojOPx2yJ>6Y
z?gWEo&*1`5^XicErJ+ODg&ZylHLnOcUk*BSE$CtS7?n2j)6LawZ|;FX&&`D9e3B~T
z!5`p1K{5-|w_}DCNHLIt`6V3v;Fz~&ET|cTVu<=N7<sixPV9hdQ(VVnW}X~1GYFnq
zh*YwMHOACmQe0eR5*lf3Ipq$2*74g{54P`-zs9GR>X85UXtjcQ=;9yjKT(RVtmf~t
zVcP(<a`15|)1dy%=WmCYy%Vm79lIEYo4tj#iN~d-k#{rg^)IEF*UaLfl6Y{t+nn30
z>efoc#(5%xs<|MatE5|mQ^1}%S<!M9Eef!emQB9)&XU5cDj-up&i_?^QTF6FLK#?w
zu#FVzz^2!<|GtCmv6Z`2M0qJHzHiXl15D&6<;}5E>a~`J=KE={8*ZyX^W@jeuOAEh
zH}J_*LS9{!4NB&b0^ak&tEc2LliFoF;kii^sFmuZ@zudZCk?LWXETv_rOq!ZbjVL8
z(~q>0ls#y@TbO&->hNBF<Iw_FWbQEHv3-+<_Q2puw!3|vlz0~l4`2SY`iU5t1on-h
zVm!HNN5eqrpsCbzy%5`d6;}QP@GWQX-k+1WaVK_{!%8n`NSOc1E8$y>VJtrMV1FN3
z<(xe8VdLM!9FqyIc2)pf1wCbvh_S30BXf9@H+aMaKdoMwZIfkxAr05rJ}G05oV8tB
z+`5aN@)K&Zg9g|WKQywa8)gM=73mwDO~^7&<~GDRxt-k5ut6#tZ&qec<Ug%uLPKAt
zuT3~Z__n6J)Mt-Qz1pT<S1iD7opMf6>O!rXsu$PjBwz1P5042>bO}~aeRpns?fXnz
z_O`x}b0#i#bAX+H2Y`$6^M4NIr~gm!o4?yHHev!U#OYmJ;7N{Q585y@0M2x{ILp)F
zpO0$ro?g!_pWyYJ+W-BWTK{I*RX;!!cj~5-L!%-tEshL7|G1eBWYDeab@=X!@TXmY
zx4ZnVZ?(n9*EibDo%JS3i>ElZHgSc#G;)W7(d=_Dm1Zt~ydjY}%kWg@nFSysWtMoP
z@l{9}v&8cN<?7Xz2_%uA|6SnP9<D=J?&cyq_jMr$_DvkG7SZy_xIgP+!#)x?S`U#I
zdnyR}m%Xdcv@UWD&v+UY;^raD(#@Nj8V=@8DTZK8*VpmzYY^f#Bpi>1Ka|49__Rj?
z<EH&cw}Ih*k>I~i)#X_i6$q@Z&sI9%zn?>SjkZ#f#~b^XOTtJt4Tj>?!c3H`_R+=|
z;&O<JU^32yNN0ooeQzj(T?9S94(sy#@-l4o=<-5r_0$FYZlgTOY#A$gWSd<Dquz8d
z=1k>@!=N+`gSlxKl*x%25|f5OTLZUXwh0dtmG|X;wNP(6+nMt)&cj2GIZrJjog2=>
zy1E-uH*2Z$Y!i>1QN9tkOe5wTBULCcIoh*4kxT5M!}%)Wm|P1w>aLT}!`vix;W2s^
z6OOV-X^e946-RyaT(X|D^POyyVyUl#_%|(rckr)xvx(9;+ZSA}`m3(0g5cY#gR+(3
zv~u@<#^e`5Q?}Z}yP|W;lTxqPBwZmHusdCx^Ae=F=kFwsa?rbHaygvC#U*=7J8z3a
z#+GKT7MCn7?ffh*nOWL7S)8)5nDVeVWMFCLUUAF1V$Qc>n`uSmSV<RAkrXELtNoiN
zS#ErdE_<`Vj2mB)AxZ5SKvpsgMqX+a`<7CF*xQIA-eiRXF=fagY7B++Ow|wM<RHIy
z@U6GPFfrV6O!#Z=H`g26XjT0oj#gEuxzkNl+6mu8ok6ro3`vZe4`zIh(5XTIc1?Gc
z0F<@PDvwmA%<`P1ojA9HKuej6-yXcgXr?%Ji4hTo=x{Tco(q(K?bzxrq>8QPNMp2r
zZ3ngyZL9E>KQu|vj=B|8r9)F{k+&M&F8WrHm?Cg>I;$vLovs~;tLR)h${3N$sq6w>
zIgJpNA+IQ570QNS5~Pr}3TPYFRuOcBwsFG4fn6P>7J*%evU3t6W8G0Ku@=r^3DzCP
zC}BAJGlTVHkNB<O4A2bJlRV<LCZpVcjMR;C{MKxbnXv|YEbdBL*Tv8>jpEK^bzKw&
z^C<2}QrAV%Fp*+YGPy2nW#S;p`Ul-IGcd>7M=RtWz8c-bb_l=Y0XCSJ$_C1XF&h<y
z<Al@kyiNiuN1i-8Q89v4gdte<gRewOhQi<ZPt?x(VbxFCuc7OFue&hC8=ww<l&?F+
zAx(}N@!ElLT~V!T9PJphgEU-R$JWSTx_00~X$@IplHMf;x(d?ds1bMmR6BVkqQOvO
zg&$<=?$kk20jT2*lwry}_0G&p;EZf_J?1_4VI38w#bV|TVf>!Lk3R(8$kw5!?H;vM
z#DQkM4pk4&Cn*A$iL0jMId++Ue^6ROHkrb8w$Brj$#aO2NtA(!Ymn#T(gZgh0-EPy
zc|cA`aU3Ym$EA5Ljs_c=%9AyfCQb7WO($7)Qd!%=lN!yIUZoUli}MrIA*`tgtdnzt
z3TJXt3Q&~(WkZ7bJMq)}F|*$5f-G%yr?+FZ)5XhcA;waKRt6G^^Uw=_7V%`7;rMGX
z4SRwrNu8*YR8b8^9aQ0kBN@BU>B0*lJdm%mgYjUdPLwa~x8==bn*_Hu>YGV63H~12
zD%X>13T*3IVJ8+P0gIOlIkqD$X9wPxkh8|~(TS&)h_l9X;lxu*z**z@<it};ys3B!
z#~v~z+-$IYbYyEJ+HA0YT{yBe5^OfuJ~^^A5^L&g?G%`Y+1d#;H8wY{Mj}n(iS1@r
z5}e%zVqP`m-|Paa%$pq8m3OlP-jQ*Ws2tW<5EfJ2Y@n~9;*iFHhyap|PIWZG(t2lH
z($09UcE)(!*6uVz&mLMK?N0zvoX-C^hj#i$MAm12M1&`QM5NAt{mREYj#prCFI>*;
z2nELbqB_Ex-%f*|9|qqqL;W;Q<F|fy8arV$ZtV>cvny+jQL(+-btGlq<N(WcPo=ly
zC|JiFtP>QM)(NhC$~wslp4)4)-IsXF?)T+x|F_PIPh6ZSaR$=<D45Q!d>9JDyZiY(
znEJn8P453@pnh<FqJA(^-w^dn7$;9WN!W3pS^UDJ@F@5e27}Mz5gy1jL+i}pv7^sF
zycFMcVI_?NVdlBlTsT~90S|PdP4aF&>8O<JQeJA;U}$Vn!m5X<rgo1}aYBv)Bw&g_
zj}Emu`%~wBw&f)BLK03TBuvF4oXSR+3P!k<iZB<6a4HXfVJZxfT3&dCS59|a(^u22
zQ6u0xMu&RVC$gr~SjUstW2dm$E>0Jls5nqscnl(!!`{r}HH&#gVuN(8c=2!W4<<yl
zI>s)?z4fDB<~bhiwvKfb!`c$M)-V=lwzczGg*<*hs~^rPoaJ$B>nK(+*qysJ&s-JW
z>V&m%y4pm4+a0Ew4^lNQ%LCK)VX1+`;$YN#C~D%eIQ;B5_%yK{J>N8*Z7QbYhnV^S
zW({X~WNA9C<UHm)gaTa6B=_^l{alJ4Sc?tC#YNyt9VCKA>g%=nx=^WKkgV<l?J%}(
z8{1te*fB25uN6!%n(i*(R||F>@h?XcR45?k*Q8W`jo7{25jB8#vRP?hWAfSCJ-!t@
zzK3V?Tw#Wx_AQP2r6LJo4amey<?Y~?3Uj=9veGUulbo8RCWM<xe^HaiH1{-GT4$6K
z&;%B$yIyrHhs7Pn(;r^DI0TJP{JiQjtN;P4m`hqdKve+5VnT(aNXq!of;!RVJbsT&
z506rR7u%}rC?R~}xz(yNSE)M9h2Y{oIL&q7;x;(hWpIkS-~?BJt((BPR@fmIfj&|?
z?@3nqcu<IWmNmuBcr7t4Q29s%^Mn$q)&iM-*(v(s{j!^ifALB93!i>}xy<3ev^o5X
zHi!SRN_6rIGn{<E)F!_+eC>DN<New&%5fuqfnSDoChw%uYc@sKVAwC8eApd76`gA%
zmtiFHMadJE`-w_FevP)fjctJe4ap?(OPkHh<26i+>9RR>zN;_fFqu}L0BV=PJjyTn
zF5!dXP@+gB%!Kf?3HMxU(sfs(vvtC?9dP+3wYvL&a`4r3IKsOR`KGi)m4upelx4Ml
zyfZ42$Nhp<zclU=L`m)s#NU{MPqE9N$SG`oshpq?;28q#%KDvAH9ziXw0z7Y6^}U>
ziO00|cXs(Yo&21Ke4L!fuD^h!5Us%e(k(h+nA8lgE=x;~39=1ruZ*}_bo<oA<hfT^
zJnXR*GZxSKURX|P;v+_wsbIjg?M20ZXTEk{8N`x8h)E8*Z0i+vLv`jkly_|Ung!Hu
zlnXE)=z@Tcb%(l;O=q=$+Ui#~(glIgZ(G``?(HU=t!|VRsu3+UTlmWBe)1wJd8Dwj
z(EvamH>@29BUirPSfr#!FqfS5=Hc`nENC>Zqa5aia!(t%uq)-np*C?6rbzUETolkg
zag9_Ib*WdX5CO#5K3~Sh3LF($>Jooa)s}i$3`!X*$!6Aiy&{hC=FLm`jApnQeLukh
zNGjE=m<*N2#gJCktwyOi7{aYCsW}kBtrn>{2*R!Ys5t<_wdQDd@Plie(eA(p*V>}p
zK@YC=M7skXTx*DS2Rpdc4K)XUI>4u;mGOXrXgmORj>dykbi|p6im<LodM2VF>Qw~f
z&#{(lq_b9lT?K-(ZhZ2Ph6{__cDz~x2+jsKqwsQ0z{D1q2;cyLPW4v1;y$cnK1}f*
zMYh=sV-TkL_~GqXic|?;6=2q+0Mc#jWA!<nGCYqTA}j^;;P2C<ERHLG*y1chU{-+{
zfoF%PL2-(eyrgxxro-c6d+4;0W7J`z!pu6zJX&P@wh>t0l9CveCYmXTM=O1_F$D}A
zT9gG$gb%?o>=LGPC`1Q#sObv&(Z#Npn7Um*GckEu0_Kk5L=A40)>+8Unhe0XJ@J$V
zkd0#+=9STcMXP5%S9bq@6t(01GrzZb#)4QYpFmn}E+ngNcovp)R~10u(=tDlNw@(f
z=|&?~Nl_%bP9KbcXtdwPId=y16_#`H`}4LBbIpZ0?pWAC4R<5bZHSTHd>+%_>Es%#
z5$KEF<Rp2lO?hs8GOeJ*Wb}-5@>F|Xa>URhxr{jBSmBTlGJ6Mqu^dY%P~(}AG*5$5
z!T@gc^5GmCHKsX=&dPX)l`}oMPmbAFWWL+3tw%le2*>ekD>9j_hMONCRT{Y$jkX2)
zrF6q|ptZl!OK3_lDA4n6X0J47y<D~vw{~=#p1V%-4lZl?>rCujs?8~5KUnHLq*iF%
zTb(|l9DFtJ-Q($hqg~KvJ>b(6>}fWJ^k7eiKu>d!r$d0JIk;1+3FE#X=>=u<H3@`u
zGZ_CCxh8Lh*Xrw<it3jsMbtZLay8!G!L$)5>KPxw%-Vd$4)RP;3p=6lD>YNs)6aJQ
zNKv+`$rxhw9*Y4Ce>Ms^`WSk4*_#ip!eAI&30{1fFt#OsL}?cLJP<Anbc%L*s3R;K
zKtw!Yl*YAlBH9U-iB5qP0~{M9AVl`%J{Z*-WwXW9*g%|^V5h0Eysw>DK%7{9UJDkx
z>5DVq4A$fG7k;~ND3!qR3so-RQdLVJF3fCbOT%S(?n44w)~MuQlBM*L3T&O$QE?c{
zRtiSz^JPJQ*RDq?h)ztjDrg(IR-1G}iA!-eBJQa0Ch6?Uyh%D^tv8~3cWzxr5jQUT
zS1PG-c2hYu1F6vFQ1yt|jiryc<cY;_IBlaMPMu29+ttVsd|X&m%Mp0{k~xCIR5ypX
zO4o^{s}Kv9wXCkeiAa{pY!KM3<OGo%s5?QV4h`ae?NQBfDziWgowXLYv~^~1P9~*g
zl5nE1%M?xoT$WOX6ZrIW(nQ$KDcz<dRStePPHjpCO+>cIn2Dy5k(nsoY|(F+npt36
z@-qu`SCVES?UvM-a~{rY%n`OpEID62lO>mMNs7lg%$f0OTsG<PYFzakdBo*%Z-~e`
zE)NlZo%JX{$&nlfwzr80Ny6e@5#g<|1zztFn7??(M-X;g^y#7(%3T%~Aw1F+6x*9B
zgePHfXN5~RMN4y%u8?V>vkGP=9u(z4&HUS64o%QQ1qImkDY}9N1)cTstilHgd1?$H
zksS>r<Y3!aGR|2KC=>Y71+Rye5#Bmrj2K#fQDch5x}TfDUxLCmq)Tu#<GK`!LqqCO
zRa~ZU-WYX7-v~O_^}H*XM$p+u#t1f3cnoo!8t+2H&7hYiol;^K2vf1vqhW~UzY!8c
z3J%4^98x11V(WA#Wev|eQP?`EiK5}DRuqX7h32y+iqkxpL|AuY)~N*j$-X_(&~or(
zwFo_Nl(@H_{~Cwe9RHV2eL1P==+{Im6ykl>bNeAg@;He2{nztq81XMc==a?&Ub&Dl
ziQ$Cdd<rv6AWR6OcfW&-Wba3VxiG%=U=b~nLIiYKl7M-oF!!?{yd2DeD~tfulm8<c
ze=HJiU5}Ik%M=#*2cyezZ`y~2qy8#D+4gbeGI^p7fY1br)OWXiZ4yOBb(_&;e}=^B
zQX?Ue9~wNGO~%u?zFT{aUl*3VT=Z-3{Zb)Kxmyn6MGhBa2`OZWxL^=iPYfsw-+zVi
zA}0opcj+U}K>*I9_Xu+FX1cYALu9-7f3wwEM~u#GBv!4Z#H_XVWd&A7yC{7J>C1|7
z>2H0oFQ#Kb;jk4VS#2Z4KXBLzb9ufK<|Jw({E{bS9KJ-)@p_-~DaPf1jH8*3rlYcN
z)4@ClzxBQb*Y_hnRcVK2uj$_HoB{yyjN<#~zIHx=TrRH{sYo7~v=<6r#P%F9f5OF_
z@%j>P98Ng7I4)M-zXd~ew)q~fZQVay^k;B=Es;*vZe{D%E!}swUCz7Q<@~Jea^CGN
zjd!#&ev*~ZC>5)2bNO>#3ASvz{%g0PYf?PO&W|<^84S+H?Xf^SDzrzRFooijEi$iB
zR;1PHM#T|7P?AWs!g82eYd>hge?B!D?b^A#bgu6Ew#BPkz;p+=5rW>9uSci5gq-Ug
zXy8>Hd$<QnV>wr2eWW9`7F$&my9hOxdS@j?l3c~9LxC(BK!B0evG{|7tuhj&vHob$
z{_$Vst&hgT6>x}DA&!hs*g=V#^3EMnA?wYDbzv%QFHzkvfp#yWM{150f74U+b|v)`
zt17IgbJ&*G(|MXj_7vYKrS=rFUBNv~+o@&uG?k9U_muKeO7JPYc7^zqwv)>7DRs6*
z`IJKI(tJuuvp}Ct=3J&vr#)V*ucpeWWM56sfx>-CgG>27#cnR*r&!CsG@R@T`f1vd
zzogBoxF6xSt#JE8>|B~Ae^#_*1qUyW;W%=5p$vVZ9tGq2XyL<EEeM4@H%BrJNgDX5
zR|~>S=&746hp*KM<E=ut8Zx0~$XMEl2kja>a>}=kLxf{!U{J@*Z-eO_9~6JIX#e=H
z^3v|FO1<IMZrc1+DLFJnwEYt^<xC9k$Jl=mrNbjpI$T~c#?s-Pe;19h!n^=70Th>x
z83B(LB}dg&7`tfip}R7uvAQWE<>v+xkLT<W)+l#2^MKFB{hY&^B%YD88UvQ=cXd$n
zQ6-+sp{eP-lpmG0lMHo)CG$g4E=?z-wCiv@Zas9;>YPH>E`6+P>e%CHV_j0lcBhL~
z`QDUijx(6~5{I_;f7KGaNg$8#uYmI-%-(*nPs{y>ZIYH<Nf9?mx)(o2l4e}`o{)F&
zZ*RXU-nL!wRpvpYAT)K{_h&!uv;eF9=HtIHjh0VUZxOx7U}xSef4k&i5vydq=Gn&b
zY%37Uc5p>U5-d=Kvn8XtxKdNAKrSa_LK8zx0zsPYhtS}8f33ln?hS_LzWBGl-fuRr
zXysU)Rjaof<uQyaO!E@uZ@8!}vpk0-Zu5q>1z}SgYdzMHbg;7zE*NTMTx+cuFlc3!
zR=lxZX=OsI)_Y3p{SY4H`oH-g&^Mp{?Z^8~oF`E#I`T1kj$yrsR(ycR{&Nf{3L}e_
zFlTq%gzD^uJ5Nk15HB1RFr|Ri73f#3?uXF4;Kb&^!~IDE9zCj?4K%Y#1q|~35-2%Y
z<gfB*i?RED3}a{sV~gjTlhG&^f2*$cqW`3U|Cbx?S$fybgj3BWUvHJJx60P*l&n|f
z>Q$+FT{87niF&I%z5Cq@#@ZH1`e59ocJUyJ5lYOQlW!P!I~$B{<i>QLFQC^qF&IuO
z%Q+AcOd{?%en@|Lj&93C9!q;?W!q0_@1ksbCr@-ty7(mB+>za$$djCqf42TdIsMod
zx2`5ELVOKi_d1yW5XG%w6O^pMG!-Lbze>8-Tv>iz$1sWcsuRuVL(k4pdPWXX7vHGa
zEo$o#tvf?q{GetRsGIk*+wtk{^E~eEwDxp1ot)NL$jPng;L$WWGhed&sd&t48E)if
zbm)J@_wC=L+{O9Dg?F;|ljSKKf5sA6al8FuQ%wtRX|}_CtIaw@c&6c5h5td^6ODT&
zzVqJgZq!n>jrXwSZtW0f+}RqUx0Qp82Wtng@=%Ra$OAPyXYUy~d2RE9ol!{;dv|c#
z6a0?RUPWm*gzR`ijO{9Dx$%Eqhx1@Y>x|b<E!Np+%q!+l!=$TziM<268tuD&Z=~)N
W^G7prr=GUc&eN@&-2V?Fs%qd&W;<2@

diff --git a/docs/prgen.html b/docs/prgen.html
index 77e6420..84859aa 100644
--- a/docs/prgen.html
+++ b/docs/prgen.html
@@ -51,8 +51,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/rotation.html b/docs/rotation.html
index f8a8ab9..e4033d4 100644
--- a/docs/rotation.html
+++ b/docs/rotation.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/search.html b/docs/search.html
index 0d59e2b..38c6394 100644
--- a/docs/search.html
+++ b/docs/search.html
@@ -6,7 +6,7 @@
   <title>Search &mdash; GACODE</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=19f00094" />
-      <link rel="stylesheet" type="text/css" href="_static/contentui.css?v=4cf5b151" />
+      <link rel="stylesheet" type="text/css" href="_static/contentui.css" />
 
   
     <link rel="shortcut icon" href="_static/favicon.ico"/>
@@ -20,7 +20,7 @@
         <script src="_static/documentation_options.js?v=5929fcd5"></script>
         <script src="_static/doctools.js?v=9a2dae69"></script>
         <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="_static/contentui.js?v=9ee86694"></script>
+        <script src="_static/contentui.js"></script>
     <script src="_static/js/theme.js"></script>
     <script src="_static/searchtools.js"></script>
     <script src="_static/language_data.js"></script>
@@ -51,8 +51,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/searchindex.js b/docs/searchindex.js
index 692d73f..8b1140e 100644
--- a/docs/searchindex.js
+++ b/docs/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"alltitles": {"2002": [[13, "id20"]], "2003": [[13, "id22"]], "2004": [[13, "id25"]], "2005": [[13, "id33"]], "2006": [[13, "id40"]], "2007": [[13, "id49"]], "2008": [[13, "id59"]], "2009": [[13, "id63"]], "A Computational Science and User Perspective": [[13, "a-computational-science-and-user-perspective"]], "ADIABATIC_ELEC": [[30, "adiabatic-elec"]], "AGENDA": [[41, "agenda"]], "ALPHA_E": [[30, "alpha-e"]], "ALPHA_MACH": [[30, "alpha-mach"]], "ALPHA_P": [[30, "alpha-p"]], "ALPHA_QUENCH": [[30, "alpha-quench"]], "ALPHA_SA": [[30, "alpha-sa"]], "ALPHA_ZF": [[30, "alpha-zf"]], "AMP": [[5, "amp"]], "AMP0": [[5, "amp0"]], "AMP_PHI_N": [[14, "amp-phi-n"]], "ANISO_MODEL_*": [[22, "aniso-model"]], "AS_1": [[30, "as-1"]], "Acknowledgments": [[28, "acknowledgments"]], "Advanced shape parameters": [[6, "id2"]], "Alphabetical list for input.cgyro": [[5, "alphabetical-list-for-input-cgyro"]], "Alphabetical list for input.gyro": [[14, "alphabetical-list-for-input-gyro"]], "Alphabetical list for input.neo": [[22, "alphabetical-list-for-input-neo"]], "Alphabetical list for input.tglf": [[30, "alphabetical-list-for-input-tglf"]], "Alphabetical list for out.tglf files": [[31, "alphabetical-list-for-out-tglf-files"]], "Anomalous Transport in the DIII-D Tokamak Matched by Supercomputer Simulation": [[16, "anomalous-transport-in-the-diii-d-tokamak-matched-by-supercomputer-simulation"]], "Appropriate References": [[9, "id6"], [42, "id144"]], "BETAE": [[30, "betae"]], "BETAE_UNIT": [[5, "betae-unit"]], "BETAE_UNIT_SCALE": [[5, "betae-unit-scale"]], "BETA_STAR": [[22, "beta-star"]], "BETA_STAR_SCALE": [[5, "beta-star-scale"]], "BOX_SIZE": [[5, "box-size"]], "BTCCW": [[5, "btccw"], [22, "btccw"]], "B_MODEL_SA": [[30, "b-model-sa"]], "Batch submission": [[8, "batch-submission"]], "Bounding-box method": [[10, "bounding-box-method"]], "Build from sources": [[0, "build-from-sources"]], "Building": [[0, "building"]], "CGYRO": [[3, "cgyro"]], "CGYRO Normalization": [[3, "id7"]], "CGYRO Workshop 2022": [[41, "cgyro-workshop-2022"]], "CGYRO output files": [[7, "cgyro-output-files"]], "COLLISION_ENE_DIFFUSION": [[5, "collision-ene-diffusion"]], "COLLISION_ENE_RESTORE": [[5, "collision-ene-restore"]], "COLLISION_FIELD_MODEL": [[5, "collision-field-model"]], "COLLISION_FULL_STRIPES": [[5, "collision-full-stripes"]], "COLLISION_KPERP": [[5, "collision-kperp"]], "COLLISION_MODEL": [[5, "collision-model"], [22, "collision-model"]], "COLLISION_MOM_RESTORE": [[5, "collision-mom-restore"]], "COLLISION_PRECISION_MODE": [[5, "collision-precision-mode"]], "Change-at-your-own-risk parameters": [[32, "id6"]], "Codes": [[17, null]], "Collisions": [[6, "id9"]], "Command-line usage": [[8, "command-line-usage"]], "Common time-dependent output": [[7, "id2"]], "Comparison of GYRO simulations with fast-sweeping and Doppler reflectometer data in Tore Supra": [[16, "comparison-of-gyro-simulations-with-fast-sweeping-and-doppler-reflectometer-data-in-tore-supra"]], "Comparison of GYRO synthetic diagnostic results with C-Mod PCI data": [[16, "comparison-of-gyro-synthetic-diagnostic-results-with-c-mod-pci-data"]], "Comparison of GYRO synthetic diagnostic results with DIII-D BES and CER data": [[16, "comparison-of-gyro-synthetic-diagnostic-results-with-diii-d-bes-and-cer-data"]], "Compressional Electromagnetic Perturbations (2010)": [[16, "compressional-electromagnetic-perturbations-2010"]], "Computation of the Jacobian": [[38, "computation-of-the-jacobian"]], "Concept of platform files": [[0, "concept-of-platform-files"]], "Connection of Fluxes to Powers": [[34, "connection-of-fluxes-to-powers"]], "Connection to experimental data": [[26, "connection-to-experimental-data"]], "Consistency with force balance": [[26, "consistency-with-force-balance"]], "Control": [[32, "id1"]], "Control parameters": [[6, "id3"], [15, "id1"]], "Coordinates": [[10, "coordinates"]], "Cross-code benchmarking results": [[28, "cross-code-benchmarking-results"]], "Cyclone Base Case with Adiabatic Electrons (2001)": [[16, "cyclone-base-case-with-adiabatic-electrons-2001"]], "DEBYE": [[30, "debye"]], "DEBYE_FACTOR": [[30, "debye-factor"]], "DELTA": [[5, "delta"], [22, "delta"]], "DELTA_LOC": [[30, "delta-loc"]], "DELTA_T": [[5, "delta-t"]], "DELTA_T_METHOD": [[5, "delta-t-method"]], "DENS_*": [[5, "dens"], [22, "dens"]], "DIII-D L-mode shortfall": [[28, "diii-d-l-mode-shortfall"]], "DLNNDRE_ADE": [[22, "dlnndre-ade"]], "DLNNDR_*": [[5, "dlnndr"], [22, "dlnndr"]], "DLNTDRE_ADE": [[22, "dlntdre-ade"]], "DLNTDR_*": [[5, "dlntdr"], [22, "dlntdr"]], "DLNTDR_PARA_*": [[22, "dlntdr-para"]], "DLNTDR_PERP_*": [[22, "dlntdr-perp"]], "DPHI0DR": [[22, "dphi0dr"]], "DRMAJDX_LOC": [[30, "drmajdx-loc"]], "DRMINDX_LOC": [[30, "drmindx-loc"]], "DZMAG": [[5, "dzmag"]], "DZMAJDX_LOC": [[30, "dzmajdx-loc"]], "Data input": [[3, "data-input"], [21, "data-input"], [33, "data-input"]], "Data output": [[21, "data-output"]], "Data output and plotting": [[3, "data-output-and-plotting"]], "Data output, python interface, and plotting": [[33, "data-output-python-interface-and-plotting"]], "Density Transport": [[34, "density-transport"]], "Density fluxes and sources": [[34, "id2"]], "Design History": [[13, "design-history"]], "Detailed description of NEO output files": [[24, "detailed-description-of-neo-output-files"]], "Download and user agreement": [[9, "download-and-user-agreement"]], "EPAR0": [[22, "epar0"]], "EPAR0_SPITZER": [[22, "epar0-spitzer"]], "EQUILIBRIUM_MODEL": [[5, "equilibrium-model"], [22, "equilibrium-model"]], "ERROR_TOL": [[5, "error-tol"]], "ETG_FACTOR": [[30, "etg-factor"]], "EXPERIMENTAL profiles": [[28, "experimental-profiles"]], "E_MAX": [[5, "e-max"]], "Effective field": [[10, "effective-field"]], "Electron Temperature Gradient Turbulence (2006)": [[16, "electron-temperature-gradient-turbulence-2006"]], "Energetic particle transport coefficients (2009)": [[16, "energetic-particle-transport-coefficients-2009"]], "Energy Transport": [[34, "energy-transport"]], "Energy fluxes and sources": [[34, "id3"]], "Environment setup": [[27, "environment-setup"]], "Environment variables": [[0, "environment-variables"]], "Equations solved in TGYRO": [[34, "equations-solved-in-tgyro"]], "Equilibria": [[10, "equilibria"]], "Equilibrium and Profiles": [[17, "equilibrium-and-profiles"]], "Experimental profiles output files": [[24, "experimental-profiles-output-files"]], "Extra subroutine interface parameters": [[23, "extra-subroutine-interface-parameters"]], "FAQ": [[4, "faq"]], "FIELD_PRINT_FLAG": [[5, "field-print-flag"]], "FILTER": [[30, "filter"]], "FIND_WIDTH": [[30, "find-width"]], "FLUX-SURFACE GEOMETRY": [[10, "flux-surface-geometry"]], "FREQ_TOL": [[5, "freq-tol"]], "FT_MODEL_SA": [[30, "ft-model-sa"]], "Fields": [[6, "id4"]], "File structure": [[18, "id3"]], "Formulation": [[38, "formulation"]], "Formulation on a discrete grid": [[38, "formulation-on-a-discrete-grid"]], "Frequently Asked Questions": [[3, "frequently-asked-questions"]], "GA OMEGA": [[27, "ga-omega"]], "GACODE License": [[19, "gacode-license"]], "GAMMA_E": [[5, "gamma-e"]], "GAMMA_E_SCALE": [[5, "gamma-e-scale"]], "GAMMA_P": [[5, "gamma-p"]], "GAMMA_P_SCALE": [[5, "gamma-p-scale"]], "GCHAT": [[30, "gchat"]], "GEOMETRY_FLAG": [[30, "geometry-flag"]], "GEO_NY": [[22, "geo-ny"]], "GEO_YIN": [[22, "geo-yin"]], "GFLUX_PRINT_FLAG": [[5, "gflux-print-flag"]], "GHAT": [[30, "ghat"]], "GKW results (added 25-jan-2013)": [[28, "gkw-results-added-25-jan-2013"]], "GPU_BIGMEM_FLAG": [[5, "gpu-bigmem-flag"]], "GRADB_FACTOR": [[30, "gradb-factor"]], "GYRO": [[11, "gyro"]], "GYRO Validation Abstracts": [[16, "gyro-validation-abstracts"]], "GYRO results": [[28, "gyro-results"]], "GYRO verification and validation (pre 2010)": [[16, "gyro-verification-and-validation-pre-2010"]], "Gallery of classic GYRO images (circa 2003)": [[12, "gallery-of-classic-gyro-images-circa-2003"]], "Gaussian width parameters": [[32, "id3"]], "General models": [[23, "id3"]], "Geometry": [[17, "geometry"]], "Global-spectral parameters": [[6, "id11"]], "Gyrokinetic Simulation in the 2000s": [[13, "gyrokinetic-simulation-in-the-2000s"]], "Gyrokinetic Simulation of Impurities (2004)": [[16, "gyrokinetic-simulation-of-impurities-2004"]], "H_PRINT_FLAG": [[5, "h-print-flag"]], "High-level control": [[40, "id1"]], "History and Overview": [[25, "history-and-overview"]], "IBRANCH": [[30, "ibranch"]], "IFLUX": [[30, "iflux"]], "IPCCW": [[5, "ipccw"], [22, "ipccw"]], "Input parameters": [[26, "input-parameters"]], "Iteration control": [[40, "id2"]], "KAPPA": [[5, "kappa"], [22, "kappa"]], "KAPPA_LOC": [[30, "kappa-loc"]], "KX0_LOC": [[30, "kx0-loc"]], "KY": [[5, "ky"], [30, "ky"]], "KYGRID_MODEL": [[30, "kygrid-model"]], "Key publications and presentations": [[28, "key-publications-and-presentations"]], "LAMBDA_DEBYE": [[5, "lambda-debye"]], "LAMBDA_DEBYE_SCALE": [[5, "lambda-debye-scale"]], "LINSKER_FACTOR": [[30, "linsker-factor"]], "LOC_BETAE_SCALE": [[39, "loc-betae-scale"]], "LOC_DX": [[39, "loc-dx"]], "LOC_DX_MAX": [[39, "loc-dx-max"]], "LOC_ER_FEEDBACK_FLAG": [[39, "loc-er-feedback-flag"]], "LOC_EVOLVE_GRAD_ONLY_FLAG": [[39, "loc-evolve-grad-only-flag"]], "LOC_HE_FEEDBACK_FLAG": [[39, "loc-he-feedback-flag"]], "LOC_LOCK_PROFILE_FLAG": [[39, "loc-lock-profile-flag"]], "LOC_RELAX": [[39, "loc-relax"]], "LOC_RESIDUAL_METHOD": [[39, "loc-residual-method"]], "LOC_RESTART_FLAG": [[39, "loc-restart-flag"]], "LOC_SCENARIO": [[39, "loc-scenario"]], "LOC_TE_FEEDBACK_FLAG": [[39, "loc-te-feedback-flag"]], "LOC_TI_FEEDBACK_FLAG": [[39, "loc-ti-feedback-flag"]], "Local limit of Global Simulations (2004)": [[16, "local-limit-of-global-simulations-2004"]], "MACH": [[5, "mach"]], "MACH_SCALE": [[5, "mach-scale"]], "MASS_*": [[5, "mass"], [22, "mass"]], "MASS_1": [[30, "mass-1"]], "MAX_TIME": [[5, "max-time"]], "MOMENT_PRINT_FLAG": [[5, "moment-print-flag"]], "MPI_RANK_ORDER": [[5, "mpi-rank-order"]], "Magnetic field orientation": [[10, "magnetic-field-orientation"]], "Miller geometry parameters": [[32, "id4"]], "Miscellaneous": [[20, "miscellaneous"]], "Momentum Transport": [[34, "momentum-transport"]], "Momentum fluxes and sources": [[34, "id4"]], "NBASIS_MAX": [[30, "nbasis-max"]], "NBASIS_MIN": [[30, "nbasis-min"]], "NEO": [[21, "neo"]], "NEO Output Files": [[24, "neo-output-files"]], "NERSC PERLMUTTER (CPU)": [[27, "nersc-perlmutter-cpu"]], "NERSC PERLMUTTER (GPU)": [[27, "nersc-perlmutter-gpu"]], "NEW_EIKONAL": [[30, "new-eikonal"]], "NE_ADE": [[22, "ne-ade"]], "NKY": [[30, "nky"]], "NMODES": [[30, "nmodes"]], "NONLINEAR_FLAG": [[5, "nonlinear-flag"]], "NS": [[30, "ns"]], "NUP_ALPHA": [[5, "nup-alpha"]], "NUP_RADIAL": [[5, "nup-radial"]], "NUP_THETA": [[5, "nup-theta"]], "NU_1": [[22, "nu-1"]], "NU_EE": [[5, "nu-ee"]], "NU_GLOBAL": [[5, "nu-global"]], "NWIDTH": [[30, "nwidth"]], "NXGRID": [[30, "nxgrid"]], "N_ENERGY": [[5, "n-energy"], [22, "n-energy"]], "N_FIELD": [[5, "n-field"]], "N_GLOBAL": [[5, "n-global"]], "N_RADIAL": [[5, "n-radial"], [22, "n-radial"]], "N_SPECIES": [[5, "n-species"], [22, "n-species"]], "N_THETA": [[5, "n-theta"], [22, "n-theta"]], "N_TOROIDAL": [[5, "n-toroidal"]], "N_XI": [[5, "n-xi"], [22, "n-xi"]], "Nonaxisymmetric effects": [[23, "id6"]], "Normalization": [[3, "normalization"], [21, "normalization"]], "Numerical Dissipation": [[6, "id6"]], "Numerical Resolution": [[6, "id5"]], "Numerical resolution": [[23, "id1"]], "OMEGA_ROT": [[22, "omega-rot"]], "OMEGA_ROT_DERIV": [[22, "omega-rot-deriv"]], "OSX Sonoma": [[2, "osx-sonoma"]], "OUTPUT": [[35, "output"]], "OpenBLAS": [[0, "openblas"]], "Output Normalization": [[7, "output-normalization"]], "Output file control": [[6, "id12"]], "Overview": [[3, "overview"], [11, "overview"], [18, "overview"], [28, "overview"], [29, "overview"], [33, "overview"]], "PARK": [[30, "park"]], "PLASMA ROTATION THEORY": [[26, "plasma-rotation-theory"]], "PLOT": [[36, "plot"]], "PRINT_STEP": [[5, "print-step"]], "PROFILE_DLNNDR_*_SCALE": [[22, "profile-dlnndr-scale"]], "PROFILE_DLNTDR_*_SCALE": [[22, "profile-dlntdr-scale"]], "PROFILE_EQUILIBRIUM_MODEL": [[22, "profile-equilibrium-model"]], "PROFILE_ERAD0_MODEL": [[22, "profile-erad0-model"]], "PROFILE_MODEL": [[5, "profile-model"], [22, "profile-model"]], "PX0": [[5, "px0"]], "P_PRIME_LOC": [[30, "p-prime-loc"]], "Parameters for input.neo": [[23, "parameters-for-input-neo"]], "Physical considerations": [[26, "physical-considerations"]], "Physics": [[17, null]], "Physics Control": [[40, "id4"]], "Plasma Rotation": [[17, "plasma-rotation"]], "Plasma equilibrium/geometry": [[23, "id2"]], "Plasma shape/geometry": [[6, "id1"]], "Prehistory": [[13, "prehistory"]], "Prerequisites": [[0, "prerequisites"]], "Profile Feedback Control": [[40, "id3"]], "Profile models": [[23, "id4"]], "Q": [[5, "q"], [22, "q"]], "QL_flux_spectrum": [[31, "ql-flux-spectrum"]], "QUASINEUTRAL_FLAG": [[5, "quasineutral-flag"]], "Q_LOC": [[30, "q-loc"]], "Q_PRIME_LOC": [[30, "q-prime-loc"]], "Q_SA": [[30, "q-sa"]], "Quick links": [[11, "quick-links"], [21, "quick-links"], [29, "quick-links"], [33, "quick-links"]], "Quick-start example": [[8, "quick-start-example"]], "RESTART_STEP": [[5, "restart-step"]], "RHO_STAR": [[22, "rho-star"]], "RLNS_1": [[30, "rlns-1"]], "RLTS_1": [[30, "rlts-1"]], "RMAJ": [[5, "rmaj"]], "RMAJ_LOC": [[30, "rmaj-loc"]], "RMAJ_OVER_A": [[22, "rmaj-over-a"]], "RMAJ_SA": [[30, "rmaj-sa"]], "RMIN": [[5, "rmin"]], "RMIN_LOC": [[30, "rmin-loc"]], "RMIN_OVER_A": [[22, "rmin-over-a"]], "RMIN_OVER_A_2": [[22, "rmin-over-a-2"]], "RMIN_SA": [[30, "rmin-sa"]], "ROTATION_MODEL": [[5, "rotation-model"], [22, "rotation-model"]], "References": [[42, "references"]], "References: TGLF saturation models": [[29, "id9"]], "References: TGLF validation against experimental data": [[29, "id10"]], "Repository access": [[9, "repository-access"]], "Restart data": [[7, "id3"]], "Rotation output files": [[24, "rotation-output-files"]], "Rotation physics": [[6, "id10"], [23, "id5"]], "Running Cases": [[3, "running-cases"], [8, "running-cases"]], "Running GACODE": [[17, "running-gacode"]], "S": [[5, "s"]], "SAT_RULE": [[30, "sat-rule"]], "SHAPE_COS0": [[5, "shape-cos0"], [22, "shape-cos0"]], "SHAPE_COS1": [[5, "shape-cos1"], [22, "shape-cos1"]], "SHAPE_COS2": [[5, "shape-cos2"], [22, "shape-cos2"]], "SHAPE_COS3": [[5, "shape-cos3"], [22, "shape-cos3"]], "SHAPE_SIN3": [[5, "shape-sin3"], [22, "shape-sin3"]], "SHAPE_S_COS0": [[5, "shape-s-cos0"], [22, "shape-s-cos0"]], "SHAPE_S_COS1": [[5, "shape-s-cos1"], [22, "shape-s-cos1"]], "SHAPE_S_COS2": [[5, "shape-s-cos2"], [22, "shape-s-cos2"]], "SHAPE_S_COS3": [[5, "shape-s-cos3"], [22, "shape-s-cos3"]], "SHAPE_S_SIN3": [[5, "shape-s-sin3"], [22, "shape-s-sin3"]], "SHAT_SA": [[30, "shat-sa"]], "SHEAR": [[22, "shear"]], "SHIFT": [[5, "shift"], [22, "shift"]], "SIGN_BT": [[30, "sign-bt"]], "SIGN_IT": [[30, "sign-it"]], "SILENT_FLAG": [[5, "silent-flag"], [22, "silent-flag"]], "SIM_MODEL": [[22, "sim-model"]], "SPITZER_MODEL": [[22, "spitzer-model"]], "S_DELTA": [[5, "s-delta"], [22, "s-delta"]], "S_DELTA_LOC": [[30, "s-delta-loc"]], "S_KAPPA": [[5, "s-kappa"], [22, "s-kappa"]], "S_KAPPA_LOC": [[30, "s-kappa-loc"]], "S_ZETA": [[5, "s-zeta"], [22, "s-zeta"]], "S_ZETA_LOC": [[30, "s-zeta-loc"]], "S_ZMAG": [[22, "s-zmag"]], "Scenarios and connection to energy sources": [[37, "scenarios-and-connection-to-energy-sources"]], "Software": [[17, null]], "Solution strategy": [[38, "solution-strategy"]], "Some comments regarding units": [[38, "some-comments-regarding-units"]], "Sonic rotation formalism": [[26, "sonic-rotation-formalism"]], "Source Code": [[3, "source-code"]], "Source code": [[0, "source-code"], [9, "source-code"]], "Species Parameters": [[40, "id5"]], "Species Vectors": [[32, "id2"]], "Species-dependent parameters": [[23, "id7"]], "Species-related parameters": [[6, "id8"]], "Standard output files": [[24, "standard-output-files"]], "Subroutine output": [[24, "subroutine-output"]], "TAUS_1": [[30, "taus-1"]], "TEMP_*": [[5, "temp"], [22, "temp"]], "TEMP_PARA_*": [[22, "temp-para"]], "TEMP_PERP_*": [[22, "temp-perp"]], "TE_ADE": [[22, "te-ade"]], "TGLF": [[29, "tglf"]], "TGLF output files": [[32, "id8"]], "TGLF output parameters": [[32, "id7"]], "TGYRO": [[33, "tgyro"]], "TGYRO solver algorithm": [[38, "tgyro-solver-algorithm"]], "TGYRO_DEN_METHOD*": [[39, "tgyro-den-method"]], "TGYRO_ITERATION_METHOD": [[39, "tgyro-iteration-method"]], "TGYRO_MODE": [[39, "tgyro-mode"]], "TGYRO_NEO_METHOD": [[39, "tgyro-neo-method"]], "TGYRO_RELAX_ITERATIONS": [[39, "tgyro-relax-iterations"]], "TGYRO_THERM_FLAG*": [[39, "tgyro-therm-flag"]], "TGYRO_WRITE_PROFILES_FLAG": [[39, "tgyro-write-profiles-flag"]], "THETA0_SA": [[30, "theta0-sa"]], "THETA_PLOT": [[5, "theta-plot"]], "THETA_TRAPPED": [[30, "theta-trapped"]], "THREED_EXB_DPHI0DR": [[22, "threed-exb-dphi0dr"]], "THREED_EXB_MODEL": [[22, "threed-exb-model"]], "THREED_MODEL": [[22, "threed-model"]], "Table of geometry parameters": [[10, "table-of-geometry-parameters"]], "Table of inputs and outputs": [[32, "table-of-inputs-and-outputs"]], "Tabular list for input.cgyro": [[6, "tabular-list-for-input-cgyro"]], "Tabular list for input.gyro": [[15, "tabular-list-for-input-gyro"]], "The General Atomics GACODE Suite": [[17, "the-general-atomics-gacode-suite"]], "The rotation profile": [[26, "the-rotation-profile"]], "Theoretical basis for sonic rotation": [[26, "theoretical-basis-for-sonic-rotation"]], "Time Stepping": [[6, "id7"]], "Time-independent output": [[7, "id1"]], "Transport equations and solution": [[33, "transport-equations-and-solution"]], "UDSYMMETRY_FLAG": [[5, "udsymmetry-flag"]], "UL1: The local gyroBohm limit of global codes differs from local codes": [[13, "ul1-the-local-gyrobohm-limit-of-global-codes-differs-from-local-codes"]], "UL2: Full torus simulations are necessary to correctly compute the local transport": [[13, "ul2-full-torus-simulations-are-necessary-to-correctly-compute-the-local-transport"]], "UL3: Eulerian codes have inadequate velocity-space resolution": [[13, "ul3-eulerian-codes-have-inadequate-velocity-space-resolution"]], "UL4: The parallel nonlinearity can have a dramatic effect on the transport": [[13, "ul4-the-parallel-nonlinearity-can-have-a-dramatic-effect-on-the-transport"]], "UNITS": [[30, "units"]], "UPWIND_SINGLE_FLAG": [[5, "upwind-single-flag"]], "UP_ALPHA": [[5, "up-alpha"]], "UP_RADIAL": [[5, "up-radial"]], "UP_THETA": [[5, "up-theta"]], "USE_BISECTION": [[30, "use-bisection"]], "USE_BPAR": [[30, "use-bpar"]], "USE_BPER": [[30, "use-bper"]], "USE_INBOARD_DETRAPPED": [[30, "use-inboard-detrapped"]], "USE_MHD_RULE": [[30, "use-mhd-rule"]], "USE_TRANSPORT_MODEL": [[30, "use-transport-model"]], "Ubuntu/Mint": [[1, "ubuntu-mint"]], "Urban Legends": [[13, "urban-legends"]], "VELOCITY_ORDER": [[5, "velocity-order"]], "VEXB": [[30, "vexb"]], "VEXB_SHEAR": [[30, "vexb-shear"]], "VPAR_1": [[30, "vpar-1"]], "VPAR_MODEL": [[30, "vpar-model"]], "VPAR_SHEAR_1": [[30, "vpar-shear-1"]], "VPAR_SHEAR_MODEL": [[30, "vpar-shear-model"]], "Verification Studies": [[16, "verification-studies"]], "WD_ZERO": [[30, "wd-zero"]], "WIDTH": [[30, "width"]], "WIDTH_MIN": [[30, "width-min"]], "WRITE_WAVEFUNCTION_FLAG": [[30, "write-wavefunction-flag"]], "XNUE": [[30, "xnue"]], "XNU_FACTOR": [[30, "xnu-factor"]], "XNU_MODEL": [[30, "xnu-model"]], "XWELL_SA": [[30, "xwell-sa"]], "Yearly Publication Synopsis": [[13, "yearly-publication-synopsis"]], "ZEFF": [[30, "zeff"]], "ZETA": [[5, "zeta"], [22, "zeta"]], "ZETA_LOC": [[30, "zeta-loc"]], "ZF_TEST_MODE": [[5, "zf-test-mode"]], "ZMAG": [[5, "zmag"]], "ZMAG_OVER_A": [[22, "zmag-over-a"]], "ZMAJ_LOC": [[30, "zmaj-loc"]], "ZS_1": [[30, "zs-1"]], "Z_*": [[5, "z"], [22, "z"]], "Z_EFF": [[5, "z-eff"]], "Z_EFF_METHOD": [[5, "z-eff-method"]], "density_spectrum": [[31, "density-spectrum"]], "eigenvalue_spectrum": [[31, "eigenvalue-spectrum"]], "field_spectrum": [[31, "field-spectrum"]], "input.gacode": [[18, "input-gacode"]], "input.tgyro Alphabetical List": [[39, "input-tgyro-alphabetical-list"]], "input.tgyro Tabular List": [[40, "input-tgyro-tabular-list"]], "intensity_spectrum": [[31, "intensity-spectrum"]], "nsts_crossphase_spectrum": [[31, "nsts-crossphase-spectrum"]], "out.neo.equil": [[24, "out-neo-equil"]], "out.neo.exp_norm": [[24, "out-neo-exp-norm"]], "out.neo.f": [[24, "out-neo-f"]], "out.neo.grid": [[24, "out-neo-grid"]], "out.neo.phi": [[24, "out-neo-phi"]], "out.neo.rotation": [[24, "out-neo-rotation"]], "out.neo.species": [[24, "out-neo-species"]], "out.neo.theory": [[24, "out-neo-theory"]], "out.neo.theory_nclass": [[24, "out-neo-theory-nclass"]], "out.neo.transport": [[24, "out-neo-transport"]], "out.neo.transport_exp": [[24, "out-neo-transport-exp"]], "out.neo.transport_flux": [[24, "out-neo-transport-flux"]], "out.neo.transport_gv": [[24, "out-neo-transport-gv"]], "out.neo.vel": [[24, "out-neo-vel"]], "out.neo.vel_fourier": [[24, "out-neo-vel-fourier"]], "profiles_gen": [[25, "profiles-gen"]], "s-alpha geometry parameters": [[32, "id5"]], "sat_geo_spectrum": [[31, "sat-geo-spectrum"]], "scalar_saturation_parameters": [[31, "scalar-saturation-parameters"]], "spectral_shift": [[31, "spectral-shift"]], "sum_flux_spectrum": [[31, "sum-flux-spectrum"]], "temperature_spectrum": [[31, "temperature-spectrum"]]}, "docnames": ["build", "build/pre_linux", "build/pre_osx", "cgyro", "cgyro/FAQ", "cgyro/cgyro_list", "cgyro/cgyro_table", "cgyro/outputs", "cgyro/running_cases", "download", "geometry", "gyro", "gyro/gyro_gallery", "gyro/gyro_history", "gyro/gyro_list", "gyro/gyro_table", "gyro/gyro_vv", "index", "input_gacode", "license", "misc", "neo", "neo/neo_list", "neo/neo_table", "neo/outputs", "prgen", "rotation", "setup", "shortfall", "tglf", "tglf/tglf_list", "tglf/tglf_output_list", "tglf/tglf_table", "tgyro", "tgyro/equations", "tgyro/output", "tgyro/plot", "tgyro/scenarios", "tgyro/solver", "tgyro/tgyro_list", "tgyro/tgyro_table", "workshop", "zreferences"], "envversion": {"sphinx": 61, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinxcontrib.bibtex": 9}, "filenames": ["build.rst", "build/pre_linux.rst", "build/pre_osx.rst", "cgyro.rst", "cgyro/FAQ.rst", "cgyro/cgyro_list.rst", "cgyro/cgyro_table.rst", "cgyro/outputs.rst", "cgyro/running_cases.rst", "download.rst", "geometry.rst", "gyro.rst", "gyro/gyro_gallery.rst", "gyro/gyro_history.rst", "gyro/gyro_list.rst", "gyro/gyro_table.rst", "gyro/gyro_vv.rst", "index.rst", "input_gacode.rst", "license.rst", "misc.rst", "neo.rst", "neo/neo_list.rst", "neo/neo_table.rst", "neo/outputs.rst", "prgen.rst", "rotation.rst", "setup.rst", "shortfall.rst", "tglf.rst", "tglf/tglf_list.rst", "tglf/tglf_output_list.rst", "tglf/tglf_table.rst", "tgyro.rst", "tgyro/equations.rst", "tgyro/output.rst", "tgyro/plot.rst", "tgyro/scenarios.rst", "tgyro/solver.rst", "tgyro/tgyro_list.rst", "tgyro/tgyro_table.rst", "workshop.rst", "zreferences.rst"], "indexentries": {}, "objects": {}, "objnames": {}, "objtypes": {}, "terms": {"": [3, 4, 6, 7, 8, 9, 10, 11, 13, 16, 18, 19, 22, 24, 29, 30, 31, 34, 38, 42], "0": [0, 4, 5, 6, 7, 8, 10, 13, 15, 16, 18, 21, 22, 23, 24, 26, 28, 30, 31, 32, 38, 39, 40, 41], "00": [4, 8, 13, 42], "00035": 42, "00079": 42, "001": [5, 6, 22, 23], "0010": 42, "0029": 42, "005": 28, "00am": 41, "01": [4, 5, 6, 13], "012001": 42, "012008": 42, "012043": 42, "012502": 42, "014004": 42, "014505": 42, "015013": 42, "015015": 42, "016": 42, "02": [9, 39], "020": 42, "022305": 42, "022509": 42, "024004": 42, "03": [4, 13, 42], "032301": 42, "032310": 42, "036036": 42, "039": 42, "04": [39, 42], "042001": 42, "045001": 42, "045005": 42, "05": [13, 30, 39, 42], "052301": [28, 42], "055003": 42, "055013": 42, "055908": 42, "055909": 42, "056116": [28, 42], "06": [9, 16, 39, 42], "060704": 42, "060901": [28, 42], "062302": 42, "062518": 42, "066015": 42, "07": [9, 42], "072303": 42, "072304": 42, "072307": 42, "072505": 24, "0741": 42, "074501": 42, "074505": 42, "075018": 42, "08": [13, 28, 39, 42], "09": [8, 9, 13, 16, 28, 42], "095010": 42, "096005": 42, "0_": 38, "0a": 24, "0th": [5, 22], "1": [0, 4, 5, 6, 7, 8, 9, 10, 13, 16, 18, 21, 22, 23, 24, 26, 27, 30, 31, 32, 34, 37, 38, 39, 40, 42], "10": [3, 5, 6, 13, 18, 28, 39, 42], "100": [4, 5, 6, 28], "1000": 5, "1016": 42, "102301": 42, "102306": 42, "102508": 42, "1051": 42, "1063": 42, "1088": 42, "11": [9, 16, 22, 24, 41, 42], "110": 42, "1103": 42, "112007": 42, "1121": 42, "112303": 42, "112503": [28, 42], "113017": 42, "116007": 42, "11am": 41, "12": [30, 32, 42], "1209": 42, "122305": 42, "122306": 42, "122307": [28, 42], "122309": 42, "122503": 42, "122505": [28, 42], "122507": 42, "125": 42, "128": [13, 27, 42], "128913": 28, "13": [29, 42], "1361": 42, "14": [28, 42], "1477": 42, "1493": 24, "15": [5, 6, 28, 42], "1500": 28, "15th": 42, "16": [3, 5, 6, 11, 24, 27, 28, 30, 32, 42], "1695358": 42, "17": [22, 23, 24, 42], "1741": 42, "18": [28, 29, 42], "1800": 29, "186": 42, "1879": 42, "188": 42, "1897": 24, "19": [3, 18, 24, 29, 42], "1938": 42, "195004": 42, "1973": 24, "1976": 24, "1977": 24, "1982": 24, "1985": 42, "1988": [24, 42], "1990": 13, "1993": 42, "1994": [13, 42], "1995": 42, "1996": 42, "1997": [24, 42], "1998": 42, "1999": [13, 24, 42], "1_": 38, "1e": [5, 6, 14, 15], "1st": [5, 22], "1th": [5, 22], "2": [0, 4, 5, 6, 7, 8, 9, 10, 13, 16, 18, 21, 22, 23, 24, 26, 27, 30, 31, 32, 34, 37, 38, 39, 40, 42], "20": [24, 29, 30, 42], "2000": [11, 17, 42], "2001": [13, 17, 42], "2002": [17, 42], "2003": [11, 16, 17, 42], "2004": [17, 42], "2005": [17, 25, 42], "2006": [17, 42], "2007": [17, 42], "2008": [17, 28, 42], "2009": [17, 28, 42], "2010": [11, 17, 25, 42], "2011": [28, 42], "2012": [24, 28, 42], "2013": [9, 17, 42], "2014": [28, 42], "2016": [28, 42], "2017": 42, "2018": [9, 19, 42], "2019": [30, 42], "2020": 42, "2021": 42, "2022": [17, 20, 42], "21": [28, 29, 30, 32, 42], "2107": 42, "22": [29, 30, 42], "2229": 42, "23": [28, 42], "239": 24, "24": [3, 5, 6, 30, 41], "2408": 42, "2433": 42, "2436852": 42, "2482": 42, "25": [17, 24, 30, 32, 41, 42], "256": 27, "2560": 42, "26": 42, "27": [21, 22, 24, 28], "273": 42, "28": 42, "2834": 24, "2889008": 42, "2d": 22, "2m": 22, "2nd": [5, 6, 22, 32], "2t_e": 5, "2th": [5, 22], "3": [2, 3, 5, 6, 9, 10, 13, 16, 18, 21, 22, 23, 24, 30, 32, 34, 37, 38, 39, 42], "30": [24, 28, 42], "300": 13, "3082": 42, "310": 2, "32": [5, 22, 27], "3211": 42, "3230": 24, "324": 42, "32664": 42, "33": 42, "3335": 42, "3412": 42, "345": 3, "3452e": [21, 22], "356": 42, "384": 39, "3d": [22, 23], "3rd": [5, 6, 13, 22], "4": [0, 4, 5, 6, 9, 13, 14, 15, 16, 22, 23, 24, 27, 30, 32, 39, 42], "40": 42, "400": 16, "4018": 42, "4046": 42, "405": 24, "418": 24, "43": 42, "4326": 42, "44577e": 4, "448": 42, "45": 42, "45am": 41, "4655": 42, "47th": 42, "48": [24, 42], "49": 42, "4904301": 42, "4954905": 42, "4th": 22, "5": [5, 6, 9, 13, 16, 22, 23, 24, 28, 30, 32, 39, 42], "50": [28, 42], "500": 29, "51": 42, "512": 8, "53": 42, "54": 42, "545": 42, "5515": 42, "5579": 42, "56": 42, "58644e": 4, "59": [27, 42], "5th": [5, 28], "6": [4, 5, 13, 16, 22, 23, 24, 39, 42], "60": 16, "61": 42, "62": 42, "63": 42, "64": [0, 5], "65": [30, 32], "6587": 42, "667": 42, "6th": 13, "7": [4, 5, 16, 24, 30, 32], "71": 42, "724": 42, "724e": 5, "73": 42, "741": 42, "744": 42, "74754e": 4, "75": [13, 16, 28, 39], "77": 42, "78": 42, "8": [0, 4, 5, 6, 22, 24, 27, 42], "80": 42, "812": 42, "81550e": 4, "83": 29, "836": 24, "84003e": 4, "85": 42, "865350": 42, "88": 42, "9": [41, 42], "900": 16, "91": 42, "92020e": 4, "94": [13, 42], "95": 42, "96": 29, "97": [13, 42], "9991": 42, "9am": 41, "9i4": 42, "A": [3, 5, 8, 16, 17, 19, 21, 24, 28, 31, 38, 42], "AND": 19, "AS": [9, 19], "AT": 9, "As": [3, 13, 16, 26], "At": [13, 16], "BE": 19, "BES": [13, 17], "BUT": 19, "By": [9, 13, 25, 26, 29, 39], "FOR": 19, "For": [4, 5, 10, 11, 13, 14, 16, 18, 21, 22, 24, 26, 30, 32, 39], "IN": 19, "If": [5, 9, 19, 22, 26, 38, 39], "In": [0, 5, 10, 13, 16, 21, 22, 24, 26, 29, 33, 38, 39, 42], "It": [0, 3, 5, 7, 8, 11, 16, 22, 26, 38, 39], "NO": 19, "NOT": [4, 19], "No": [5, 23, 39], "OF": 19, "ON": 5, "OR": 19, "Of": 22, "On": [5, 8, 13, 38], "One": 13, "THE": 19, "TO": 19, "The": [3, 4, 5, 8, 9, 10, 16, 18, 19, 21, 22, 23, 24, 25, 28, 29, 30, 31, 32, 33, 34, 38, 39, 42], "Then": [4, 38], "There": [0, 5, 13, 16, 17, 18], "These": [4, 13, 18, 23, 24, 28], "To": [0, 4, 5, 8, 9, 12, 13, 18, 19, 27, 38, 39], "WITH": 19, "With": [13, 22, 29], "_": [5, 10, 21, 22, 24, 26, 30, 31, 32, 38], "_0": 26, "_1": [22, 26], "_ade": 22, "_deriv": 22, "_dlnndr": 22, "_dlntdr": 22, "_dphi0dr": 22, "_energi": 24, "_exb": 22, "_in": 21, "_model": 23, "_p": 39, "_para": 22, "_perp": 22, "_r": 22, "_radial": 24, "_relax": 39, "_rot": 22, "_rp": 22, "_scale": [17, 23], "_scenario": 37, "_size": 5, "_speci": 24, "_spitzer": 22, "_theta": 24, "_xi": 24, "_z": 22, "_zp": 22, "a_": [5, 7, 14, 24, 30, 32], "ab": [30, 32], "ab759c": 42, "abc63b": 42, "abc861": 42, "abil": [3, 13, 25, 33], "abl": 13, "about": [10, 13, 16, 17, 18, 22, 27], "abov": [5, 8, 9, 10, 19, 22, 26, 28, 38], "absenc": 5, "absent": 13, "absolut": [16, 30, 32], "absorb": [3, 11], "abstract": 17, "ac": 42, "ac243a": 42, "ac592b": 42, "ac7a4d": 42, "acb20": [10, 18, 42], "acceler": 5, "accept": 8, "access": 17, "accord": 26, "accordingli": 8, "account": 9, "accur": [13, 28, 29, 38], "accuraci": [5, 13, 16, 21, 29, 42], "achiev": [13, 16], "acknowledg": 17, "acm": 42, "acquisit": 13, "across": [4, 13, 24, 28, 42], "action": 19, "activ": [5, 13, 22], "actual": [13, 16], "ad": [3, 8, 11, 13, 16, 17, 18, 22, 24], "adapt": [4, 5, 41], "add": 27, "addit": [8, 13, 21, 22, 24, 26, 30, 33], "address": 16, "adequ": 13, "adiabat": [13, 17, 22, 23, 24, 28, 30, 32], "adiabatic_elec": [17, 32], "adjust": [30, 32, 39], "adopt": [3, 38], "advanc": [13, 16, 42], "advantag": 13, "ae": 13, "affect": [13, 22, 39], "after": [0, 5, 13, 16, 38], "against": [13, 16, 28], "agenda": 17, "agre": [9, 16], "agreement": [13, 16, 17, 19, 29], "agt": [29, 42], "al": [24, 28], "alam": 42, "alcat": [16, 42], "alfv\u00e9n": 13, "algorithm": [3, 11, 13, 17, 33], "align": [4, 10, 24, 26, 30, 37, 38], "alik": 13, "all": [3, 4, 5, 8, 9, 11, 13, 16, 18, 19, 22, 24, 26, 28, 30, 31, 32, 39, 40], "allow": [5, 13, 16, 18, 22, 23, 26, 30, 32, 39], "almost": 0, "along": [5, 10, 22, 29, 30], "alpha": [4, 5, 10, 13, 16, 22, 24, 29, 30, 34, 39, 42], "alpha_": [17, 31, 32], "alpha_mach": [17, 32], "alpha_p": [17, 32], "alpha_quench": [17, 31, 32], "alpha_sa": [17, 32], "alpha_zf": [17, 31, 32], "alphabet": [3, 11, 17, 21, 29, 33], "also": [5, 8, 11, 13, 16, 17, 21, 22, 25, 28, 29, 33, 38], "altern": [26, 28], "although": [3, 13, 28, 33], "altix": 13, "alwai": [5, 13, 24, 26, 39], "am": 42, "ambigu": 13, "ambipolar": 24, "among": [13, 16], "amount": [13, 30, 39, 40], "amp": 6, "amp0": 6, "amp_phi_n": [15, 17], "amper": 13, "amplifi": 26, "amplitud": [5, 6, 13, 14, 15, 30, 31, 32], "an": [0, 3, 4, 5, 8, 13, 16, 18, 19, 21, 22, 25, 26, 29, 30, 38, 39, 42], "analog": 13, "analogi": 26, "analys": 26, "analysi": [13, 26, 28, 41, 42], "analyt": [21, 22, 23, 24], "analyz": 13, "angioni": [16, 42], "angl": [5, 6, 10, 22, 24, 26, 28], "angular": [13, 22, 23, 24, 26, 32, 34, 42], "ani": [5, 9, 19, 28, 30, 38, 39], "aniso": [23, 24], "aniso_model_": [17, 23], "aniso_model_1": 22, "aniso_model_2": 22, "aniso_model_3": 22, "anisotrop": [22, 23, 24], "anisotropi": 16, "anomal": [17, 42], "anomali": 16, "anti": [10, 30], "antisymmetr": [5, 6, 22], "apart": 13, "app": [16, 42], "appar": 16, "appear": [13, 26], "append": 21, "appli": [5, 13, 26, 38], "applic": [13, 16, 28, 42], "approach": [3, 11], "appropri": 19, "approxim": [13, 21, 26, 30, 38, 39], "apt": 1, "ar": [3, 4, 5, 8, 9, 10, 11, 16, 17, 18, 19, 21, 22, 23, 24, 26, 28, 29, 30, 33, 38, 39], "arash": 41, "arbitrari": [4, 18, 21, 22, 23, 38], "arbon": 42, "architechtur": 42, "area": [9, 34, 42], "aris": [19, 26, 39], "around": 26, "arrai": [5, 22, 23, 24, 30, 32], "arrow": 26, "articl": [9, 19, 28], "artifici": [4, 13], "artun": 42, "as_1": [17, 32], "ascii": [24, 28], "asdex": [29, 42], "ash": [13, 39, 42], "ashourvan": 41, "ask": 17, "aspect": [3, 11, 22, 29], "assess": 39, "associ": [16, 19, 22, 24, 28, 38], "assum": [22, 24, 30], "assumpt": [30, 38], "asymmetr": [18, 24], "asymmetri": [21, 22, 24, 26, 28], "asymptot": [13, 21], "atom": [8, 12, 13, 27, 42], "attempt": [13, 16], "attend": 13, "attent": [8, 38], "attenu": 16, "attribut": 12, "austin": 42, "author": [9, 19], "auto": [8, 10], "autodetect": 4, "automat": 5, "aux": [34, 37], "auxiliari": [34, 39], "avail": [3, 5, 9, 13, 19, 22, 23, 28], "availbl": 28, "averag": [5, 13, 16, 22, 24, 26, 28, 34, 42], "avoid": 30, "axi": [31, 42], "axisymmetr": [22, 26, 42], "azevedo": 42, "b": [5, 6, 10, 13, 14, 16, 22, 24, 26, 30, 31, 32, 42], "b_": [4, 5, 7, 10, 14, 16, 22, 24, 30, 31, 32], "b_model_sa": [17, 32], "b_p": [5, 18, 22, 26], "b_t": [5, 22, 26], "balanc": [13, 17, 39, 40, 42], "ball": [8, 41], "balloon": [5, 29, 30, 32, 42], "banana": 26, "bar": [13, 16, 28], "barn": [28, 42], "barrier": [13, 25, 26, 29], "base": [5, 9, 13, 17, 19, 22, 25, 28, 33, 39, 42], "baselin": 42, "bashrc": 27, "basi": [17, 22, 28, 30, 32, 38], "basic": 16, "bc08": [3, 9, 21, 26, 42], "bc09": [21, 26, 42], "bc12": [3, 9, 21, 42], "bc17": [3, 11, 42], "bc18": [3, 11, 42], "bcbh11": [28, 42], "beam": [16, 18, 26, 34, 42], "becam": 25, "becaus": [5, 26, 38, 39], "becom": [3, 11, 26], "been": [10, 13, 16, 21, 28, 29, 38], "beer": [13, 42], "befor": 13, "began": 13, "begin": [4, 23, 24, 26, 37, 38], "begun": 13, "behav": 16, "behaviour": 39, "being": [5, 13, 31, 32], "believ": [13, 26], "belli": 42, "below": [9, 10, 13, 16, 24, 26, 27, 28, 30, 34], "benchamark": 21, "benchmark": [13, 16, 17, 29], "beta": [5, 6, 13, 17, 22, 32, 39, 40, 42], "beta_": [4, 5, 10, 22], "beta_star": [10, 17, 23], "beta_star_scal": [6, 10], "betae_unit": [6, 10, 41], "betae_unit_scal": 6, "better": 29, "between": [4, 5, 13, 16, 24, 25, 28, 29, 38], "beyond": 21, "bf": 22, "bh96a": [13, 42], "bh96b": [13, 42], "bin": [0, 5, 7, 27], "binari": [0, 7], "binorm": [5, 6], "bisect": [30, 32], "bit": 5, "black": 16, "block": 38, "blue": [10, 16], "bogacki": 5, "bohm": [13, 16, 31, 32, 42], "bonanomi": 42, "bootstrap": [18, 24], "both": [5, 10, 13, 16, 25, 26, 29, 30, 32, 38, 41], "bottino": 42, "bounc": 42, "bound": [17, 22], "boundari": [3, 11, 13, 22, 30, 32, 38], "box": [5, 17, 41], "box_siz": 6, "bpar": 30, "bracket": 26, "bravenec": [13, 28, 42], "breadth": 5, "break": 13, "bremsstrahlung": 18, "brief": [11, 33], "bring": 16, "broad": 13, "broken": 42, "bt": 22, "btccw": [6, 10, 17, 23], "build": [13, 17, 30], "bull": 42, "bunit": 4, "burden": 8, "burrel": 42, "byer": 42, "c": [4, 7, 13, 17, 18, 22, 24, 26, 28, 42], "c1": 39, "c2": 39, "c3": 39, "c4": 39, "c5": 39, "c6": 39, "c_": [3, 5, 7, 16, 24, 26, 28, 30, 32, 38, 39], "c_0": 10, "c_1": 10, "c_2": 10, "c_3": 10, "c_i": 26, "c_n": 10, "ca": 42, "cal": [26, 38], "calcul": [3, 13, 21, 24, 25, 28, 29, 34, 39, 40, 42], "calibr": [3, 11, 30], "call": [6, 13, 21, 25, 28, 30, 32, 33], "camenen": 28, "can": [0, 4, 5, 8, 10, 16, 17, 18, 21, 22, 26, 28, 30, 38, 39], "can05": [13, 42], "cancel": [13, 26], "candi": [12, 16, 28, 42], "cannot": [13, 26], "capabl": [13, 16, 38], "captur": [21, 30], "carbon": [5, 16], "carefulli": 13, "carri": [13, 16, 18, 26], "carrington": 42, "carter": 42, "casati": 16, "case": [5, 10, 11, 13, 17, 21, 22, 24, 26, 27, 28, 30, 38, 39], "cash": 5, "casson": 42, "cat": 18, "caus": [26, 30], "caution": 30, "cb10": [3, 10, 11, 42], "cb18": [3, 11, 42], "cbb16": [3, 4, 9, 11, 42], "cbs20": [3, 42], "cc": 13, "ccw": [30, 32], "cd": [0, 8], "cdot": [22, 26], "cece": 13, "cell": [13, 28, 42], "center": [5, 13, 22, 24], "central": [28, 29], "centrifug": [21, 26, 42], "centroid": [30, 32], "cer": [17, 28], "certain": 13, "cg": 38, "cgyro": [0, 4, 8, 9, 10, 11, 17, 18, 20, 21, 26, 27, 30, 33, 34, 39, 42], "cgyro_plot": 8, "ch": 24, "chain": 34, "challeng": 25, "chang": [5, 9, 19, 22, 24, 29, 30, 39], "character": [3, 11, 13, 42], "characterist": 28, "charg": [5, 6, 18, 19, 22, 23, 24, 30, 32], "chassi": 13, "check": [13, 22, 41], "chen": 42, "chi": [10, 29], "chi_": 16, "chi_e": [16, 29], "chi_i": 16, "choic": [5, 22, 30, 39], "choos": [5, 7], "chowdhuri": [28, 42], "chri": 28, "chw": [9, 42], "circa": [11, 17, 25], "circl": [10, 16], "circul": 13, "circular": [10, 29], "circumst": 26, "citat": [9, 29, 42], "cj": 24, "claim": [13, 19], "clarifi": [13, 16, 26], "classic": [5, 11, 17], "clean": 0, "clear": [13, 25], "clebsch": 10, "clock": 27, "clockwis": [5, 10, 22], "clone": [0, 9], "close": [5, 8, 13, 16, 38], "closur": [30, 32], "cluster": 13, "cm": [34, 38], "cmat": 5, "co": [10, 13, 24], "coars": [13, 39], "code": [4, 11, 16, 19, 21, 22, 24, 25, 26, 27, 29, 33, 39, 41, 42], "coeffici": [7, 13, 17, 22, 23, 24, 26, 30], "cohen": 42, "col": [24, 34], "collabor": 28, "collect": 17, "collis": [4, 5, 13, 21, 22, 23, 24, 28, 30, 32, 42], "collision": [3, 5, 11, 13, 21, 24, 28, 34, 39, 42], "collision_ene_diffus": 6, "collision_ene_restor": 6, "collision_field_model": 6, "collision_kperp": 6, "collision_model": [6, 17, 23], "collision_mom_restor": 6, "collision_precision_mod": 6, "collisionless": 5, "colloc": 22, "colorado": 16, "column": [18, 31], "com": [0, 9, 19, 41], "combin": [13, 24, 26], "command": [0, 2, 18], "comment": [5, 14, 17, 18, 22, 23, 28, 30, 31, 39], "commment": [5, 22], "commod": 13, "common": [27, 28, 30, 32], "commonli": 13, "commun": [3, 5, 6, 11, 13, 16, 42], "compar": [13, 16, 28, 29, 33, 39, 42], "comparison": [13, 17, 28, 42], "compars": 16, "compens": 29, "compfluid": 42, "compil": [0, 2, 9, 13, 19], "complement": [3, 11, 21], "complementari": 16, "complet": [0, 3, 11, 16, 21, 26, 27, 28], "complex": 26, "complic": 3, "compon": [6, 24, 38], "comprehens": [13, 34, 42], "compression": [17, 30, 32], "comput": [5, 10, 16, 17, 22, 30, 32, 39, 42], "concentr": 16, "concept": 17, "conceptu": 25, "conclus": 13, "condit": [3, 9, 11, 13, 16, 19, 22, 38], "conduct": [16, 18], "conf": 42, "confer": [13, 42], "configur": [8, 10], "confin": [28, 29, 42], "confirm": 13, "confront": 13, "connect": [13, 17, 18, 19, 33, 38, 39], "connor": [5, 22], "consequ": 42, "conserv": [5, 6, 13], "consid": 13, "consider": 17, "consist": [5, 6, 13, 17, 24, 39, 42], "constant": [5, 22, 26], "construct": 10, "consult": 10, "contact": 16, "contain": [7, 13, 16, 18, 21, 24, 26], "context": 13, "continu": [13, 39], "continuum": 28, "contour": 10, "contract": 19, "contrast": [16, 29, 42], "contribut": [13, 30, 32], "control": [4, 5, 13, 16, 39, 42], "convect": [16, 18, 24], "conveni": [18, 38], "convent": 10, "converg": [5, 13, 28, 38, 42], "coordin": [3, 5, 7, 17, 22], "copi": [0, 5, 9, 19], "copyright": [9, 19], "core": [3, 8, 11, 13, 27, 28, 29, 42], "cori": 41, "corioli": [13, 26], "correct": 13, "correctli": 17, "correl": [13, 16], "correspond": [5, 10, 16, 21, 22, 39], "corrug": [13, 42], "cosin": [22, 24], "cost": 5, "could": [8, 13], "count": 8, "counter": [5, 10, 22], "counterclockwis": 10, "coupl": [13, 21, 22, 30, 38, 42], "courant": 13, "courtesi": 12, "cover": [3, 11, 16, 30], "cowlei": 42, "cpc": [13, 42], "cpu": [5, 17], "crai": [13, 42], "creat": [0, 13, 25], "crictic": 13, "critic": 26, "cross": [17, 21, 31, 32, 42], "crucial": [13, 16], "csb": [3, 42], "cum": 42, "curiou": 38, "current": [5, 6, 13, 18, 22, 23, 24, 28, 42], "curv": [13, 16], "curvatur": [26, 30, 32, 42], "custom": 41, "cut": [3, 11], "cutoff": [30, 32], "cw03a": [3, 11, 13, 42], "cw03b": [3, 9, 11, 13, 16, 42], "cw06": [13, 42], "cwc": [28, 42], "cwd04": [3, 11, 13, 16, 42], "cwfh07a": [13, 42], "cwfh07b": [13, 42], "cwpc06": [13, 42], "cwr04": [13, 42], "cyclon": [13, 17], "cyclotron": 16, "cylindr": 10, "d": [3, 5, 10, 13, 17, 18, 20, 21, 22, 24, 26, 29, 30, 32, 34, 42], "dai": 41, "damag": 19, "damp": 13, "dannert": 42, "dash": 16, "data": [5, 6, 10, 13, 17, 18, 22, 24, 25, 28, 39], "databas": [3, 11, 13, 29], "dataset": 18, "date": [0, 13, 25, 28, 41], "dcd": [29, 30, 42], "deal": [19, 38], "deby": [6, 17, 32], "debye_factor": [17, 32], "decad": [3, 13], "decid": 25, "decoupl": [13, 39, 40], "decreas": [4, 5, 16], "decyk": 42, "dedic": 27, "deduc": 26, "default": [4, 5, 6, 14, 15, 22, 23, 30, 32, 39, 40], "defin": [5, 10, 21, 22, 24, 26, 30, 32, 33, 38], "defind": 30, "definit": [4, 5, 10, 14, 18, 22, 23, 26, 30, 32, 34, 39], "deform": 10, "delai": 13, "delta": [4, 6, 7, 10, 13, 14, 16, 17, 18, 23, 28, 30, 31, 32, 38, 39, 42], "delta_": [22, 38], "delta_loc": [17, 32], "delta_t": [4, 6], "delta_t_method": [4, 6], "demand": 5, "demonstr": [13, 16, 29], "den": [5, 22], "denot": [13, 26, 38], "dens_": [6, 17, 23], "dens_1": [5, 22], "dens_2": 22, "dens_3": 22, "densiti": [3, 5, 6, 13, 16, 17, 18, 21, 22, 23, 24, 26, 28, 29, 30, 31, 32, 33, 38, 39, 40, 42], "density_spectrum": [17, 32], "depart": 9, "departur": 13, "depend": [5, 13, 22, 26, 31, 32, 38, 42], "deprec": 32, "depress": 13, "depric": 30, "depth": 5, "deriv": [5, 22, 26, 38], "describ": [13, 17, 26, 38], "descript": [3, 6, 7, 13, 15, 17, 18, 21, 23, 26, 31, 32, 33, 40], "design": [3, 16, 17, 28, 33], "desir": [5, 38], "desktop": 17, "detail": [0, 13, 16, 17, 22, 26, 28, 34, 38, 39], "determin": [5, 22, 23, 38], "dettrick": 42, "deuterium": [3, 5, 21, 22, 24], "dev": 1, "develop": [2, 3, 9, 11, 13, 17, 21, 29, 39], "deviat": [13, 21, 28], "devic": 29, "dh93": [13, 42], "dh95": [16, 42], "diagnos": 13, "diagnost": [8, 13, 17, 22, 28, 41, 42], "diagon": [5, 16, 38], "diamagnet": [16, 22, 24, 26], "dickinson": 42, "did": 13, "differ": [17, 22, 24, 28, 30, 31, 32, 34, 38, 39], "differenti": 13, "difficulti": [13, 16], "diffus": [5, 6, 13, 16], "diii": [5, 10, 13, 17, 20, 22, 29, 42], "dimens": [7, 22], "dimension": [13, 24], "dimensionless": [5, 18, 24, 25, 38, 39], "dimit": [13, 42], "dir": 39, "direct": [5, 13, 16, 22, 28, 30, 32, 42], "directli": [7, 22, 38], "directori": 0, "dirichlet": 13, "disabl": 5, "discharg": [13, 16, 28, 29, 42], "disclaim": [9, 19], "discontinu": [13, 42], "discover": 13, "discoveri": 13, "discret": [5, 13, 17, 28, 42], "discuss": [5, 16, 26], "dishcharg": 28, "dispar": 42, "displaystyl": [4, 5, 18, 24, 26, 38, 39], "dissimilar": 13, "dissip": [5, 13, 42], "distanc": 5, "distinct": [13, 38], "distinguish": 30, "distribut": [5, 6, 9, 13, 16, 17, 24], "divid": [5, 10], "divisor": 5, "djkr00": [13, 42], "dke": [22, 23, 24], "dlnndr": [5, 22], "dlnndr_": [6, 17, 23], "dlnndr_1": 22, "dlnndr_2": 22, "dlnndr_3": 22, "dlnndre": 22, "dlnndre_ad": [17, 23], "dlntdr": [5, 22], "dlntdr_": [6, 17, 23], "dlntdr_1": 22, "dlntdr_2": 22, "dlntdr_3": 22, "dlntdr_para_": [17, 23], "dlntdr_para_1": 22, "dlntdr_para_2": 22, "dlntdr_para_3": 22, "dlntdr_perp_": [17, 23], "dlntdr_perp_1": 22, "dlntdr_perp_2": 22, "dlntdr_perp_3": 22, "dlntdre": 22, "dlntdre_ad": [17, 23], "dn": 34, "dn_": [30, 32], "do": [13, 19, 39], "document": [13, 19, 28], "doe": [4, 9, 13, 16, 22, 30, 39], "doi": 42, "domain": [6, 7, 13, 22], "domin": [3, 11, 13, 30], "done": [16, 22, 28], "dong": [16, 42], "dopper": 6, "doppler": [6, 17, 30, 32], "dorland": [13, 42], "dot": 16, "doteq": [4, 5, 22, 26, 38], "down": [6, 10, 16, 18, 21, 24, 28], "download": [2, 17, 28], "dp": 5, "dphi0dr": [17, 23], "dr": [5, 10, 22, 24, 26, 30, 32, 34], "draft": [9, 19], "drain": 13, "dramat": 17, "drastic": 5, "draw": 13, "drift": [13, 21, 22, 23, 26, 28, 30, 32, 42], "driftwav": [30, 32], "drive": 13, "driven": [18, 26, 42], "drmajdx_loc": [17, 32], "drmindx_loc": [17, 32], "dt": 39, "dt_": [30, 32], "du": 42, "dud": 42, "dud22": [29, 30, 42], "due": [5, 13, 16, 22, 26, 28, 29, 30, 42], "dunigan": 42, "dure": [5, 13], "dux": 42, "dv": 34, "dwbc96": [13, 42], "dx": 38, "dynam": [13, 21, 37, 39, 42], "dynamo": 13, "dz": 39, "dzmag": [6, 10], "dzmajdx_loc": [17, 32], "e": [4, 5, 6, 7, 8, 13, 14, 16, 18, 21, 22, 23, 24, 26, 28, 30, 32, 38, 42], "e0": 31, "e19": 24, "e_": [22, 24], "e_a": [5, 7], "e_max": 6, "e_r": [18, 22, 23, 26], "each": [0, 22, 24, 30, 31, 32, 39], "earli": [13, 42], "earliest": 13, "easiest": 8, "edg": [3, 11, 28], "edit": 0, "edlund": 42, "ee": 5, "eff": [5, 16, 18], "effect": [4, 5, 16, 17, 18, 22, 24, 26, 28, 29, 30, 32, 39, 42], "effici": [13, 39], "effort": [3, 13], "efit": [25, 28], "egrid": 7, "ei": [5, 30, 32, 37], "eigenmod": [29, 30, 32], "eigenvalu": [5, 30, 31, 32, 42], "eigenvalue_spectrum": [17, 32], "eikon": [30, 32], "either": [13, 27], "electon": 13, "electr": [5, 22, 23, 24, 26, 39, 40, 42], "electrion": 28, "electromagnet": [3, 6, 11, 13, 17, 28, 29, 39, 42], "electron": [3, 5, 6, 11, 13, 17, 18, 22, 23, 24, 26, 28, 29, 30, 32, 38, 39, 40, 42], "electrostat": [13, 24, 26, 28, 30], "element": [5, 22, 34], "elev": [5, 6, 10, 18, 22, 23, 30, 32], "elimin": 39, "elit": [30, 32], "ell": 10, "elong": [5, 6, 10, 18, 22, 23, 29, 30, 32], "elsewher": 8, "em": 28, "email": [9, 19, 41], "emcw05": [11, 13, 16, 42], "emcw06a": [13, 16, 42], "emcw06b": [13, 42], "emf": 13, "emiss": 16, "emphas": [13, 26, 38], "emploi": 38, "enabl": [5, 6], "encount": 16, "encourag": [7, 28], "end": [4, 13, 24, 26, 37, 38], "energet": [13, 17, 39], "energi": [5, 6, 7, 9, 13, 16, 17, 18, 22, 24, 29, 31, 32, 33, 38, 39, 42], "energy_grid": 28, "enforc": [4, 5, 6, 13, 30, 38, 39], "enhanc": [26, 42], "enorm": 13, "enough": 30, "ensembl": 33, "ensur": [9, 19, 28], "enter": [0, 22], "entir": [0, 18], "entri": 24, "entropi": [13, 42], "env": [0, 27], "environ": [13, 17, 41], "envis": 38, "epar0": [17, 23], "epar0_spitz": [17, 23], "eq": 38, "equal": [13, 22, 23, 26, 30, 32, 39], "equat": [3, 4, 7, 11, 13, 17, 21, 22, 24, 26, 29, 38, 39, 42], "equil": 17, "equilibria": [17, 18], "equilibrium": [5, 7, 10, 13, 16, 18, 22, 24, 25, 26, 28, 29], "equilibrium_model": [6, 10, 17, 23], "equival": [5, 10, 13], "era": 11, "erg": [34, 38], "error": [4, 5, 6, 7, 13, 16, 28, 38, 39], "error_tol": [4, 6], "esl": 21, "esoter": 13, "especi": 29, "essenti": 16, "establish": [8, 13, 25], "estim": 5, "estrada": [16, 42], "et": [24, 28], "eta": 39, "eta_": 38, "etc": [13, 39, 41], "etg": [13, 16, 29, 30, 32], "etg_factor": [17, 32], "ethes": 42, "ethier": 42, "eulearian": 28, "eulerian": [3, 17, 21, 42], "eurofus": 42, "european": 16, "evalu": [38, 42], "even": [5, 13, 38], "event": 19, "eventu": 13, "ever": [], "everi": [5, 18, 39], "evid": 16, "evolut": [5, 9, 28, 38, 39, 40, 42], "evolv": [5, 6, 13, 38, 39, 40], "exact": [38, 39], "exactli": [0, 22], "exam": 28, "examin": [13, 28], "exampl": [0, 10, 13, 26, 39], "exb": [23, 29, 30, 32], "exch": 39, "exchang": [18, 31, 32, 34, 37, 39, 42], "exclud": [30, 32], "exec": 0, "execut": 8, "exercis": 16, "exist": 0, "exp": 38, "exp_norm": 17, "expans": 22, "expect": [10, 13], "expens": 38, "experi": [13, 16, 26, 39, 42], "experiment": [5, 10, 13, 16, 17, 18, 21, 22, 23, 25], "explanatori": [30, 32], "explicit": [4, 5, 13, 38], "explor": 13, "expon": [30, 32], "export": [0, 27], "express": [19, 26], "extens": 21, "extra": [17, 28], "extrem": 16, "extrema": 10, "f": [13, 17, 28, 34, 39, 42], "f_": [24, 26], "f_c": 16, "f_i": 26, "f_p": 39, "fabl": 42, "fact": 13, "factor": [5, 6, 10, 13, 16, 18, 22, 23, 24, 30, 31, 32, 42], "fahei": [13, 42], "failur": 13, "faith": 34, "fals": [13, 30, 32], "faq": 3, "fast": [17, 18, 39, 42], "faster": 5, "fastest": 5, "fc04": [13, 42], "featur": [13, 23, 38], "februari": [16, 41], "feedback": 13, "few": [8, 13, 39], "fftw": [1, 2], "field": [4, 5, 8, 16, 17, 22, 23, 24, 26, 30, 31, 32, 39, 40, 42], "field_print_flag": [6, 7], "field_spectrum": [17, 32], "fig": 16, "figur": [10, 12, 16, 28], "file": [5, 8, 10, 17, 19, 21, 22, 28, 29, 33, 39, 41], "filenam": [7, 24, 32], "filesystem": 13, "fill": 23, "filter": [17, 32], "final": [25, 26, 39], "find": [0, 8, 16, 29, 30, 32, 39], "find_width": [17, 32], "fine": 13, "finit": [5, 13, 14, 22, 28, 29, 38, 39], "fior": 42, "first": [3, 5, 8, 11, 13, 18, 21, 22, 24, 28, 29, 39, 42], "fit": [19, 29], "fix": [4, 5, 13, 24, 38, 39, 41], "flag": [5, 8, 22, 39], "flexibl": 38, "flow": [5, 6, 13, 16, 22, 24, 26, 30, 42], "flr": 6, "fluct": 41, "fluctuat": [5, 13, 16, 26, 28, 29, 30, 31, 32, 39, 42], "fluid": [24, 29, 42], "flutter": 30, "flux": [5, 6, 7, 13, 16, 17, 18, 21, 22, 24, 26, 28, 29, 30, 31, 32, 38, 39, 41, 42], "focus": [3, 13, 29], "fokker": [21, 22, 26, 42], "folder": 0, "follow": [0, 5, 9, 13, 16, 19, 21, 24, 26, 27, 38], "forc": 17, "forgotten": 11, "form": [10, 13, 21, 22, 26, 34, 38], "formal": [13, 17], "format": [5, 13, 17, 24, 25, 26, 28, 42], "formul": [3, 11, 17, 26], "formula": [26, 39, 40], "fortran": [0, 1, 2], "forward": 38, "found": [0, 9, 13, 16, 28, 29, 38], "foundat": [13, 34], "fourier": [5, 22, 23, 24, 30, 32], "fp": 22, "frac": [4, 5, 7, 10, 13, 18, 22, 24, 26, 30, 31, 32, 34, 38, 39], "fraction": [13, 26, 30, 32], "francisco": 42, "frankli": 38, "free": [9, 13, 19, 26], "freq": [7, 31], "freq_tol": 6, "frequenc": [5, 6, 7, 16, 18, 22, 23, 24, 26, 30, 32], "frequent": 17, "fridai": 41, "friend": 41, "from": [3, 5, 10, 11, 16, 17, 19, 21, 22, 24, 25, 26, 28, 29, 30, 32, 39], "ft_model_sa": [17, 32], "fu": [16, 37, 42], "full": [0, 5, 16, 17, 21, 22, 26, 42], "fulli": 13, "function": [5, 13, 16, 22, 24, 26, 30, 32, 38], "fund": 9, "fundament": 4, "furnish": 19, "furth": 42, "further": 10, "fusion": [3, 9, 11, 13, 18, 19, 27, 41, 42], "futur": [3, 13, 28, 42], "g": [3, 8, 10, 18, 21, 22, 24, 42], "g_": 24, "ga": [13, 17], "gacod": [0, 3, 4, 5, 9, 10, 21, 25, 26, 27, 28, 33, 34, 39, 40, 41], "gacode_platform": [0, 27], "gacode_qsub": [8, 27], "gacode_root": [0, 27], "gacode_setup": [0, 27], "gafus": 0, "galleri": [11, 17], "gam": 13, "gamma": [22, 30, 31], "gamma_": [6, 7, 24, 26, 32, 39, 41], "gamma_1": 32, "gamma_2": 32, "gamma_a": [7, 34], "gamma_e_scal": 6, "gamma_p": [6, 26, 41], "gamma_p_scal": 6, "gamot": 42, "gap": 13, "gat": [9, 19, 41], "gauss": [30, 32], "gaussian": 30, "gb": [7, 24, 32, 38], "gcc": 2, "gcc13": 2, "gchat": [17, 32], "ge": 28, "gem": [16, 28], "gene": [16, 28], "gener": [5, 8, 10, 12, 13, 18, 21, 22, 26, 28, 29, 30, 34, 38, 39, 41, 42], "geo": [7, 22, 28, 41], "geo_ni": [17, 23], "geo_yin": [17, 23], "geometr": [22, 30], "geometri": [3, 16, 22, 24, 25, 28, 29, 30, 31, 42], "geometry_flag": [17, 32], "georg": 42, "geqdsk": 28, "get": [9, 21, 30], "gfile": 25, "gflux_print_flag": 6, "gfortran": [0, 1], "ghat": [17, 32], "git": 0, "github": [0, 3, 9, 17], "give": [4, 10, 13, 26, 27, 31, 33], "given": [4, 5, 13, 22, 26, 38, 39], "gk": [3, 6, 7, 11, 13, 29, 30], "gkw": 17, "glf23": [13, 29], "global": [3, 5, 11, 17, 22, 27, 28, 39, 42], "goal": [13, 38], "good": [13, 16, 39], "gpu": [5, 6, 17], "gpu_bigmem_flag": 6, "grad": [10, 22], "grad_r0": 30, "gradb": [30, 32], "gradb_factor": [17, 32], "gradient": [3, 5, 6, 11, 13, 17, 22, 23, 24, 26, 29, 30, 32, 38, 39, 40, 42], "graduat": 13, "grain": 13, "grant": 19, "greater": 4, "greatli": [3, 11], "green": 16, "greenwald": 42, "grid": [5, 7, 13, 17, 18, 22, 30, 39], "gridpoint": [5, 6, 13, 18, 22, 23, 24, 38], "grierson": 42, "groebner": 42, "group": [13, 16, 17, 19, 28, 42], "grow": 13, "grown": 13, "growth": [13, 16, 28, 30, 32], "growthrat": [30, 32], "gs2": [13, 16, 28], "gss": [29, 42], "gstotal": 13, "gtc": 16, "guid": [5, 10, 42], "gv": 24, "gwt": [28, 42], "gyro": [3, 5, 9, 10, 13, 17, 21, 25, 26, 29, 30, 31, 32, 33, 39, 42], "gyroaverag": [3, 13], "gyrobohm": [7, 17, 30, 32, 38, 39, 42], "gyrofluid": [13, 28, 42], "gyrokinet": [4, 9, 11, 17, 21, 25, 26, 28, 29, 42], "gyroradii": 13, "gyroradiu": [4, 7, 13, 30, 32], "gyrovisc": 24, "gyroviscos": 24, "g\u00f6rler": [28, 42], "h": [13, 24, 28, 29, 42], "h_print_flag": 6, "ha": [3, 11, 13, 16, 21, 27, 28, 29, 30, 31, 32, 38, 39], "had": 13, "hahm": 42, "half": [7, 13], "hallatschek": 42, "hammett": [13, 42], "hamper": 13, "hand": [5, 10, 13, 22], "handl": 25, "hardwar": [5, 13], "harmon": [5, 10], "harri": 42, "hat": [18, 22, 24, 38], "have": [3, 10, 11, 16, 17, 26, 28, 29, 38, 39], "hazeltin": 24, "hazltin": 24, "hbc": [13, 42], "hcw": [13, 42], "he": 42, "he4": 39, "heat": [13, 16, 24, 34, 39, 42], "heavi": 26, "hein": 42, "helium": [13, 39, 42], "help": [0, 16], "henc": 26, "here": [4, 5, 10, 13, 18, 21, 26, 28, 38], "herebi": 19, "hermit": [30, 32], "heurist": 42, "hh": 24, "hhw": [3, 11, 42], "hidden": 30, "hierarchi": 41, "high": [4, 5, 21, 29, 30, 32, 39, 42], "higher": [13, 22, 23, 26, 39], "highli": [3, 13, 42], "hinton": [13, 17, 22, 24, 26, 42], "hirshman": [22, 24, 39], "histor": [10, 13], "histori": [11, 17], "hoc": [3, 11, 22], "hol16": [28, 42], "hold": [13, 26, 39], "holder": 19, "holland": [13, 16, 28, 42], "home": 0, "homogen": 42, "horton": [24, 42], "host": 7, "hostnam": 7, "houlberg": 24, "how": [4, 5, 18, 22, 39], "howard": 42, "howev": [9, 10, 13, 16, 19], "hpc": [13, 17, 41], "hr": 24, "http": [2, 42], "hu": 42, "huck": 42, "human": 7, "hw06": [13, 42], "hw85": [26, 42], "hwc04": [13, 42], "hwm": [28, 42], "hybrid": 42, "hybridtest": 0, "hypothesi": 13, "i": [0, 3, 4, 5, 7, 8, 9, 10, 11, 13, 14, 16, 18, 19, 21, 22, 23, 24, 26, 27, 28, 29, 30, 31, 32, 33, 34, 38, 39, 41, 42], "i0": 26, "i1": 26, "i_": [30, 32], "iaea": 42, "ibm": 13, "ibranch": [17, 32], "idea": 25, "ident": 13, "identifi": 13, "identit": 28, "idiosyncrat": 11, "ie": 24, "ieee": 42, "iflux": [17, 32], "ignor": [13, 18, 22, 26, 30, 32, 38], "igor": 41, "iii": 42, "imag": [11, 16, 17, 42], "imex": 13, "immedi": 30, "impact": 42, "implement": [13, 16, 26, 28, 42], "impli": 19, "implic": [41, 42], "implicit": [4, 13, 38], "import": [0, 3, 13, 26, 29, 30, 38], "impos": [13, 16], "improv": [13, 25, 29, 30], "impur": [13, 17, 26, 39, 42], "inadequ": 17, "inc": 0, "includ": [5, 9, 11, 12, 13, 16, 18, 19, 21, 22, 23, 24, 28, 30, 32, 38, 42], "inclus": [5, 26, 28], "incorpor": 16, "incorrect": 16, "increas": [5, 10, 13, 16, 26, 29, 39], "increasingli": [3, 11], "inde": 13, "independ": [5, 13, 22, 26, 33, 38, 39], "index": [7, 22, 31], "indic": 13, "individu": 28, "induc": [5, 13, 22, 26], "induct": [22, 23], "infer": [5, 10, 13, 22], "infinit": 29, "influenc": [26, 38], "info": [4, 5, 7], "inform": [3, 7, 10, 11, 18, 24, 27], "initi": [5, 6, 9, 13, 14, 15, 16, 25, 28, 39, 40, 42], "inject": 26, "inner": 5, "input": [4, 7, 8, 10, 11, 17, 24, 25, 28, 29, 31, 41], "insid": 5, "insofar": 21, "instabl": [13, 30, 32, 42], "instal": [0, 1, 2, 17], "instanc": [26, 33, 39], "instead": [22, 33, 38], "instruct": 27, "instrument": 16, "int": 34, "int_": 22, "int_0": [34, 38], "int_r": 38, "integ": [5, 22, 23], "integr": [3, 4, 5, 6, 13, 22, 33, 38, 39], "intens": [5, 16, 29, 31, 32, 42], "intensity_spectrum": [17, 32], "interact": 8, "intercod": 16, "interconnect": 13, "interest": [11, 28, 38], "interestingli": 13, "interfac": [3, 7, 17, 21, 22, 32], "intern": [5, 6, 22, 42], "interpol": 24, "interpret": 24, "interprocess": 42, "interv": 6, "intev": 16, "introduc": 38, "invari": 4, "invent": 13, "investig": [13, 28], "invit": 42, "inward": [30, 32], "ion": [5, 6, 7, 13, 16, 18, 22, 24, 26, 28, 29, 30, 32, 38, 39, 40, 42], "ip": [5, 22], "ipccw": [6, 10, 17, 23], "ipm": 13, "iri": [], "irreduc": [30, 32], "isotop": 42, "isotrop": 22, "isotropi": 13, "issu": [9, 13, 19, 28], "itb": 13, "iter": [38, 39, 42], "iterdb": 28, "iterdb2gyro": 25, "iterdb_read": 25, "itg": [13, 16, 29, 30], "itpa": 28, "its": [3, 5, 13, 16, 22, 29, 33], "ix": 24, "j": [12, 16, 24, 28, 38, 42], "j_": 24, "j_r": 34, "jacobian": [17, 34, 39, 40], "jan": 17, "jb": [18, 21], "jbstor": 18, "jcp": 42, "jenko": 42, "jet": [13, 29], "jift": 41, "jj": 38, "jnb": 18, "job": [8, 25, 27, 33, 39], "journal": 13, "jr": 42, "jrf": 18, "jt60": 13, "juli": 16, "june": [16, 42], "justifi": 26, "k": [22, 24, 29, 30, 32, 42], "k_": [5, 16, 24, 30, 32], "k_a": 26, "k_per": [30, 32], "k_r": 16, "k_x": [5, 6, 7, 31, 32], "k_y": [4, 5, 6, 7, 31, 32], "kaiser": 42, "kappa": [6, 10, 17, 18, 23, 30, 32], "kappa_loc": [17, 32], "karp": 5, "kay": 42, "kb": 29, "keep": 0, "kei": [3, 4, 13, 16, 17, 38], "kept": 5, "kerbel": 42, "kernel": [3, 7], "kev": [4, 18, 24], "kg": [21, 22, 24], "kh94": [13, 42], "kiefer": 42, "kim": 42, "kind": 19, "kinet": [3, 5, 11, 13, 21, 22, 23, 24, 28, 29, 39, 42], "kinsei": 42, "kishimoto": 42, "kkh": [13, 42], "knolker": 42, "know": 10, "known": [13, 26], "knoxvil": 42, "koh": 24, "kojak": 13, "kone": 42, "kot88": [13, 42], "kotschenreuth": [13, 42], "kramer": 42, "kro99": [13, 42], "kromm": [13, 42], "krt95": [13, 42], "ksw08": [29, 42], "kutta": 13, "kwc05": [3, 11, 13, 42], "kwc06": [3, 11, 13, 42], "kwc07": [3, 11, 13, 42], "kx": [31, 32], "kx0": [30, 32], "kx0_loc": [17, 32], "kx_e": [31, 32], "kx_phi": 41, "kxky_apar": [5, 7], "kxky_bpar": [5, 7], "kxky_e": 7, "kxky_n": 7, "kxky_phi": [5, 7], "kxky_v": 7, "ky": [4, 6, 17, 32], "ky_cflux": 7, "ky_flux": [7, 41], "ky_phi": 41, "kygrid_model": [17, 32], "kymin": 30, "l": [5, 13, 16, 17, 20, 22, 29, 42], "l11": 22, "l12": 22, "l21": 22, "l22": 22, "l25": 42, "l_": 24, "l_0": 5, "l_m": 22, "l_t": 16, "l_x": [5, 39], "label": 18, "lack": 29, "laguerr": [5, 22, 24], "lambda": [5, 22], "lambda_": 24, "lambda_deby": 6, "lambda_debye_scal": 6, "landau": [13, 29, 42], "landmark": 13, "langl": [26, 34], "languag": 13, "laptop": 17, "larg": [3, 4, 5, 8, 11, 13, 16, 22, 26, 30, 32, 39, 42], "larger": [3, 5, 11, 13, 16, 29], "larmor": [13, 16, 22, 23, 24, 29], "last": [0, 26, 30, 32, 39], "later": [13, 16], "latter": [13, 16], "law": 42, "layer": [3, 11, 13], "layout": [13, 27], "lcf": 5, "ldot": [5, 13, 24, 26], "le": [5, 16, 22], "le3": 22, "lead": 26, "leav": [5, 26], "leboeuf": 42, "lebrun": 42, "led": 25, "lee": 42, "left": [4, 5, 10, 22, 23, 24, 26, 34, 37, 38, 39], "legaci": [4, 11], "legend": 17, "legendr": [5, 22, 24], "leht02": [13, 42], "length": [3, 5, 6, 13, 21, 22, 24, 30, 32, 39, 40], "less": [5, 13, 39], "lett": [16, 42], "letter": [9, 19], "level": [0, 16, 28, 39], "li": 42, "liabil": 19, "liabl": 19, "libfftw3": 1, "libmpich": 1, "librari": 1, "licens": 17, "like": [3, 8, 10, 11, 13, 16, 18], "limit": [17, 19, 21, 22, 24, 26, 30, 31, 32, 42], "lin": [16, 42], "line": [0, 2, 13, 16, 18, 23, 27, 41], "linear": [5, 8, 13, 14, 16, 21, 22, 28, 29, 30, 41, 42], "link": [0, 17, 28, 41], "linsker": [30, 32], "linsker_factor": [17, 32], "linux": 0, "list": [3, 8, 9, 11, 17, 19, 21, 28, 29, 33], "littl": [13, 29, 38], "ll": [21, 26], "llnl": 16, "ln": [5, 16, 22, 24, 26], "loc": [37, 39], "loc_betae_scal": [17, 40], "loc_dx": [17, 40], "loc_dx_max": [17, 40], "loc_er_feedback_flag": [17, 40], "loc_evolve_grad_only_flag": [17, 40], "loc_he_feedback_flag": 17, "loc_iteration_method": 39, "loc_lock_profile_flag": [17, 40], "loc_rad": [4, 41], "loc_relax": [17, 40], "loc_residual_method": [17, 40], "loc_restart_flag": [17, 40], "loc_scenario": [17, 40], "loc_te_feedback_flag": [17, 40], "loc_ti_feedback_flag": [17, 40], "local": [5, 10, 17, 21, 22, 23, 24, 28, 38, 39, 42], "locat": [13, 16], "locpargen": 4, "log": 5, "logarithm": [23, 30], "logic": 27, "long": [5, 13, 26], "longrightarrow": 26, "look": [10, 18], "loop": 5, "lorentz": [5, 26], "loss": [5, 13, 26, 42], "lost": 13, "low": [3, 5, 11, 13, 16, 25, 29, 30, 32], "lower": [5, 13, 22], "lowest": [5, 22, 30], "lpe": [13, 42], "luda": 42, "lvert": [16, 30, 32], "m": [5, 18, 24, 26, 28, 42], "m_": [3, 5, 21, 22, 24, 30, 32], "m_a": 34, "m_d": [4, 5, 7, 22, 24], "m_e": 5, "m_i": 26, "m_theta": 24, "ma": 18, "mach": [6, 26, 30, 32], "mach_scal": 6, "machin": 0, "macport": 2, "made": [9, 13, 19, 21, 30, 32], "magnet": [4, 5, 6, 13, 16, 17, 22, 23, 24, 28, 30, 32, 42], "magnitud": [16, 22], "mahinthakumar": 42, "mai": [16, 26, 28, 42], "main": [5, 25, 26, 32, 39], "maintain": [13, 17, 27], "maj": [30, 32], "major": [5, 6, 10, 13, 18, 22, 23, 24, 30, 32], "make": [0, 5, 9, 13, 19, 38, 39], "makefil": 0, "malonei": 42, "manag": [8, 13, 33, 39, 40], "mani": [11, 13], "manner": 13, "manual": 13, "mar": 28, "margin": [13, 16], "marinoni": 42, "mark": 13, "mass": [3, 5, 6, 13, 21, 22, 23, 24, 26, 30, 32], "mass_": [6, 17, 23], "mass_1": [5, 17, 22, 32], "mass_2": [5, 22], "mass_3": [5, 22], "match": [4, 13, 17, 28, 39, 42], "math": 22, "mathbf": [5, 10, 13, 14, 16, 22, 26, 30], "mathrm": [3, 5, 10, 13, 16, 24, 34, 37, 39], "mathtt": [4, 24, 37], "matric": 38, "matrix": [26, 38], "max": [5, 23, 39], "max_": 10, "max_tim": 6, "maxim": [5, 30, 32], "maximum": [5, 6, 13, 22, 30, 32, 39, 40], "maxwel": 42, "maxwellian": [5, 16, 21, 22, 24, 30], "mbox": 38, "mcclenaghan": 42, "mckee": 42, "md": [30, 32], "me": [30, 32], "mean": [10, 13, 22, 26, 42], "meaning": 24, "measur": [5, 13, 16, 22, 26, 28, 30, 32, 38, 42], "mechan": 30, "meet": 13, "memori": [5, 6, 7, 13], "merchant": 19, "mesh": [5, 7, 33], "meshpoint": 5, "method": [4, 13, 16, 17, 29, 30, 32, 38, 39, 42], "metric": [28, 42], "mhd": [13, 30], "microst": [28, 42], "microturbul": 42, "mid": 13, "midplan": [4, 5, 22, 24, 30, 32], "mikkelsen": 42, "mila": [16, 42], "miller": [5, 22, 28, 29, 30], "milovich": 42, "min": [13, 23, 27], "min_": 10, "mine": 0, "minim": [33, 38, 39], "minimium": 5, "minimum": [5, 30, 32, 42], "minor": [3, 4, 5, 6, 10, 13, 18, 21, 22, 23, 24, 30, 32], "mint": 0, "miscellan": 17, "misunderstand": 13, "mit": 13, "mix": 30, "mod": [13, 17, 24, 42], "mode": [5, 6, 7, 8, 13, 14, 16, 17, 20, 21, 22, 23, 24, 29, 30, 31, 32, 39, 40, 42], "model": [3, 5, 6, 9, 10, 11, 13, 16, 22, 24, 26, 28, 30, 31, 32, 33, 39, 42], "modest": 13, "modif": [9, 19], "modifi": [3, 4, 5, 8, 11, 19, 24, 38], "modul": [21, 22], "modular": 13, "moment": [5, 6, 10, 22, 26, 29, 30], "moment_print_flag": [6, 7], "momentum": [5, 6, 7, 10, 13, 17, 18, 24, 32, 42], "monitor": 41, "monolith": [21, 24], "monomi": 22, "monoton": 13, "moor": 42, "more": [3, 11, 13, 18, 22, 28, 29, 30, 38, 39], "moreov": [13, 16], "morph": 25, "most": [0, 5, 13, 16, 26, 28, 30, 32, 33, 34], "mostli": 13, "motiv": [3, 11, 13, 16, 25], "move": [3, 10, 11, 13], "mp": 2, "mpi": [0, 2, 5, 7, 8, 27], "mpich": [1, 2], "mst1": 42, "much": [13, 22], "multi": [11, 13, 16, 21, 39, 42], "multipl": [3, 5, 13, 24, 28, 33, 38], "multipli": [5, 30, 32], "multiscal": [3, 42], "multistream": 13, "must": [0, 5, 10, 13, 22, 38], "mw": 18, "mxh": [10, 18], "mxh3": 10, "mynick": 42, "n": [0, 4, 5, 6, 8, 10, 14, 15, 16, 17, 18, 24, 27, 31, 32, 34, 39, 42], "n_": [5, 21, 22, 24, 30, 31, 32], "n_0": 16, "n_a": [5, 7, 22, 26, 34], "n_c": 16, "n_e": [3, 5, 7, 16, 18, 24, 38], "n_energi": [6, 17, 23, 41], "n_evolv": 39, "n_field": 6, "n_global": 6, "n_mpi": 39, "n_r": 22, "n_radial": [6, 17, 23, 24], "n_speci": [6, 17, 23], "n_theta": [6, 17, 23, 24, 41], "n_toroid": 6, "n_xi": [6, 17, 23, 41], "na": 10, "nabla": [10, 16, 22, 26, 34], "name": [9, 13, 16, 19, 21, 24], "natur": 13, "nbasis_max": [17, 32], "nbasis_min": [17, 32], "nbi": 39, "ncc": [16, 42], "nclass": [21, 22, 24], "ne": [18, 22], "ne_ad": [17, 23], "nearli": 13, "necessari": 17, "need": [0, 5, 8, 14, 25, 38], "neg": [5, 10, 22, 23], "neglect": [10, 13, 16], "neglig": [5, 13], "neo": [0, 3, 9, 10, 16, 17, 25, 26, 27, 33, 34, 38, 39, 40, 42], "neo_": 21, "neo_aniso_model_in": 22, "neo_dens_in": 22, "neo_dlnndr_in": 22, "neo_dlntdr_in": 22, "neo_dlntdr_para_in": 22, "neo_dlntdr_perp_in": 22, "neo_eflux_thchi_out": 24, "neo_eflux_thhhe_out": 24, "neo_eflux_thhhi_out": 24, "neo_eflux_ths_out": 24, "neo_efluxncv_dke_out": 24, "neo_efluxncv_gv_out": 24, "neo_efluxtot_dke_out": 24, "neo_efluxtot_gv_out": 24, "neo_efluxtot_nclass_out": 24, "neo_init": 21, "neo_interfac": [21, 24], "neo_jpar_dke_out": [21, 24], "neo_jpar_nclass_out": 24, "neo_jpar_ths_out": 24, "neo_jtor_dke_out": 24, "neo_jtor_ths_out": 24, "neo_mass_in": 22, "neo_mflux_dke_out": 24, "neo_mflux_gv_out": 24, "neo_n_species_in": 21, "neo_pflux_dke_out": 24, "neo_pflux_gv_out": 24, "neo_pflux_nclass_out": 24, "neo_pflux_thhh_out": 24, "neo_pflux_thhs_out": 24, "neo_profile_dlnndr_scale_in": 22, "neo_profile_dlntdr_scale_in": 22, "neo_rotation_model": 22, "neo_run": 21, "neo_temp_in": 22, "neo_temp_para_in": 22, "neo_temp_perp_in": 22, "neo_vpol_dke_out": 24, "neo_vpol_nclass_out": 24, "neo_vtor_dke_out": 24, "neo_vtor_nclass_out": 24, "neo_z_in": 22, "neoclass": [9, 13, 21, 22, 24, 25, 26, 34, 38, 39, 42], "nersc": [8, 17, 41], "net": 13, "netcdf": 2, "network": [22, 42], "neural": 22, "neutral": [22, 26], "nevin": [13, 42], "new": [0, 3, 10, 16, 18, 25, 29, 30, 32, 39, 42], "new_eikon": [17, 32], "newton": [38, 39, 40], "nexp": 18, "next": [13, 29], "nhd": [13, 42], "ni": 18, "nion": [18, 41], "nishimura": 42, "nky": [17, 31, 32], "nl": 30, "nl00": 8, "nl01": 8, "nl_flag": 41, "nm": 31, "nmode": [17, 31, 32], "no_cbla": 0, "no_lapack": 0, "no_shar": 0, "node": [27, 30, 32], "nois": [13, 42], "nomin": 16, "nomp": [0, 8, 27], "non": [5, 13, 23, 24, 30, 32], "nonadiabat": 13, "nonaxisymmetr": [22, 42], "none": 24, "noninfring": 19, "nonlinear": [3, 5, 6, 8, 11, 14, 16, 17, 28, 29, 41, 42], "nonlinear_flag": 6, "nonloc": [13, 42], "nonreson": 13, "nontherm": [39, 40], "nonuniform": 18, "nonuniformli": 26, "nonzero": [5, 24], "norm": [21, 22, 24, 26], "normal": [5, 6, 10, 13, 16, 17, 22, 23, 24, 30, 31, 32, 34, 38, 39], "normalzi": 38, "notat": [5, 34], "note": [5, 9, 17, 19, 22, 23, 24, 26, 28, 30, 31, 32, 38], "noth": 13, "notic": [9, 19], "nov": 30, "novel": 13, "now": 13, "nq": 4, "ns_in": 31, "nsts_crossphase_spectrum": [17, 32], "nstx": [13, 29, 30, 42], "nth": 39, "ntheta": 41, "nu": [10, 22], "nu_": 5, "nu_1": [17, 23], "nu_e": [6, 41], "nu_ei": 28, "nu_glob": 6, "nucl": 42, "nuclear": 42, "number": [5, 6, 8, 13, 16, 18, 21, 22, 23, 24, 26, 30, 32, 33, 38, 39, 40], "numer": [0, 3, 5, 8, 10, 11, 13, 17, 22, 24, 28, 41, 42], "nunami": 42, "nup_alpha": 6, "nup_radi": 6, "nup_theta": 6, "nwidth": [17, 32], "nx": 28, "nxgrid": [17, 32], "o": [5, 26], "observ": [13, 16, 26, 28], "obtain": [10, 13, 16, 19, 29, 33], "occur": 13, "octob": 42, "odd": 22, "off": [5, 39, 42], "offer": 11, "offload": [5, 6], "offset": [30, 32], "often": [0, 5, 8, 26, 30], "ohm": 42, "ohmic": [16, 18], "oint": 34, "old": 28, "older": 28, "omega": [17, 22, 34], "omega0": 18, "omega_": 26, "omega_0": [18, 22, 24, 26, 34], "omega_1": 26, "omega_intel": 27, "omega_rot": [17, 23, 26], "omega_rot_deriv": [17, 23, 26], "omp": [7, 27], "onc": [5, 27], "one": [5, 10, 13, 22, 30, 32, 38, 39], "ones": [0, 13], "onetwo": [13, 18, 25, 28], "onli": [5, 6, 11, 13, 16, 22, 23, 24, 26, 27, 28, 30, 38, 39], "open": [13, 16], "openbla": 17, "openmp": 0, "oper": [5, 13, 16, 21, 22, 33, 39, 40, 42], "operation": 38, "opposit": 13, "optim": [3, 5, 13, 42], "option": [21, 22, 41], "orbit_grid": 28, "order": [0, 4, 5, 6, 13, 16, 18, 21, 22, 23, 24, 26, 28, 30, 32, 33], "org": 2, "organ": 13, "orient": [5, 6, 17, 22], "orienti": [5, 22], "origin": [13, 28, 38, 39], "ornl": [8, 13, 42], "osx": 0, "other": [5, 10, 13, 16, 19, 22, 25, 28, 33, 39, 42], "otherwis": [9, 19, 22, 28, 30], "our": 13, "out": [5, 7, 8, 13, 16, 17, 18, 19, 22, 26, 29, 30, 32], "outboard": [5, 22, 24, 30, 32], "outer": 5, "output": [5, 8, 17, 22, 23, 25, 28, 29, 30, 31], "outward": 26, "oval": [6, 10], "over": [3, 13, 16, 18, 21, 28, 29, 31, 32], "overal": [4, 30], "overcom": 13, "overestim": 16, "overlin": 32, "overview": [13, 17], "ow": 13, "own": 0, "p": [5, 22, 26, 30, 32, 34, 38, 42], "p_": 24, "p_a": [22, 26], "p_l": 22, "p_prime_loc": [17, 32], "pa": 42, "pace": 42, "packag": 0, "page": 28, "pai": 8, "painstak": 13, "paper": [16, 34], "paradigm": [13, 42], "paradox": [13, 42], "parallel": [5, 7, 14, 17, 18, 22, 23, 24, 26, 30, 31, 32, 33, 39, 42], "paramat": 16, "paramet": [4, 5, 13, 16, 17, 18, 21, 22, 24, 30, 31, 38, 39, 41], "parameter": [5, 10, 28, 42], "paramt": 22, "park": [17, 32], "parker": 42, "parser": 18, "part": [13, 16], "parti": [9, 19], "partial": [4, 5, 10, 22, 24, 26, 30, 32, 34, 38], "partial_t": 38, "particip": 16, "particl": [7, 13, 17, 18, 22, 24, 26, 28, 29, 31, 32, 34, 39, 42], "particular": [13, 19], "particularli": [13, 26], "pascal": 18, "pass": [13, 30, 32, 42], "pass_grid": 28, "past": 3, "patel": 42, "pathologi": 13, "pattern": 13, "pci": [13, 17], "peak": [13, 30, 42], "pedest": [3, 11, 38, 41], "peebl": 42, "peeter": 42, "per": [13, 27, 31, 32, 38], "perc": 13, "percent": 13, "pereverzev": 42, "perfect": 16, "perfectli": [13, 30], "perform": [13, 16, 28, 39, 41, 42], "period": [13, 22, 25], "perlmutt": [17, 41], "perlmutter_cpu": 27, "perlmutter_gpu": 27, "permiss": 19, "permit": 19, "perp": [5, 22], "perpendicular": [16, 22, 23, 41], "persist": 13, "person": 19, "perspect": 17, "perturb": [5, 13, 17], "petascal": 42, "petti": 42, "pfirsh": 26, "pg3eq": [13, 16], "ph": 16, "phase": [16, 29, 31, 32, 42], "phd": 42, "phenomena": [3, 11, 13], "phenomenon": 13, "phi": [5, 7, 10, 14, 17, 18, 26, 31, 32], "phi_": [22, 24, 26], "phi_0": [22, 24, 26], "phi_1": [24, 26], "php": 2, "phy": [16, 24, 42], "physic": [4, 7, 9, 13, 16, 28, 30, 39, 41, 42], "physrevlett": 42, "pi": [5, 10, 18, 22], "pi_": [7, 24, 32], "pi_1": 32, "pi_2": 32, "pi_a": [7, 34], "pi_e": 32, "pic": [13, 16], "pick": 30, "pictur": 13, "pinch": [13, 42], "pinsker": 42, "pioneer": [3, 11], "pip": 41, "pitch": [5, 6, 22, 24, 28], "pittsburgh": 42, "pivot": 39, "place": 29, "plai": [3, 11, 13, 16, 26, 29], "planck": [21, 26, 42], "plank": 22, "plasma": [3, 5, 11, 13, 16, 18, 21, 22, 24, 25, 28, 29, 39, 42], "platform": [8, 13, 17, 27, 41], "pleas": [12, 18], "plot": [8, 16, 17, 28, 41], "plu": [6, 8], "pmac": 13, "pmatrix": 38, "point": [5, 13, 16, 18, 28, 38, 39], "poisson": 21, "pol": 10, "polflux": 18, "poloid": [5, 6, 10, 13, 18, 22, 23, 24, 26, 30, 32, 41, 42], "polynomi": [5, 22, 23, 24, 30, 32], "popul": 42, "popular": [3, 13, 38], "porkolab": 42, "port": [2, 13], "portion": [9, 19], "posit": [5, 10, 22], "possibl": [13, 28, 38], "possibli": 11, "potenti": [5, 13, 22, 24, 26, 30], "power": [13, 16, 17, 18, 38, 39, 40], "ppc": 13, "ppcf": 24, "pppl": 41, "practic": [13, 21, 26, 34], "pre": [11, 17, 25], "precis": [5, 6], "predecessor": 29, "predict": [13, 16, 28, 29, 42], "prefer": [30, 38], "prehistori": 17, "prepend": 21, "prerequisit": 17, "presenc": [13, 26], "present": [9, 12, 13, 16, 17, 19, 22, 24, 26, 41], "preset": 30, "pressur": [3, 5, 6, 11, 18, 22, 23, 30, 32], "prevent": [30, 32], "previou": [13, 26], "primari": [13, 21, 28, 33], "primarili": 3, "prime": [22, 34, 38], "principl": 13, "print": [5, 8, 22], "print_step": [4, 6], "prior": [13, 16], "priori": 26, "probabl": [13, 39], "problem": [5, 13, 22, 23, 38], "proce": 27, "proceed": 42, "process": [25, 39], "produc": [13, 24, 26], "product": [13, 42], "profil": [3, 5, 6, 9, 10, 11, 13, 16, 18, 21, 22, 25, 29, 33, 38, 39, 42], "profile_dlnndr_": [17, 23], "profile_dlnndr_1_scal": 22, "profile_dlnndr_2_scal": 22, "profile_dlnndr_3_scal": 22, "profile_dlntdr_": [17, 23], "profile_dlntdr_1_scal": 22, "profile_dlntdr_2_scal": 22, "profile_dlntdr_3_scal": 22, "profile_equilibrium_model": [10, 17, 23], "profile_erad0_model": [17, 23], "profile_model": [6, 17, 23, 24], "profiles_gen": [4, 17, 18, 41], "profiles_gen_plot": 41, "program": [0, 13], "progress": 13, "project": [0, 5, 13, 21, 27, 42], "pronounc": 13, "propag": 16, "proper": [10, 19], "properli": [10, 13], "properti": [5, 42], "provid": [3, 11, 13, 19, 25, 28], "pseudospectr": 5, "psfc": 41, "psi": [4, 10, 18, 22, 26, 34], "psi_": 10, "pst": 41, "ptot": 18, "public": [9, 12, 16, 17, 19], "publish": [9, 13, 16, 19], "pueschel": 42, "pull": [9, 19], "pure": [13, 16, 26], "purpos": [3, 5, 9, 19], "push": 26, "put": 38, "pygacod": 41, "python": [0, 2, 3, 7, 17], "python3": 2, "q": [4, 6, 10, 13, 17, 18, 23, 24, 26, 30, 32, 34, 38, 42], "q_": [7, 13, 24, 32, 37, 38, 39], "q_1": 32, "q_2": 32, "q_a": [7, 34], "q_e": [16, 32, 37, 38], "q_i": [37, 38], "q_loc": [17, 32], "q_prime_loc": [17, 32], "q_sa": [17, 32], "qa": [30, 32], "qbeam": [18, 37], "qbeami": [18, 37], "qbrem": [18, 37], "qcxi": [18, 37], "qei": [18, 37], "qfuse": [18, 37], "qfusi": [18, 37], "qhat": 38, "qion": [18, 37], "qioni": [18, 37], "ql": [29, 31, 32], "ql_flux_spectrum": [17, 32], "qline": [18, 37], "qmom": 18, "qohm": [18, 37], "qpar_beam": 18, "qpar_wal": 18, "qrfe": [18, 37], "qrfi": [18, 37], "qsync": [18, 37], "quad": [26, 34, 38], "quadratur": [30, 32], "qualit": 28, "qualiti": 25, "quantit": 16, "quantiti": [3, 10, 16, 21, 22, 24, 26, 38], "quasi": [22, 26, 30, 42], "quasilinear": [16, 29, 30, 32, 42], "quasineutr": [4, 5, 6, 39], "quasineutral_flag": 6, "quench": [13, 29, 30, 32, 42], "queri": 0, "question": [13, 17, 28], "queue": 8, "quick": 17, "quit": 13, "r": [0, 4, 5, 10, 12, 13, 16, 18, 21, 22, 24, 26, 30, 32, 34, 38, 42], "r_": [30, 32, 38], "r_0": [5, 10, 18, 22, 24, 26], "r_1": 38, "r_2": 38, "r_3": 38, "r_j": [24, 38], "rad": [18, 34, 37], "radial": [3, 5, 6, 11, 13, 16, 22, 23, 24, 26, 33, 38, 39, 42], "radian": 18, "radiat": [18, 34, 39], "radii": [13, 39], "radiu": [3, 4, 5, 6, 10, 13, 16, 18, 21, 22, 23, 24, 29, 30, 32, 39, 42], "rang": [13, 16, 21, 22], "rangl": [26, 34], "rank": [5, 7, 30, 32], "rapid": 26, "rapidli": [38, 42], "rate": [5, 6, 13, 16, 22, 26, 28, 30, 32, 34], "rather": [7, 13, 26, 38, 39], "ratio": [5, 13, 21, 22, 24, 29, 39], "ration": 13, "rational": 25, "raw": 5, "rb_": [30, 32], "rbf": 28, "rc": 0, "rc_": [30, 32], "re": 22, "reach": 13, "reaction": 39, "reactor": [37, 39, 42], "read": [5, 7, 22, 25, 28, 34, 39], "readabl": 7, "reader": 11, "real": [3, 11, 13, 41], "realist": [13, 42], "realiti": 10, "realli": 26, "reason": 26, "recent": [11, 13, 16, 28, 29, 30], "recipi": 9, "recombin": 18, "recommend": [0, 4, 5, 7, 30], "rectangular": 24, "red": 16, "redistribut": 26, "reduc": [3, 5, 6, 11, 13, 14, 26, 38], "reduct": 13, "reed": 42, "ref": [22, 38], "refer": [5, 13, 17, 19, 24, 28], "refin": [13, 30], "reflect": 10, "reflectomet": 17, "refus": 16, "reg08": 8, "reg14": 18, "regard": 17, "regardless": 22, "regim": [3, 13, 16, 26], "region": [3, 11, 13, 29], "regress": [0, 8], "regular": 8, "rel": [5, 16, 22, 30], "relat": [13, 24, 26, 34], "relax": [13, 38, 39, 40], "relev": [13, 26, 42], "reliabl": 13, "remain": [13, 30], "remark": [16, 26, 29], "renorm": 39, "repeatedli": 13, "repo": [8, 27], "report": [28, 42], "repositori": [0, 17], "repres": [13, 21, 26], "represent": [10, 34, 42], "reproduc": [11, 13, 16, 30], "repsect": 30, "request": [9, 19], "requir": [3, 5, 9, 11, 13, 18, 22, 25, 26, 27, 29, 34, 42], "rescal": 16, "research": [3, 11, 13, 16, 28], "reset": 5, "residu": [13, 38, 39, 40], "resolut": [5, 17, 22, 39, 41, 42], "resolv": [13, 30], "resourc": [13, 16, 28], "respect": [5, 21, 22, 26, 30, 32], "respond": 30, "respons": [29, 42], "restart": [5, 6, 39, 40, 41], "restart_step": 6, "restrict": [9, 13, 19, 26, 38], "result": [5, 8, 9, 11, 13, 17, 19, 26, 29, 30, 38, 42], "retain": [3, 5, 10, 13, 21], "return": [5, 14, 22, 30, 31], "rev": [16, 24, 42], "revers": [13, 42], "review": 13, "revis": 16, "rewoldt": 42, "rf": 18, "rh": [13, 22], "rh98": [13, 42], "rho": [4, 5, 16, 18, 30, 32, 42], "rho_": [4, 5, 7, 13, 16, 21, 22, 24, 28, 31, 38], "rho_i": [21, 26], "rho_ion": 30, "rho_star": [17, 23], "rhode": 42, "right": [4, 5, 10, 19, 22, 23, 24, 26, 34, 37, 38, 39], "rightarrow": [4, 5, 13, 22, 24, 38], "rigor": [13, 26], "rise": 13, "rk": 13, "rk4": 5, "rlns_1": [17, 32], "rlts_1": [17, 32], "rm": [4, 5, 7, 10, 16, 18, 21, 22, 23, 24, 26, 30, 32, 34, 38], "rmaj": [6, 10, 18], "rmaj_loc": [17, 32], "rmaj_over_a": [10, 17, 23], "rmaj_sa": [17, 32], "rmin": [6, 10, 18], "rmin_loc": [17, 32], "rmin_over_a": [10, 17, 23], "rmin_over_a_2": [17, 23], "rmin_sa": [17, 32], "roach": 42, "robust": [13, 16, 38, 39], "roger": 42, "role": [13, 16, 26, 29, 33, 42], "ron": 28, "root": [38, 39], "rosenbluth": [13, 24, 42], "rost": 42, "rotat": [5, 18, 21, 22, 28, 33, 38, 39, 42], "rotation_model": [6, 17, 23, 24], "roth": 42, "rough": 16, "roughli": [10, 13, 16, 30], "routin": [13, 39], "row": 24, "rule": [0, 29, 30, 32, 38, 39, 40, 42], "run": [0, 5, 10, 13, 14, 21, 22, 24, 27, 29, 30, 39], "runawai": 13, "rung": 13, "runtim": 24, "s0021": 42, "s_": [5, 10, 22, 34], "s_1": 10, "s_2": 10, "s_3": 10, "s_delta": [6, 10, 17, 23], "s_delta_loc": [17, 32], "s_e": 38, "s_i": [26, 38], "s_kappa": [6, 10, 17, 23], "s_kappa_loc": [17, 32], "s_n": 10, "s_w": 34, "s_zeta": [6, 10, 17, 23], "s_zeta_loc": [17, 32], "s_zmag": [10, 17, 23], "safe": 39, "safeti": [0, 5, 6, 10, 13, 18, 22, 23, 24, 30, 32, 42], "sai": [0, 26], "same": [11, 13, 16, 26, 28, 39], "sampl": [18, 27, 39], "san": 42, "santoro": 42, "sat0": [29, 30], "sat1": [29, 30, 32], "sat2": [29, 30], "sat3": [29, 30], "sat_geo_spectrum": [17, 32], "sat_rul": [17, 31, 32], "satur": [13, 16, 30, 31, 32, 42], "sauter": 24, "save": 5, "sbc": [29, 30, 42], "sc2004": 42, "scalar": [26, 31, 32], "scalar_saturation_paramet": [17, 32], "scale": [4, 5, 6, 10, 13, 16, 22, 23, 24, 26, 30, 39, 40, 42], "scan": [13, 16], "scatter": 28, "scb": [29, 30, 42], "scenario": [17, 18, 33, 39, 40, 42], "scheme": [5, 13, 22, 38, 39, 40], "schh16": [29, 30, 42], "schl\u00fcter": 26, "schmitz": 42, "schumak": 42, "sci": 42, "scidac": [13, 42], "scienc": 17, "scratch": [3, 11], "screen": 8, "script": 8, "scw": [29, 42], "seamlessli": 13, "search": [30, 32], "second": [4, 24, 26, 28, 39], "section": 26, "see": [4, 5, 9, 18, 22, 26, 29, 30, 32, 33, 39], "seem": 13, "seen": 28, "select": [2, 5, 6, 22], "selector": [5, 6, 23], "self": [5, 6, 13, 24, 30, 32, 39, 42], "selfupd": 2, "send": [9, 41], "sensit": 16, "separ": [13, 16, 25], "seri": [16, 24, 28, 42], "serial": [17, 39], "serv": 28, "set": [0, 2, 4, 5, 8, 13, 21, 22, 26, 28, 30, 31, 32, 39], "setup": 17, "sever": 13, "sevil": 42, "sfiligoi": [41, 42], "sgi": 13, "sh01": [13, 42], "sh98": [26, 34, 42], "shafer": 42, "shafranov": [5, 6, 10, 22, 23, 30], "shall": [9, 19], "shampin": 5, "shan": 42, "shape": [3, 5, 10, 13, 16, 18, 21, 22, 25, 29, 39, 42], "shape_cos0": [6, 10, 17, 18], "shape_cos1": [6, 10, 17, 18], "shape_cos2": [6, 10, 17, 18], "shape_cos3": [6, 10, 17, 18], "shape_s_cos0": [6, 10, 17], "shape_s_cos1": [6, 10, 17], "shape_s_cos2": [6, 10, 17], "shape_s_cos3": [6, 10, 17], "shape_s_sin3": [6, 10, 17], "shape_sin3": [6, 10, 17, 18], "share": [0, 27, 39], "shat_sa": [17, 32], "shear": [5, 6, 10, 13, 16, 17, 23, 24, 26, 29, 30, 32, 42], "shell": 0, "shend": 42, "shift": [6, 10, 13, 17, 23, 29, 30, 31, 32], "shirai": 42, "short": [6, 7, 13, 15, 23, 24, 32, 40], "shorter": 5, "shortfal": [17, 20, 42], "shorthand": 38, "shot": 28, "should": [0, 4, 5, 8, 22, 23, 24, 28, 39], "show": [8, 13, 16, 26, 39], "shown": [10, 13, 16, 23, 28], "shrinkag": 39, "shumak": 42, "shut": 39, "side": 13, "sigma": [24, 38], "sigmar": [22, 24, 39], "sign": [10, 22, 23, 30, 32], "sign_bt": [17, 32], "sign_it": [17, 32], "signal": 39, "signific": [5, 13, 16], "significantli": [13, 16], "silent": 6, "silent_flag": [6, 17, 23, 24], "sim": 38, "sim_model": [17, 23, 24], "simeq": [26, 38], "similar": [13, 26, 28, 42], "simpl": [5, 8, 29, 31, 39], "simpli": 39, "simplif": 34, "simplifi": [13, 30], "simul": [3, 5, 6, 7, 9, 11, 14, 17, 18, 22, 23, 25, 28, 29, 30, 33, 39, 40, 41, 42], "simultan": [13, 16, 39], "sin": [10, 24], "sinc": [13, 21, 28], "sine": 24, "singl": [0, 5, 6, 13, 26, 28, 30, 32], "singular": [5, 13], "size": [4, 6, 13, 16, 40, 41, 42], "sj": 24, "sk10": [9, 42], "sk_": [30, 32], "skw05": [13, 42], "skw07": [3, 9, 11, 13, 29, 30, 42], "slightli": [5, 13, 28], "slow": 16, "slowdown": 13, "slower": 5, "small": [5, 13, 26, 28], "smaller": [5, 13, 14, 16, 39], "smith": 42, "smoooth": 42, "smooth": 38, "snave": 42, "snyder": [13, 42], "so": [5, 6, 13, 16, 19, 22, 25, 27, 28, 30, 33, 38, 39], "soc": 42, "softwar": [9, 13, 19, 27], "solid": 16, "solomon": 42, "solut": [17, 22, 24, 29, 39, 42], "solv": [13, 17, 21, 22, 24, 29, 33, 38, 39], "solver": [3, 11, 17, 21, 22, 33, 42], "some": [11, 13, 17, 23, 28, 34], "sometim": 14, "somewhat": 13, "sonic": [5, 17, 21, 22, 24], "sort": [13, 30, 32], "sound": [3, 7, 13, 16], "sourc": [5, 6, 13, 17, 18, 19, 22, 25, 33, 38, 39, 41], "space": [3, 5, 11, 17, 22, 23, 28, 30, 32, 42], "spain": 42, "span": [5, 13], "spars": 33, "spatial": [13, 16, 22], "speak": 13, "speci": [5, 11, 17, 18, 21, 22, 26, 28, 30, 31, 39, 42], "species1": 22, "specif": [0, 3, 5, 18, 24, 26, 38], "specifi": [5, 18, 22, 23, 25, 39], "spectra": [13, 16, 31, 32], "spectral": [3, 13, 29, 30, 31, 32, 42], "spectral_shift": [17, 32], "spectroscopi": 16, "spectrum": [13, 30, 31, 32], "speed": [3, 5, 6, 7, 22, 24, 26], "spitzer": [22, 23], "spitzer_model": [17, 23], "split": [4, 25], "spot": 16, "spread": 13, "spring": 13, "sqrt": [3, 7, 16, 21, 22, 24], "squar": [5, 6, 10, 16, 18, 22, 23, 30, 32], "src": 8, "sreepathi": 42, "ss": 22, "stabil": [13, 29, 42], "stabl": 13, "staebler": 42, "staff": 13, "stage": 5, "standard": [3, 4, 5, 10, 13, 17, 22, 25, 26, 28, 30, 32, 39], "star": 42, "start": [13, 18, 28, 39], "startup": 39, "state": [13, 33, 38, 42], "statefil": 25, "static": [37, 39], "statist": [7, 13], "statu": 42, "steadi": [13, 33, 38, 42], "steep": 26, "steeper": [3, 11], "step": [4, 5, 13, 27, 38, 39, 40], "stiff": 39, "still": [13, 38], "storag": 42, "store": [30, 32], "strategi": [17, 41], "strength": [10, 22], "stress": [31, 32], "stripe": 5, "strong": [13, 16, 22, 24, 26], "strongli": [8, 18, 28], "structur": 13, "student": 13, "studi": [13, 17, 26, 28, 42], "subdomin": 13, "subject": [9, 19, 26, 41], "submiss": 13, "submit": 8, "subroutin": [17, 21, 22], "subscript": 26, "substanti": [9, 19], "substitut": 26, "subtl": 26, "success": [0, 13, 16], "successfulli": [13, 16], "sudo": [1, 2], "suffer": 13, "suffici": [4, 18], "sugama": [5, 6, 17, 24, 26, 34, 42], "suggest": [3, 8, 13, 24, 33], "suit": [0, 13], "suitabl": [0, 3, 11, 25], "sum": [18, 26, 31, 32, 38], "sum_": [10, 24], "sum_a": [22, 34], "sum_flux_spectrum": [17, 32], "sum_p": 39, "summar": [13, 34], "summari": [11, 16, 28], "summer": 25, "sung": 42, "supercomput": [13, 17, 42], "support": [13, 39], "suppress": [10, 26, 42], "supra": 17, "surfac": [5, 13, 17, 18, 21, 22, 24, 26, 30, 32, 34, 42], "surprisingli": 29, "svpablo": 13, "swck13": [29, 30, 42], "sweep": 17, "switch": [7, 13, 30], "swnn11": [26, 42], "symbol": [10, 23], "symmetr": [5, 6, 10, 22], "symmetri": 6, "synchrotron": 18, "synopsi": 17, "synthet": [13, 17, 28, 42], "system": [3, 5, 8, 10, 13, 22, 26, 29, 30, 32, 38, 41], "systemat": [13, 28], "t": [5, 7, 8, 10, 13, 16, 24, 26, 28, 30, 32, 34, 38, 41, 42], "t_": [5, 16, 21, 22, 24, 26, 30, 32, 38], "t_0": 16, "t_a": 22, "t_e": [3, 5, 7, 13, 16, 18, 24, 38, 39], "t_i": [13, 26, 38, 39], "ta": [22, 24], "tabl": [5, 14, 17, 22, 26, 29, 30, 31], "tabular": [3, 11, 17, 33], "tag": 7, "taguchi": 24, "tajima": 42, "take": [13, 23, 24], "taken": [16, 28, 38], "talk": [41, 42], "tang": 42, "tardini": 42, "target": [13, 38, 39], "task": [0, 7, 8], "tau": 13, "tau_": [22, 24], "taus_1": [17, 32], "tdg": [29, 42], "te": [4, 18, 22, 42], "te_ad": [17, 23], "team": 42, "tech": 42, "technic": [10, 13, 42], "tem": [13, 29, 30], "temp": [5, 22], "temp_": [6, 17, 23], "temp_1": [5, 22], "temp_2": 22, "temp_3": 22, "temp_para_": [17, 23], "temp_para_1": 22, "temp_para_2": 22, "temp_para_3": 22, "temp_perp_": [17, 23], "temp_perp_1": 22, "temp_perp_2": 22, "temp_perp_3": 22, "temperatur": [3, 5, 6, 13, 17, 18, 21, 22, 23, 24, 26, 28, 29, 30, 31, 32, 33, 38, 39, 40, 42], "temperature_spectrum": [17, 32], "temperaur": 23, "templat": [0, 8], "ten": 13, "tend": 13, "term": [5, 6, 13, 16, 21, 22, 24, 26, 30, 32, 38], "test": [0, 5, 6, 8, 9, 13, 16, 19, 22, 28], "text": [13, 26, 28, 29, 34, 38], "tftr": 29, "tg": 24, "tglf": [0, 3, 9, 11, 13, 17, 28, 33, 42], "tglf1": 39, "tglf2": 39, "tglf3": 39, "tglf4": 39, "tglf_adiabatic_elec_in": 32, "tglf_alpha_e_in": 32, "tglf_alpha_mach_in": 32, "tglf_alpha_p_in": 32, "tglf_alpha_quench_in": 32, "tglf_alpha_sa_in": 32, "tglf_as_in": 32, "tglf_b_model_sa_in": 32, "tglf_betae_in": 32, "tglf_debye_factor_in": 32, "tglf_debye_in": 32, "tglf_delta_loc_in": 32, "tglf_drmajdx_loc_in": 32, "tglf_drmindx_loc_in": 32, "tglf_dzmajdx_loc_in": 32, "tglf_elec_eflux_out": 32, "tglf_elec_mflux_out": 32, "tglf_elec_pflux_out": 32, "tglf_etg_factor_in": 32, "tglf_filter_in": 32, "tglf_find_width_in": 32, "tglf_ft_model_sa_in": 32, "tglf_gchat_in": 32, "tglf_geometry_flag_in": 32, "tglf_ghat_in": 32, "tglf_gradb_factor_in": 32, "tglf_ibranch_in": [30, 32], "tglf_iflux_in": 32, "tglf_ion1_eflux_out": 32, "tglf_ion1_mflux_out": 32, "tglf_ion1_pflux_out": 32, "tglf_ion2_eflux_out": 32, "tglf_ion2_mflux_out": 32, "tglf_ion2_pflux_out": 32, "tglf_kappa_loc_in": 32, "tglf_kx0_in": 32, "tglf_ky_in": 32, "tglf_kygrid_model_in": 32, "tglf_linsker_factor_in": 32, "tglf_mass_in": 32, "tglf_nbasis_max_in": 32, "tglf_nbasis_min_in": 32, "tglf_new_eikonal_in": [30, 32], "tglf_nky_in": 32, "tglf_nmodes_in": 32, "tglf_ns_in": 32, "tglf_nwidth_in": 32, "tglf_nxgrid_in": 32, "tglf_p_prime_loc_in": 32, "tglf_park_in": 32, "tglf_q_loc_in": 32, "tglf_q_prime_loc_in": 32, "tglf_q_sa_in": 32, "tglf_rlns_in": 32, "tglf_rlts_in": 32, "tglf_rmaj_loc_in": 32, "tglf_rmaj_sa_in": 32, "tglf_rmin_loc_in": 32, "tglf_rmin_sa_in": 32, "tglf_s_delta_loc_in": 32, "tglf_s_kappa_loc_in": 32, "tglf_s_zeta_loc_in": 32, "tglf_sat_rule_in": 32, "tglf_shat_sa_in": 32, "tglf_sign_bt_in": 32, "tglf_sign_it_in": 32, "tglf_taus_in": 32, "tglf_theta0_sa_in": 32, "tglf_theta_trapped_in": 32, "tglf_tm": 32, "tglf_use_bisection_in": 32, "tglf_use_bpar_in": 32, "tglf_use_bper_in": 32, "tglf_use_inboard_detrapped_in": 32, "tglf_use_mhd_rule_in": 32, "tglf_use_transport_model_in": 32, "tglf_vexb_in": 32, "tglf_vexb_shear_in": 32, "tglf_vpar_in": 32, "tglf_vpar_model_in": 32, "tglf_vpar_shear_in": 32, "tglf_vpar_shear_model_in": 32, "tglf_wd_zero_in": 32, "tglf_width_in": 32, "tglf_width_min_in": 32, "tglf_write_wavefunction_flag_in": 32, "tglf_xnu_factor_in": 32, "tglf_xnu_model_in": 32, "tglf_xnue_in": 32, "tglf_xwell_sa_in": 32, "tglf_zeff_in": 32, "tglf_zeta_loc_in": 32, "tglf_zmaj_loc_in": 32, "tglf_zs_in": 32, "tgyro": [9, 17, 18, 24, 27, 42], "tgyro_den_method": [17, 40], "tgyro_den_method0": 39, "tgyro_den_method1": 39, "tgyro_den_method2": 39, "tgyro_den_method3": 39, "tgyro_den_method4": 39, "tgyro_iteration_method": [17, 40], "tgyro_mod": [17, 40], "tgyro_neo_method": [17, 40], "tgyro_relax_iter": [17, 40], "tgyro_rmax": 39, "tgyro_therm_flag": [17, 40], "tgyro_therm_flag1": 39, "tgyro_write_profiles_flag": [17, 40], "than": [4, 5, 13, 26, 30, 32, 38, 39], "thank": 28, "thei": [13, 21], "them": 26, "themselv": 22, "theoret": [17, 34], "theori": [10, 13, 17, 21, 22, 27, 28, 34, 39, 42], "theory_nclass": 17, "thermal": [13, 16, 18, 22, 24, 26, 39, 40, 42], "thermodiffus": 16, "thermonuclear": 39, "thermostat": 42, "thesi": [13, 16, 42], "theta": [5, 6, 7, 10, 16, 22, 24, 26, 30, 32, 34], "theta0_sa": [17, 32], "theta_0": [5, 41], "theta_i": 5, "theta_j": 24, "theta_r": 10, "theta_trap": [17, 32], "thi": [0, 3, 5, 8, 9, 10, 11, 13, 14, 16, 19, 21, 22, 25, 26, 27, 28, 29, 30, 31, 32, 34, 38, 39], "thing": 16, "third": [9, 19], "thome": 42, "those": [13, 21, 28], "though": 38, "thousand": [3, 11, 13], "thread": [0, 7], "three": [16, 38], "threed": 22, "threed_exb_dphi0dr": [17, 23], "threed_exb_model": [17, 23], "threed_model": [17, 23], "threshold": [13, 30, 32], "through": [17, 26], "throughout": 26, "thu": [5, 10, 13, 22, 26, 38], "thursdai": 41, "ti": [4, 13, 18, 42], "tild": 31, "tilt": [6, 10, 18], "tim": 29, "time": [3, 4, 5, 10, 13, 14, 16, 22, 24, 26, 27, 28, 30, 32, 33, 38, 41], "timer": 7, "timestamp": 7, "timestep": [4, 5, 13, 41], "tn": 42, "tobia": 28, "togeth": [5, 21], "toggl": [5, 6, 39, 40], "tokamak": [10, 13, 17, 26, 28, 29, 42], "told": 42, "toler": [4, 5, 6], "tool": [2, 4, 13, 18, 21, 25, 27, 28, 42], "top": [0, 30, 32], "topic": [9, 16, 28, 42], "tor": [10, 28, 30, 32], "tore": 17, "torodi": 22, "toroid": [3, 5, 10, 13, 16, 18, 22, 23, 24, 26, 30, 31, 32, 42], "toroidals_per_proc": [], "torqu": [18, 26], "tort": 19, "toru": [5, 17, 22], "tot": [37, 39], "total": [0, 18, 22, 24, 31, 38, 39], "toward": [3, 11, 13], "transform": [24, 39], "transit": 13, "transp": 25, "transport": [3, 5, 9, 10, 11, 17, 19, 22, 25, 26, 28, 29, 32, 38, 39, 42], "transport_exp": 17, "transport_flux": 17, "transport_gv": 17, "transvers": [30, 32], "trap": [4, 13, 16, 26, 29, 30, 32, 42], "trap_grid": 28, "trapezoid": 38, "treat": [3, 5, 13, 21, 22, 26, 30], "treatment": [10, 42], "triangular": [5, 6, 10, 18, 22, 23, 30, 32], "trigger": [5, 13], "true": [13, 26, 30, 32, 38], "truli": 16, "truncat": 38, "truth": 13, "tsujii": 42, "tube": [13, 16], "tur": 34, "turb": 38, "turbul": [3, 11, 13, 17, 19, 26, 28, 34, 38, 42], "turco": 42, "tutori": 28, "two": [3, 16, 28, 30, 32, 38, 42], "tynan": 42, "type": [0, 8, 18, 30, 31, 32], "typic": [5, 10, 13, 22, 25], "u": [6, 9, 13, 24, 26, 30, 42], "u_": [24, 26], "ucsd": 13, "udsymmetry_flag": 6, "uk": 42, "ul1": 17, "ul2": 17, "ul3": 17, "ul4": 17, "uncertainti": [13, 16], "unchang": [5, 13, 39], "under": [13, 26], "underestim": 16, "underli": [13, 26], "underpredict": [13, 16], "understand": [3, 11, 34], "unequ": 39, "unifi": 17, "unimport": [5, 14], "uniqu": [25, 38], "unit": [3, 4, 5, 7, 10, 17, 18, 21, 22, 24, 31, 32, 34], "uniti": 39, "units_in": 32, "univ": 16, "univers": [13, 42], "unless": 28, "unlik": [5, 33], "unperturb": 16, "unphys": 30, "unpublish": 13, "unsolv": 13, "unstabl": [5, 13, 30, 32], "unsubstanti": 13, "until": 13, "up": [0, 6, 16, 18, 21, 24, 28, 30, 32], "up_alpha": 6, "up_radi": 6, "up_theta": 6, "updat": [5, 6, 9, 28, 38, 40], "upgrad": 42, "upon": 13, "upper": 22, "upshift": 13, "upwind": [5, 6, 42], "upwind_single_flag": 6, "urban": 17, "urg": 28, "url": [12, 42], "us": [0, 3, 4, 5, 6, 7, 8, 9, 10, 12, 13, 16, 17, 18, 19, 21, 22, 25, 26, 27, 28, 29, 30, 31, 32, 33, 38, 39, 41, 42], "usag": [5, 7], "use_bisect": [17, 32], "use_bp": [17, 32], "use_bpar": [17, 32], "use_inboard_detrap": [17, 32], "use_lock": 0, "use_mhd_rul": [17, 32], "use_thread": 0, "use_transport_model": [17, 32], "user": [0, 3, 5, 17, 19, 30, 32, 33, 42], "usernam": 9, "usual": [5, 26], "util": 13, "v": [2, 21, 22, 23, 24, 26, 28, 34, 38, 42], "v_": [22, 24, 26, 30, 32], "v_a": 7, "v_i": 5, "valid": [11, 13, 17, 24, 26, 28, 42], "valu": [4, 5, 7, 13, 14, 16, 22, 23, 24, 28, 30, 32, 39, 42], "van": 42, "vanish": 13, "varepsilon": 22, "varepsilon_": [5, 24], "vari": [13, 16, 26], "variabl": [13, 17, 34, 38], "variant": [13, 38], "variat": [3, 11, 13, 24, 38, 39], "variou": [7, 13, 21, 28], "varphi": [5, 10, 22, 24, 26, 34], "vathd": [13, 42], "vector": [7, 13, 22, 24, 38], "vel": 17, "vel_fouri": 17, "veloc": [3, 5, 6, 17, 18, 21, 22, 23, 26, 28, 30, 31, 32, 41, 42], "velocity_ord": 6, "veri": [5, 8, 16], "verif": [11, 13, 17, 28, 42], "verifi": [13, 16], "verner": 5, "version": [7, 9, 28, 30, 39], "versu": [7, 16, 41], "vertic": 16, "vetter": [13, 42], "vexb": [17, 32], "vexb_shear": [17, 32], "via": [10, 13, 16, 17, 22, 23, 42], "view": [5, 13, 22], "virtual": 41, "visual": 41, "vol": [24, 42], "voltag": 13, "volum": [34, 38], "vpar": [30, 32], "vpar_1": [17, 32], "vpar_model": [17, 32], "vpar_shear_1": [17, 32], "vpar_shear_model": [17, 32], "vpol": 18, "vtor": 18, "w": [8, 24, 27, 34, 42], "w_a": 34, "wa": [0, 3, 10, 11, 13, 16, 21, 25, 26, 33, 38], "wabc06": [13, 42], "wai": [26, 38], "wal05": [13, 42], "wall": [18, 27, 34], "waltz": [4, 12, 13, 42], "wan": 42, "warranti": 19, "wast": 13, "watanab": 42, "wathd": [13, 42], "wave": [13, 16, 30, 42], "wavelength": [5, 13, 26], "wavenumb": [3, 4, 5, 6, 11], "wc05": [13, 42], "wcc": [13, 42], "wcf07": [13, 42], "wch": [13, 42], "wcp06": [13, 42], "wcr02": [13, 42], "wd_zero": [17, 32], "we": [0, 4, 5, 7, 10, 11, 13, 16, 22, 24, 26, 27, 28, 29, 33, 34, 38], "weak": [5, 38], "weaker": 13, "weber": 18, "weight": [7, 29, 30, 31, 32], "welcom": [9, 19, 28], "well": [13, 16, 21, 26, 28, 30, 32], "were": [13, 16, 29], "wh08": [13, 42], "what": [0, 4, 6, 8, 13, 18], "whatsoev": 13, "when": [0, 3, 4, 5, 11, 13, 21, 22, 24, 30, 31, 32, 38, 39], "where": [3, 4, 5, 10, 11, 13, 16, 22, 24, 26, 29, 30, 34, 38, 39], "wherea": [4, 10, 13, 26], "wherev": 13, "whether": [13, 19, 22, 23], "which": [3, 4, 5, 10, 11, 13, 16, 22, 25, 26, 28, 29, 31, 32, 38, 39], "while": [16, 22, 28, 38, 39], "white": [28, 42], "whiteros": 42, "who": 26, "whom": 19, "why": [4, 13], "wide": [13, 16, 21], "widehat": 38, "width": [13, 17], "width_min": [17, 32], "wiki": 13, "william": 42, "winter": 13, "within": [13, 16], "without": [16, 19, 26, 38], "wkm94": [13, 42], "wkmh95": [13, 42], "wolf": 42, "wong": [22, 26, 42], "word": 10, "work": [4, 13, 16, 17, 26, 28, 30, 41], "worker": 13, "workshop": [17, 20], "worldwid": 13, "worlei": [13, 42], "would": [5, 8, 10, 38], "write": [8, 26, 34, 39, 40], "write_wavefunction_flag": [17, 32], "written": [5, 13, 16, 22, 24, 38, 39], "wrote": 4, "ws08": [13, 42], "wsch07": [13, 42], "wsd": [13, 42], "wsm": [13, 28, 42], "wukitch": 42, "www": 2, "x": [30, 32, 34, 38, 42], "x1": [13, 42], "x_": 24, "x_a": [22, 24], "xcode": 2, "xd1": [13, 42], "xi": [5, 6, 22, 23, 24], "xi_i": 5, "xnu_factor": [17, 32], "xnu_model": [17, 32], "xnue": [17, 32], "xquartz": 2, "xt3": [13, 42], "xwell_sa": [17, 32], "y": [30, 32, 34, 42], "yann": 28, "year": [11, 13, 28], "yearli": 17, "yield": 13, "york": 42, "you": [0, 4, 8, 17, 30], "your": [0, 8, 9, 17, 41], "z": [10, 22, 34, 38, 39, 42], "z0": 22, "z_": [6, 17, 18, 23, 24, 30, 32, 38, 39], "z_0": [5, 10, 18, 22], "z_1": [5, 22], "z_2": [5, 22], "z_3": [5, 22], "z_a": 26, "z_c": 16, "z_e": 38, "z_eff": 18, "z_i": 38, "zeeland": 42, "zeff": [17, 32], "zeng": 42, "zero": [5, 13, 22, 30, 32, 39], "zeroth": [22, 24, 26, 39], "zeta": [6, 10, 17, 18, 23, 30, 32], "zeta_loc": [17, 32], "zf": 30, "zf_test_mod": 6, "zhang": 42, "zhu": 42, "zmag": [6, 10, 18], "zmag_over_a": [10, 17, 23], "zmaj_loc": [17, 32], "zonal": [5, 6, 13, 30, 42], "zoom": 41, "zs_1": [17, 32], "\u03b1": 42}, "titles": ["Build from sources", "Ubuntu/Mint", "OSX Sonoma", "CGYRO", "FAQ", "Alphabetical list for input.cgyro", "Tabular list for input.cgyro", "CGYRO output files", "Running Cases", "Download and user agreement", "FLUX-SURFACE GEOMETRY", "GYRO", "Gallery of classic GYRO images (circa 2003)", "Gyrokinetic Simulation in the 2000s", "Alphabetical list for input.gyro", "Tabular list for input.gyro", "GYRO verification and validation (pre 2010)", "The General Atomics GACODE Suite", "input.gacode", "GACODE License", "Miscellaneous", "NEO", "Alphabetical list for input.neo", "Parameters for input.neo", "NEO Output Files", "profiles_gen", "PLASMA ROTATION THEORY", "Environment setup", "DIII-D L-mode shortfall", "TGLF", "Alphabetical list for input.tglf", "Alphabetical list for out.tglf files", "Table of inputs and outputs", "TGYRO", "Equations solved in TGYRO", "OUTPUT", "PLOT", "Scenarios and connection to energy sources", "TGYRO solver algorithm", "input.tgyro Alphabetical List", "input.tgyro Tabular List", "CGYRO Workshop 2022", "References"], "titleterms": {"": [5, 32], "2000": 13, "2001": 16, "2002": 13, "2003": [12, 13], "2004": [13, 16], "2005": 13, "2006": [13, 16], "2007": 13, "2008": 13, "2009": [13, 16], "2010": 16, "2013": 28, "2022": 41, "25": 28, "A": 13, "BES": 16, "The": [13, 17, 26], "_scale": 22, "abstract": 16, "access": 9, "acknowledg": 28, "ad": 28, "adiabat": 16, "adiabatic_elec": 30, "advanc": 6, "against": 29, "agenda": 41, "agreement": 9, "algorithm": 38, "alpha": 32, "alpha_": 30, "alpha_mach": 30, "alpha_p": 30, "alpha_quench": 30, "alpha_sa": 30, "alpha_zf": 30, "alphabet": [5, 14, 22, 30, 31, 39], "amp": 5, "amp0": 5, "amp_phi_n": 14, "aniso_model_": 22, "anomal": 16, "appropri": [9, 42], "ar": 13, "as_1": 30, "ask": 3, "atom": 17, "b_model_sa": 30, "balanc": 26, "base": 16, "basi": 26, "batch": 8, "benchmark": 28, "beta": 30, "beta_star": 22, "beta_star_scal": 5, "betae_unit": 5, "betae_unit_scal": 5, "bound": 10, "box": 10, "box_siz": 5, "btccw": [5, 22], "build": 0, "c": 16, "can": 13, "case": [3, 8, 16], "cer": 16, "cgyro": [3, 5, 6, 7, 41], "chang": 32, "circa": 12, "classic": 12, "code": [0, 3, 9, 13, 17, 28], "coeffici": 16, "collis": 6, "collision_ene_diffus": 5, "collision_ene_restor": 5, "collision_field_model": 5, "collision_full_strip": 5, "collision_kperp": 5, "collision_model": [5, 22], "collision_mom_restor": 5, "collision_precision_mod": 5, "command": 8, "comment": 38, "common": 7, "comparison": 16, "compression": 16, "comput": [13, 38], "concept": 0, "connect": [26, 34, 37], "consider": 26, "consist": 26, "control": [6, 15, 32, 40], "coordin": 10, "correctli": 13, "cpu": 27, "cross": 28, "cyclon": 16, "d": [16, 28], "data": [3, 7, 16, 21, 26, 29, 33], "deby": 30, "debye_factor": 30, "delta": [5, 22], "delta_loc": 30, "delta_t": 5, "delta_t_method": 5, "dens_": [5, 22], "densiti": 34, "density_spectrum": 31, "depend": [7, 23], "descript": 24, "design": 13, "detail": 24, "diagnost": 16, "differ": 13, "diii": [16, 28], "discret": 38, "dissip": 6, "dlnndr_": [5, 22], "dlnndre_ad": 22, "dlntdr_": [5, 22], "dlntdr_para_": 22, "dlntdr_perp_": 22, "dlntdre_ad": 22, "doppler": 16, "download": 9, "dphi0dr": 22, "dramat": 13, "drmajdx_loc": 30, "drmindx_loc": 30, "dzmag": 5, "dzmajdx_loc": 30, "e_max": 5, "effect": [10, 13, 23], "eigenvalue_spectrum": 31, "electromagnet": 16, "electron": 16, "energet": 16, "energi": [34, 37], "environ": [0, 27], "epar0": 22, "epar0_spitz": 22, "equat": [33, 34], "equil": 24, "equilibria": 10, "equilibrium": [17, 23], "equilibrium_model": [5, 22], "error_tol": 5, "etg_factor": 30, "eulerian": 13, "exampl": 8, "exp_norm": 24, "experiment": [24, 26, 28, 29], "extra": 23, "f": 24, "faq": 4, "fast": 16, "feedback": 40, "field": [6, 10], "field_print_flag": 5, "field_spectrum": 31, "file": [0, 6, 7, 18, 24, 31, 32], "filter": 30, "find_width": 30, "flux": [10, 34], "forc": 26, "formal": 26, "formul": 38, "freq_tol": 5, "frequent": 3, "from": [0, 13], "ft_model_sa": 30, "full": 13, "ga": 27, "gacod": [17, 18, 19], "galleri": 12, "gamma_": 5, "gamma_e_scal": 5, "gamma_p": 5, "gamma_p_scal": 5, "gaussian": 32, "gchat": 30, "gener": [17, 23], "geo_ni": 22, "geo_yin": 22, "geometri": [6, 10, 17, 23, 32], "geometry_flag": 30, "gflux_print_flag": 5, "ghat": 30, "gkw": 28, "global": [6, 13, 16], "gpu": 27, "gpu_bigmem_flag": 5, "gradb_factor": 30, "gradient": 16, "grid": [24, 38], "gyro": [11, 12, 14, 15, 16, 28], "gyrobohm": 13, "gyrokinet": [13, 16], "h_print_flag": 5, "have": 13, "high": 40, "histori": [13, 25], "ibranch": 30, "iflux": 30, "imag": 12, "impur": 16, "inadequ": 13, "independ": 7, "input": [3, 5, 6, 14, 15, 18, 21, 22, 23, 26, 30, 32, 33, 39, 40], "intensity_spectrum": 31, "interfac": [23, 33], "ipccw": [5, 22], "iter": 40, "jacobian": 38, "jan": 28, "kappa": [5, 22], "kappa_loc": 30, "kei": 28, "kx0_loc": 30, "ky": [5, 30], "kygrid_model": 30, "l": 28, "lambda_deby": 5, "lambda_debye_scal": 5, "legend": 13, "level": 40, "licens": 19, "limit": [13, 16], "line": 8, "link": [11, 21, 29, 33], "linsker_factor": 30, "list": [5, 6, 14, 15, 22, 30, 31, 39, 40], "loc_betae_scal": 39, "loc_dx": 39, "loc_dx_max": 39, "loc_er_feedback_flag": 39, "loc_evolve_grad_only_flag": 39, "loc_he_feedback_flag": 39, "loc_lock_profile_flag": 39, "loc_relax": 39, "loc_residual_method": 39, "loc_restart_flag": 39, "loc_scenario": 39, "loc_te_feedback_flag": 39, "loc_ti_feedback_flag": 39, "local": [13, 16], "mach": 5, "mach_scal": 5, "magnet": 10, "mass_": [5, 22], "mass_1": 30, "match": 16, "max_tim": 5, "method": 10, "miller": 32, "mint": 1, "miscellan": 20, "mod": 16, "mode": 28, "model": [23, 29], "moment_print_flag": 5, "momentum": 34, "mpi_rank_ord": 5, "n": 30, "n_energi": [5, 22], "n_field": 5, "n_global": 5, "n_radial": [5, 22], "n_speci": [5, 22], "n_theta": [5, 22], "n_toroid": 5, "n_xi": [5, 22], "nbasis_max": 30, "nbasis_min": 30, "ne_ad": 22, "necessari": 13, "neo": [21, 22, 23, 24], "nersc": 27, "new_eikon": 30, "nky": 30, "nmode": 30, "nonaxisymmetr": 23, "nonlinear": 13, "nonlinear_flag": 5, "normal": [3, 7, 21], "nsts_crossphase_spectrum": 31, "nu_1": 22, "nu_e": 5, "nu_glob": 5, "numer": [6, 23], "nup_alpha": 5, "nup_radi": 5, "nup_theta": 5, "nwidth": 30, "nxgrid": 30, "omega": 27, "omega_rot": 22, "omega_rot_deriv": 22, "openbla": 0, "orient": 10, "osx": 2, "out": [24, 31], "output": [3, 6, 7, 21, 24, 32, 33, 35], "overview": [3, 11, 18, 25, 28, 29, 33], "own": 32, "p_prime_loc": 30, "parallel": 13, "paramet": [6, 10, 15, 23, 26, 32, 40], "park": 30, "particl": 16, "pci": 16, "perlmutt": 27, "perspect": 13, "perturb": 16, "phi": 24, "physic": [6, 17, 23, 26, 40], "plasma": [6, 17, 23, 26], "platform": 0, "plot": [3, 33, 36], "power": 34, "pre": 16, "prehistori": 13, "prerequisit": 0, "present": 28, "print_step": 5, "profil": [17, 23, 24, 26, 28, 40], "profile_dlnndr_": 22, "profile_dlntdr_": 22, "profile_equilibrium_model": 22, "profile_erad0_model": 22, "profile_model": [5, 22], "profiles_gen": 25, "public": [13, 28], "px0": 5, "python": 33, "q": [5, 22], "q_loc": 30, "q_prime_loc": 30, "q_sa": 30, "ql_flux_spectrum": 31, "quasineutral_flag": 5, "question": 3, "quick": [8, 11, 21, 29, 33], "refer": [9, 29, 42], "reflectomet": 16, "regard": 38, "relat": 6, "repositori": 9, "resolut": [6, 13, 23], "restart": 7, "restart_step": 5, "result": [16, 28], "rho_star": 22, "risk": 32, "rlns_1": 30, "rlts_1": 30, "rmaj": 5, "rmaj_loc": 30, "rmaj_over_a": 22, "rmaj_sa": 30, "rmin": 5, "rmin_loc": 30, "rmin_over_a": 22, "rmin_over_a_2": 22, "rmin_sa": 30, "rotat": [6, 17, 23, 24, 26], "rotation_model": [5, 22], "run": [3, 8, 17], "s_delta": [5, 22], "s_delta_loc": 30, "s_kappa": [5, 22], "s_kappa_loc": 30, "s_zeta": [5, 22], "s_zeta_loc": 30, "s_zmag": 22, "sat_geo_spectrum": 31, "sat_rul": 30, "satur": 29, "scalar_saturation_paramet": 31, "scenario": 37, "scienc": 13, "setup": 27, "shape": 6, "shape_cos0": [5, 22], "shape_cos1": [5, 22], "shape_cos2": [5, 22], "shape_cos3": [5, 22], "shape_s_cos0": [5, 22], "shape_s_cos1": [5, 22], "shape_s_cos2": [5, 22], "shape_s_cos3": [5, 22], "shape_s_sin3": [5, 22], "shape_sin3": [5, 22], "shat_sa": 30, "shear": 22, "shift": [5, 22], "shortfal": 28, "sign_bt": 30, "sign_it": 30, "silent_flag": [5, 22], "sim_model": 22, "simul": [13, 16], "softwar": 17, "solut": [33, 38], "solv": 34, "solver": 38, "some": 38, "sonic": 26, "sonoma": 2, "sourc": [0, 3, 9, 34, 37], "space": 13, "speci": [6, 23, 24, 32, 40], "spectral": 6, "spectral_shift": 31, "spitzer_model": 22, "standard": 24, "start": 8, "step": 6, "strategi": 38, "structur": 18, "studi": 16, "submiss": 8, "subroutin": [23, 24], "suit": 17, "sum_flux_spectrum": 31, "supercomput": 16, "supra": 16, "surfac": 10, "sweep": 16, "synopsi": 13, "synthet": 16, "tabl": [10, 32], "tabular": [6, 15, 40], "taus_1": 30, "te_ad": 22, "temp_": [5, 22], "temp_para_": 22, "temp_perp_": 22, "temperatur": 16, "temperature_spectrum": 31, "tglf": [29, 30, 31, 32], "tgyro": [33, 34, 38, 39, 40], "tgyro_den_method": 39, "tgyro_iteration_method": 39, "tgyro_mod": 39, "tgyro_neo_method": 39, "tgyro_relax_iter": 39, "tgyro_therm_flag": 39, "tgyro_write_profiles_flag": 39, "theoret": 26, "theori": [24, 26], "theory_nclass": 24, "theta0_sa": 30, "theta_plot": 5, "theta_trap": 30, "threed_exb_dphi0dr": 22, "threed_exb_model": 22, "threed_model": 22, "time": [6, 7], "tokamak": 16, "tore": 16, "toru": 13, "transport": [13, 16, 24, 33, 34], "transport_exp": 24, "transport_flux": 24, "transport_gv": 24, "turbul": 16, "ubuntu": 1, "udsymmetry_flag": 5, "ul1": 13, "ul2": 13, "ul3": 13, "ul4": 13, "unit": [30, 38], "up_alpha": 5, "up_radi": 5, "up_theta": 5, "upwind_single_flag": 5, "urban": 13, "usag": 8, "use_bisect": 30, "use_bp": 30, "use_bpar": 30, "use_inboard_detrap": 30, "use_mhd_rul": 30, "use_transport_model": 30, "user": [9, 13], "valid": [16, 29], "variabl": 0, "vector": 32, "vel": 24, "vel_fouri": 24, "veloc": 13, "velocity_ord": 5, "verif": 16, "vexb": 30, "vexb_shear": 30, "vpar_1": 30, "vpar_model": 30, "vpar_shear_1": 30, "vpar_shear_model": 30, "wd_zero": 30, "width": [30, 32], "width_min": 30, "workshop": 41, "write_wavefunction_flag": 30, "xnu_factor": 30, "xnu_model": 30, "xnue": 30, "xwell_sa": 30, "yearli": 13, "your": 32, "z_": [5, 22], "z_eff": 5, "z_eff_method": 5, "zeff": 30, "zeta": [5, 22], "zeta_loc": 30, "zf_test_mod": 5, "zmag": 5, "zmag_over_a": 22, "zmaj_loc": 30, "zs_1": 30}})
\ No newline at end of file
+Search.setIndex({"alltitles": {"2002": [[13, "id20"]], "2003": [[13, "id22"]], "2004": [[13, "id25"]], "2005": [[13, "id33"]], "2006": [[13, "id40"]], "2007": [[13, "id49"]], "2008": [[13, "id59"]], "2009": [[13, "id63"]], "A Computational Science and User Perspective": [[13, "a-computational-science-and-user-perspective"]], "ADIABATIC_ELEC": [[30, "adiabatic-elec"]], "AGENDA": [[41, "agenda"]], "ALPHA_E": [[30, "alpha-e"]], "ALPHA_MACH": [[30, "alpha-mach"]], "ALPHA_P": [[30, "alpha-p"]], "ALPHA_QUENCH": [[30, "alpha-quench"]], "ALPHA_SA": [[30, "alpha-sa"]], "ALPHA_ZF": [[30, "alpha-zf"]], "AMP": [[5, "amp"]], "AMP0": [[5, "amp0"]], "AMP_PHI_N": [[14, "amp-phi-n"]], "ANISO_MODEL_*": [[22, "aniso-model"]], "AS_1": [[30, "as-1"]], "Acknowledgments": [[28, "acknowledgments"]], "Advanced shape parameters": [[6, "id2"]], "Alphabetical list for input.cgyro": [[5, "alphabetical-list-for-input-cgyro"]], "Alphabetical list for input.gyro": [[14, "alphabetical-list-for-input-gyro"]], "Alphabetical list for input.neo": [[22, "alphabetical-list-for-input-neo"]], "Alphabetical list for input.tglf": [[30, "alphabetical-list-for-input-tglf"]], "Alphabetical list for out.tglf files": [[31, "alphabetical-list-for-out-tglf-files"]], "Anomalous Transport in the DIII-D Tokamak Matched by Supercomputer Simulation": [[16, "anomalous-transport-in-the-diii-d-tokamak-matched-by-supercomputer-simulation"]], "Appropriate References": [[9, "id6"], [42, "id144"]], "BETAE": [[30, "betae"]], "BETAE_UNIT": [[5, "betae-unit"]], "BETAE_UNIT_SCALE": [[5, "betae-unit-scale"]], "BETA_STAR": [[22, "beta-star"]], "BETA_STAR_SCALE": [[5, "beta-star-scale"]], "BOX_SIZE": [[5, "box-size"]], "BTCCW": [[5, "btccw"], [22, "btccw"]], "B_MODEL_SA": [[30, "b-model-sa"]], "Batch submission": [[8, "batch-submission"]], "Bounding-box method": [[10, "bounding-box-method"]], "Build on your laptop": [[0, "build-on-your-laptop"]], "Building": [[0, "building"]], "CGYRO": [[3, "cgyro"]], "CGYRO Normalization": [[3, "id7"]], "CGYRO Workshop 2022": [[41, "cgyro-workshop-2022"]], "CGYRO output files": [[7, "cgyro-output-files"]], "COLLISION_ENE_DIFFUSION": [[5, "collision-ene-diffusion"]], "COLLISION_ENE_RESTORE": [[5, "collision-ene-restore"]], "COLLISION_FIELD_MODEL": [[5, "collision-field-model"]], "COLLISION_FULL_STRIPES": [[5, "collision-full-stripes"]], "COLLISION_KPERP": [[5, "collision-kperp"]], "COLLISION_MODEL": [[5, "collision-model"], [22, "collision-model"]], "COLLISION_MOM_RESTORE": [[5, "collision-mom-restore"]], "COLLISION_PRECISION_MODE": [[5, "collision-precision-mode"]], "Change-at-your-own-risk parameters": [[32, "id6"]], "Codes": [[17, null]], "Collisions": [[6, "id9"]], "Command-line usage": [[8, "command-line-usage"]], "Common time-dependent output": [[7, "id2"]], "Comparison of GYRO simulations with fast-sweeping and Doppler reflectometer data in Tore Supra": [[16, "comparison-of-gyro-simulations-with-fast-sweeping-and-doppler-reflectometer-data-in-tore-supra"]], "Comparison of GYRO synthetic diagnostic results with C-Mod PCI data": [[16, "comparison-of-gyro-synthetic-diagnostic-results-with-c-mod-pci-data"]], "Comparison of GYRO synthetic diagnostic results with DIII-D BES and CER data": [[16, "comparison-of-gyro-synthetic-diagnostic-results-with-diii-d-bes-and-cer-data"]], "Compressional Electromagnetic Perturbations (2010)": [[16, "compressional-electromagnetic-perturbations-2010"]], "Computation of the Jacobian": [[38, "computation-of-the-jacobian"]], "Concept of platform files": [[0, "concept-of-platform-files"]], "Connection of Fluxes to Powers": [[34, "connection-of-fluxes-to-powers"]], "Connection to experimental data": [[26, "connection-to-experimental-data"]], "Consistency with force balance": [[26, "consistency-with-force-balance"]], "Control": [[32, "id1"]], "Control parameters": [[6, "id3"], [15, "id1"]], "Coordinates": [[10, "coordinates"]], "Cross-code benchmarking results": [[28, "cross-code-benchmarking-results"]], "Cyclone Base Case with Adiabatic Electrons (2001)": [[16, "cyclone-base-case-with-adiabatic-electrons-2001"]], "DEBYE": [[30, "debye"]], "DEBYE_FACTOR": [[30, "debye-factor"]], "DELTA": [[5, "delta"], [22, "delta"]], "DELTA_LOC": [[30, "delta-loc"]], "DELTA_T": [[5, "delta-t"]], "DELTA_T_METHOD": [[5, "delta-t-method"]], "DENS_*": [[5, "dens"], [22, "dens"]], "DIII-D L-mode shortfall": [[28, "diii-d-l-mode-shortfall"]], "DLNNDRE_ADE": [[22, "dlnndre-ade"]], "DLNNDR_*": [[5, "dlnndr"], [22, "dlnndr"]], "DLNTDRE_ADE": [[22, "dlntdre-ade"]], "DLNTDR_*": [[5, "dlntdr"], [22, "dlntdr"]], "DLNTDR_PARA_*": [[22, "dlntdr-para"]], "DLNTDR_PERP_*": [[22, "dlntdr-perp"]], "DPHI0DR": [[22, "dphi0dr"]], "DRMAJDX_LOC": [[30, "drmajdx-loc"]], "DRMINDX_LOC": [[30, "drmindx-loc"]], "DZMAG": [[5, "dzmag"]], "DZMAJDX_LOC": [[30, "dzmajdx-loc"]], "Data input": [[3, "data-input"], [21, "data-input"], [33, "data-input"]], "Data output": [[21, "data-output"]], "Data output and plotting": [[3, "data-output-and-plotting"]], "Data output, python interface, and plotting": [[33, "data-output-python-interface-and-plotting"]], "Density Transport": [[34, "density-transport"]], "Density fluxes and sources": [[34, "id2"]], "Design History": [[13, "design-history"]], "Detailed description of NEO output files": [[24, "detailed-description-of-neo-output-files"]], "Download and user agreement": [[9, "download-and-user-agreement"]], "EPAR0": [[22, "epar0"]], "EPAR0_SPITZER": [[22, "epar0-spitzer"]], "EQUILIBRIUM_MODEL": [[5, "equilibrium-model"], [22, "equilibrium-model"]], "ERROR_TOL": [[5, "error-tol"]], "ETG_FACTOR": [[30, "etg-factor"]], "EXPERIMENTAL profiles": [[28, "experimental-profiles"]], "E_MAX": [[5, "e-max"]], "Effective field": [[10, "effective-field"]], "Electron Temperature Gradient Turbulence (2006)": [[16, "electron-temperature-gradient-turbulence-2006"]], "Energetic particle transport coefficients (2009)": [[16, "energetic-particle-transport-coefficients-2009"]], "Energy Transport": [[34, "energy-transport"]], "Energy fluxes and sources": [[34, "id3"]], "Environment variables": [[0, "environment-variables"]], "Equations solved in TGYRO": [[34, "equations-solved-in-tgyro"]], "Equilibria": [[10, "equilibria"]], "Equilibrium and Profiles": [[17, "equilibrium-and-profiles"]], "Experimental profiles output files": [[24, "experimental-profiles-output-files"]], "Extra subroutine interface parameters": [[23, "extra-subroutine-interface-parameters"]], "FAQ": [[4, "faq"]], "FIELD_PRINT_FLAG": [[5, "field-print-flag"]], "FILTER": [[30, "filter"]], "FIND_WIDTH": [[30, "find-width"]], "FLUX-SURFACE GEOMETRY": [[10, "flux-surface-geometry"]], "FREQ_TOL": [[5, "freq-tol"]], "FT_MODEL_SA": [[30, "ft-model-sa"]], "Fields": [[6, "id4"]], "File structure": [[18, "id3"]], "First step": [[0, "first-step"]], "Formulation": [[38, "formulation"]], "Formulation on a discrete grid": [[38, "formulation-on-a-discrete-grid"]], "Frequently Asked Questions": [[3, "frequently-asked-questions"]], "GA OMEGA": [[27, "ga-omega"]], "GACODE License": [[19, "gacode-license"]], "GAMMA_E": [[5, "gamma-e"]], "GAMMA_E_SCALE": [[5, "gamma-e-scale"]], "GAMMA_P": [[5, "gamma-p"]], "GAMMA_P_SCALE": [[5, "gamma-p-scale"]], "GCHAT": [[30, "gchat"]], "GEOMETRY_FLAG": [[30, "geometry-flag"]], "GEO_NY": [[22, "geo-ny"]], "GEO_YIN": [[22, "geo-yin"]], "GFLUX_PRINT_FLAG": [[5, "gflux-print-flag"]], "GHAT": [[30, "ghat"]], "GKW results (added 25-jan-2013)": [[28, "gkw-results-added-25-jan-2013"]], "GPU_BIGMEM_FLAG": [[5, "gpu-bigmem-flag"]], "GRADB_FACTOR": [[30, "gradb-factor"]], "GYRO": [[11, "gyro"]], "GYRO Validation Abstracts": [[16, "gyro-validation-abstracts"]], "GYRO results": [[28, "gyro-results"]], "GYRO verification and validation (pre 2010)": [[16, "gyro-verification-and-validation-pre-2010"]], "Gallery of classic GYRO images (circa 2003)": [[12, "gallery-of-classic-gyro-images-circa-2003"]], "Gaussian width parameters": [[32, "id3"]], "General models": [[23, "id3"]], "Geometry": [[17, "geometry"]], "Global-spectral parameters": [[6, "id11"]], "Gyrokinetic Simulation in the 2000s": [[13, "gyrokinetic-simulation-in-the-2000s"]], "Gyrokinetic Simulation of Impurities (2004)": [[16, "gyrokinetic-simulation-of-impurities-2004"]], "H_PRINT_FLAG": [[5, "h-print-flag"]], "High-level control": [[40, "id1"]], "History and Overview": [[25, "history-and-overview"]], "IBRANCH": [[30, "ibranch"]], "IFLUX": [[30, "iflux"]], "IPCCW": [[5, "ipccw"], [22, "ipccw"]], "Input parameters": [[26, "input-parameters"]], "Iteration control": [[40, "id2"]], "KAPPA": [[5, "kappa"], [22, "kappa"]], "KAPPA_LOC": [[30, "kappa-loc"]], "KX0_LOC": [[30, "kx0-loc"]], "KY": [[5, "ky"], [30, "ky"]], "KYGRID_MODEL": [[30, "kygrid-model"]], "Key publications and presentations": [[28, "key-publications-and-presentations"]], "LAMBDA_DEBYE": [[5, "lambda-debye"]], "LAMBDA_DEBYE_SCALE": [[5, "lambda-debye-scale"]], "LINSKER_FACTOR": [[30, "linsker-factor"]], "LOC_BETAE_SCALE": [[39, "loc-betae-scale"]], "LOC_DX": [[39, "loc-dx"]], "LOC_DX_MAX": [[39, "loc-dx-max"]], "LOC_ER_FEEDBACK_FLAG": [[39, "loc-er-feedback-flag"]], "LOC_EVOLVE_GRAD_ONLY_FLAG": [[39, "loc-evolve-grad-only-flag"]], "LOC_HE_FEEDBACK_FLAG": [[39, "loc-he-feedback-flag"]], "LOC_LOCK_PROFILE_FLAG": [[39, "loc-lock-profile-flag"]], "LOC_RELAX": [[39, "loc-relax"]], "LOC_RESIDUAL_METHOD": [[39, "loc-residual-method"]], "LOC_RESTART_FLAG": [[39, "loc-restart-flag"]], "LOC_SCENARIO": [[39, "loc-scenario"]], "LOC_TE_FEEDBACK_FLAG": [[39, "loc-te-feedback-flag"]], "LOC_TI_FEEDBACK_FLAG": [[39, "loc-ti-feedback-flag"]], "Local limit of Global Simulations (2004)": [[16, "local-limit-of-global-simulations-2004"]], "MACH": [[5, "mach"]], "MACH_SCALE": [[5, "mach-scale"]], "MASS_*": [[5, "mass"], [22, "mass"]], "MASS_1": [[30, "mass-1"]], "MAX_TIME": [[5, "max-time"]], "MOMENT_PRINT_FLAG": [[5, "moment-print-flag"]], "MPI_RANK_ORDER": [[5, "mpi-rank-order"]], "Magnetic field orientation": [[10, "magnetic-field-orientation"]], "Miller geometry parameters": [[32, "id4"]], "Miscellaneous": [[20, "miscellaneous"]], "Momentum Transport": [[34, "momentum-transport"]], "Momentum fluxes and sources": [[34, "id4"]], "NBASIS_MAX": [[30, "nbasis-max"]], "NBASIS_MIN": [[30, "nbasis-min"]], "NEO": [[21, "neo"]], "NEO Output Files": [[24, "neo-output-files"]], "NERSC PERLMUTTER (CPU)": [[27, "nersc-perlmutter-cpu"]], "NERSC PERLMUTTER (GPU)": [[27, "nersc-perlmutter-gpu"]], "NEW_EIKONAL": [[30, "new-eikonal"]], "NE_ADE": [[22, "ne-ade"]], "NKY": [[30, "nky"]], "NMODES": [[30, "nmodes"]], "NONLINEAR_FLAG": [[5, "nonlinear-flag"]], "NS": [[30, "ns"]], "NUP_ALPHA": [[5, "nup-alpha"]], "NUP_RADIAL": [[5, "nup-radial"]], "NUP_THETA": [[5, "nup-theta"]], "NU_1": [[22, "nu-1"]], "NU_EE": [[5, "nu-ee"]], "NU_GLOBAL": [[5, "nu-global"]], "NWIDTH": [[30, "nwidth"]], "NXGRID": [[30, "nxgrid"]], "N_ENERGY": [[5, "n-energy"], [22, "n-energy"]], "N_FIELD": [[5, "n-field"]], "N_GLOBAL": [[5, "n-global"]], "N_RADIAL": [[5, "n-radial"], [22, "n-radial"]], "N_SPECIES": [[5, "n-species"], [22, "n-species"]], "N_THETA": [[5, "n-theta"], [22, "n-theta"]], "N_TOROIDAL": [[5, "n-toroidal"]], "N_XI": [[5, "n-xi"], [22, "n-xi"]], "Nonaxisymmetric effects": [[23, "id6"]], "Normalization": [[3, "normalization"], [21, "normalization"]], "Numerical Dissipation": [[6, "id6"]], "Numerical Resolution": [[6, "id5"]], "Numerical resolution": [[23, "id1"]], "OMEGA_ROT": [[22, "omega-rot"]], "OMEGA_ROT_DERIV": [[22, "omega-rot-deriv"]], "OSX Sonoma": [[2, "osx-sonoma"]], "OUTPUT": [[35, "output"]], "OpenBLAS": [[0, "openblas"]], "Output Normalization": [[7, "output-normalization"]], "Output file control": [[6, "id12"]], "Overview": [[3, "overview"], [11, "overview"], [18, "overview"], [28, "overview"], [29, "overview"], [33, "overview"]], "PARK": [[30, "park"]], "PLASMA ROTATION THEORY": [[26, "plasma-rotation-theory"]], "PLOT": [[36, "plot"]], "PRINT_STEP": [[5, "print-step"]], "PROFILE_DLNNDR_*_SCALE": [[22, "profile-dlnndr-scale"]], "PROFILE_DLNTDR_*_SCALE": [[22, "profile-dlntdr-scale"]], "PROFILE_EQUILIBRIUM_MODEL": [[22, "profile-equilibrium-model"]], "PROFILE_ERAD0_MODEL": [[22, "profile-erad0-model"]], "PROFILE_MODEL": [[5, "profile-model"], [22, "profile-model"]], "PX0": [[5, "px0"]], "P_PRIME_LOC": [[30, "p-prime-loc"]], "Parameters for input.neo": [[23, "parameters-for-input-neo"]], "Physical considerations": [[26, "physical-considerations"]], "Physics": [[17, null]], "Physics Control": [[40, "id4"]], "Plasma Rotation": [[17, "plasma-rotation"]], "Plasma equilibrium/geometry": [[23, "id2"]], "Plasma shape/geometry": [[6, "id1"]], "Prebuilt Environments": [[27, "prebuilt-environments"]], "Prehistory": [[13, "prehistory"]], "Profile Feedback Control": [[40, "id3"]], "Profile models": [[23, "id4"]], "Q": [[5, "q"], [22, "q"]], "QL_flux_spectrum": [[31, "ql-flux-spectrum"]], "QUASINEUTRAL_FLAG": [[5, "quasineutral-flag"]], "Q_LOC": [[30, "q-loc"]], "Q_PRIME_LOC": [[30, "q-prime-loc"]], "Q_SA": [[30, "q-sa"]], "Quick links": [[11, "quick-links"], [21, "quick-links"], [29, "quick-links"], [33, "quick-links"]], "Quick-start example": [[8, "quick-start-example"]], "RESTART_STEP": [[5, "restart-step"]], "RHO_STAR": [[22, "rho-star"]], "RLNS_1": [[30, "rlns-1"]], "RLTS_1": [[30, "rlts-1"]], "RMAJ": [[5, "rmaj"]], "RMAJ_LOC": [[30, "rmaj-loc"]], "RMAJ_OVER_A": [[22, "rmaj-over-a"]], "RMAJ_SA": [[30, "rmaj-sa"]], "RMIN": [[5, "rmin"]], "RMIN_LOC": [[30, "rmin-loc"]], "RMIN_OVER_A": [[22, "rmin-over-a"]], "RMIN_OVER_A_2": [[22, "rmin-over-a-2"]], "RMIN_SA": [[30, "rmin-sa"]], "ROTATION_MODEL": [[5, "rotation-model"], [22, "rotation-model"]], "References": [[42, "references"]], "References: TGLF saturation models": [[29, "id9"]], "References: TGLF validation against experimental data": [[29, "id10"]], "Repository access": [[9, "repository-access"]], "Restart data": [[7, "id3"]], "Rotation output files": [[24, "rotation-output-files"]], "Rotation physics": [[6, "id10"], [23, "id5"]], "Running Cases": [[3, "running-cases"], [8, "running-cases"]], "Running GACODE": [[17, "running-gacode"]], "S": [[5, "s"]], "SAT_RULE": [[30, "sat-rule"]], "SHAPE_COS0": [[5, "shape-cos0"], [22, "shape-cos0"]], "SHAPE_COS1": [[5, "shape-cos1"], [22, "shape-cos1"]], "SHAPE_COS2": [[5, "shape-cos2"], [22, "shape-cos2"]], "SHAPE_COS3": [[5, "shape-cos3"], [22, "shape-cos3"]], "SHAPE_SIN3": [[5, "shape-sin3"], [22, "shape-sin3"]], "SHAPE_S_COS0": [[5, "shape-s-cos0"], [22, "shape-s-cos0"]], "SHAPE_S_COS1": [[5, "shape-s-cos1"], [22, "shape-s-cos1"]], "SHAPE_S_COS2": [[5, "shape-s-cos2"], [22, "shape-s-cos2"]], "SHAPE_S_COS3": [[5, "shape-s-cos3"], [22, "shape-s-cos3"]], "SHAPE_S_SIN3": [[5, "shape-s-sin3"], [22, "shape-s-sin3"]], "SHAT_SA": [[30, "shat-sa"]], "SHEAR": [[22, "shear"]], "SHIFT": [[5, "shift"], [22, "shift"]], "SIGN_BT": [[30, "sign-bt"]], "SIGN_IT": [[30, "sign-it"]], "SILENT_FLAG": [[5, "silent-flag"], [22, "silent-flag"]], "SIM_MODEL": [[22, "sim-model"]], "SPITZER_MODEL": [[22, "spitzer-model"]], "S_DELTA": [[5, "s-delta"], [22, "s-delta"]], "S_DELTA_LOC": [[30, "s-delta-loc"]], "S_KAPPA": [[5, "s-kappa"], [22, "s-kappa"]], "S_KAPPA_LOC": [[30, "s-kappa-loc"]], "S_ZETA": [[5, "s-zeta"], [22, "s-zeta"]], "S_ZETA_LOC": [[30, "s-zeta-loc"]], "S_ZMAG": [[22, "s-zmag"]], "Scenarios and connection to energy sources": [[37, "scenarios-and-connection-to-energy-sources"]], "Software": [[17, null]], "Solution strategy": [[38, "solution-strategy"]], "Some comments regarding units": [[38, "some-comments-regarding-units"]], "Sonic rotation formalism": [[26, "sonic-rotation-formalism"]], "Source Code": [[3, "source-code"]], "Source code": [[0, "source-code"], [9, "source-code"]], "Species Parameters": [[40, "id5"]], "Species Vectors": [[32, "id2"]], "Species-dependent parameters": [[23, "id7"]], "Species-related parameters": [[6, "id8"]], "Standard output files": [[24, "standard-output-files"]], "Subroutine output": [[24, "subroutine-output"]], "TAUS_1": [[30, "taus-1"]], "TEMP_*": [[5, "temp"], [22, "temp"]], "TEMP_PARA_*": [[22, "temp-para"]], "TEMP_PERP_*": [[22, "temp-perp"]], "TE_ADE": [[22, "te-ade"]], "TGLF": [[29, "tglf"]], "TGLF output files": [[32, "id8"]], "TGLF output parameters": [[32, "id7"]], "TGYRO": [[33, "tgyro"]], "TGYRO solver algorithm": [[38, "tgyro-solver-algorithm"]], "TGYRO_DEN_METHOD*": [[39, "tgyro-den-method"]], "TGYRO_ITERATION_METHOD": [[39, "tgyro-iteration-method"]], "TGYRO_MODE": [[39, "tgyro-mode"]], "TGYRO_NEO_METHOD": [[39, "tgyro-neo-method"]], "TGYRO_RELAX_ITERATIONS": [[39, "tgyro-relax-iterations"]], "TGYRO_THERM_FLAG*": [[39, "tgyro-therm-flag"]], "TGYRO_WRITE_PROFILES_FLAG": [[39, "tgyro-write-profiles-flag"]], "THETA0_SA": [[30, "theta0-sa"]], "THETA_PLOT": [[5, "theta-plot"]], "THETA_TRAPPED": [[30, "theta-trapped"]], "THREED_EXB_DPHI0DR": [[22, "threed-exb-dphi0dr"]], "THREED_EXB_MODEL": [[22, "threed-exb-model"]], "THREED_MODEL": [[22, "threed-model"]], "Table of geometry parameters": [[10, "table-of-geometry-parameters"]], "Table of inputs and outputs": [[32, "table-of-inputs-and-outputs"]], "Tabular list for input.cgyro": [[6, "tabular-list-for-input-cgyro"]], "Tabular list for input.gyro": [[15, "tabular-list-for-input-gyro"]], "The General Atomics GACODE Suite": [[17, "the-general-atomics-gacode-suite"]], "The rotation profile": [[26, "the-rotation-profile"]], "Theoretical basis for sonic rotation": [[26, "theoretical-basis-for-sonic-rotation"]], "Time Stepping": [[6, "id7"]], "Time-independent output": [[7, "id1"]], "Transport equations and solution": [[33, "transport-equations-and-solution"]], "UDSYMMETRY_FLAG": [[5, "udsymmetry-flag"]], "UL1: The local gyroBohm limit of global codes differs from local codes": [[13, "ul1-the-local-gyrobohm-limit-of-global-codes-differs-from-local-codes"]], "UL2: Full torus simulations are necessary to correctly compute the local transport": [[13, "ul2-full-torus-simulations-are-necessary-to-correctly-compute-the-local-transport"]], "UL3: Eulerian codes have inadequate velocity-space resolution": [[13, "ul3-eulerian-codes-have-inadequate-velocity-space-resolution"]], "UL4: The parallel nonlinearity can have a dramatic effect on the transport": [[13, "ul4-the-parallel-nonlinearity-can-have-a-dramatic-effect-on-the-transport"]], "UNITS": [[30, "units"]], "UPWIND_SINGLE_FLAG": [[5, "upwind-single-flag"]], "UP_ALPHA": [[5, "up-alpha"]], "UP_RADIAL": [[5, "up-radial"]], "UP_THETA": [[5, "up-theta"]], "USE_BISECTION": [[30, "use-bisection"]], "USE_BPAR": [[30, "use-bpar"]], "USE_BPER": [[30, "use-bper"]], "USE_INBOARD_DETRAPPED": [[30, "use-inboard-detrapped"]], "USE_MHD_RULE": [[30, "use-mhd-rule"]], "USE_TRANSPORT_MODEL": [[30, "use-transport-model"]], "Ubuntu/Mint": [[1, "ubuntu-mint"]], "Urban Legends": [[13, "urban-legends"]], "VELOCITY_ORDER": [[5, "velocity-order"]], "VEXB": [[30, "vexb"]], "VEXB_SHEAR": [[30, "vexb-shear"]], "VPAR_1": [[30, "vpar-1"]], "VPAR_MODEL": [[30, "vpar-model"]], "VPAR_SHEAR_1": [[30, "vpar-shear-1"]], "VPAR_SHEAR_MODEL": [[30, "vpar-shear-model"]], "Verification Studies": [[16, "verification-studies"]], "WD_ZERO": [[30, "wd-zero"]], "WIDTH": [[30, "width"]], "WIDTH_MIN": [[30, "width-min"]], "WRITE_WAVEFUNCTION_FLAG": [[30, "write-wavefunction-flag"]], "XNUE": [[30, "xnue"]], "XNU_FACTOR": [[30, "xnu-factor"]], "XNU_MODEL": [[30, "xnu-model"]], "XWELL_SA": [[30, "xwell-sa"]], "Yearly Publication Synopsis": [[13, "yearly-publication-synopsis"]], "ZEFF": [[30, "zeff"]], "ZETA": [[5, "zeta"], [22, "zeta"]], "ZETA_LOC": [[30, "zeta-loc"]], "ZF_TEST_MODE": [[5, "zf-test-mode"]], "ZMAG": [[5, "zmag"]], "ZMAG_OVER_A": [[22, "zmag-over-a"]], "ZMAJ_LOC": [[30, "zmaj-loc"]], "ZS_1": [[30, "zs-1"]], "Z_*": [[5, "z"], [22, "z"]], "Z_EFF": [[5, "z-eff"]], "Z_EFF_METHOD": [[5, "z-eff-method"]], "density_spectrum": [[31, "density-spectrum"]], "eigenvalue_spectrum": [[31, "eigenvalue-spectrum"]], "field_spectrum": [[31, "field-spectrum"]], "input.gacode": [[18, "input-gacode"]], "input.tgyro Alphabetical List": [[39, "input-tgyro-alphabetical-list"]], "input.tgyro Tabular List": [[40, "input-tgyro-tabular-list"]], "intensity_spectrum": [[31, "intensity-spectrum"]], "nsts_crossphase_spectrum": [[31, "nsts-crossphase-spectrum"]], "out.neo.equil": [[24, "out-neo-equil"]], "out.neo.exp_norm": [[24, "out-neo-exp-norm"]], "out.neo.f": [[24, "out-neo-f"]], "out.neo.grid": [[24, "out-neo-grid"]], "out.neo.phi": [[24, "out-neo-phi"]], "out.neo.rotation": [[24, "out-neo-rotation"]], "out.neo.species": [[24, "out-neo-species"]], "out.neo.theory": [[24, "out-neo-theory"]], "out.neo.theory_nclass": [[24, "out-neo-theory-nclass"]], "out.neo.transport": [[24, "out-neo-transport"]], "out.neo.transport_exp": [[24, "out-neo-transport-exp"]], "out.neo.transport_flux": [[24, "out-neo-transport-flux"]], "out.neo.transport_gv": [[24, "out-neo-transport-gv"]], "out.neo.vel": [[24, "out-neo-vel"]], "out.neo.vel_fourier": [[24, "out-neo-vel-fourier"]], "profiles_gen": [[25, "profiles-gen"]], "s-alpha geometry parameters": [[32, "id5"]], "sat_geo_spectrum": [[31, "sat-geo-spectrum"]], "scalar_saturation_parameters": [[31, "scalar-saturation-parameters"]], "spectral_shift": [[31, "spectral-shift"]], "sum_flux_spectrum": [[31, "sum-flux-spectrum"]], "temperature_spectrum": [[31, "temperature-spectrum"]]}, "docnames": ["build", "build/pre_linux", "build/pre_osx", "cgyro", "cgyro/FAQ", "cgyro/cgyro_list", "cgyro/cgyro_table", "cgyro/outputs", "cgyro/running_cases", "download", "geometry", "gyro", "gyro/gyro_gallery", "gyro/gyro_history", "gyro/gyro_list", "gyro/gyro_table", "gyro/gyro_vv", "index", "input_gacode", "license", "misc", "neo", "neo/neo_list", "neo/neo_table", "neo/outputs", "prgen", "rotation", "setup", "shortfall", "tglf", "tglf/tglf_list", "tglf/tglf_output_list", "tglf/tglf_table", "tgyro", "tgyro/equations", "tgyro/output", "tgyro/plot", "tgyro/scenarios", "tgyro/solver", "tgyro/tgyro_list", "tgyro/tgyro_table", "workshop", "zreferences"], "envversion": {"sphinx": 61, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinxcontrib.bibtex": 9}, "filenames": ["build.rst", "build/pre_linux.rst", "build/pre_osx.rst", "cgyro.rst", "cgyro/FAQ.rst", "cgyro/cgyro_list.rst", "cgyro/cgyro_table.rst", "cgyro/outputs.rst", "cgyro/running_cases.rst", "download.rst", "geometry.rst", "gyro.rst", "gyro/gyro_gallery.rst", "gyro/gyro_history.rst", "gyro/gyro_list.rst", "gyro/gyro_table.rst", "gyro/gyro_vv.rst", "index.rst", "input_gacode.rst", "license.rst", "misc.rst", "neo.rst", "neo/neo_list.rst", "neo/neo_table.rst", "neo/outputs.rst", "prgen.rst", "rotation.rst", "setup.rst", "shortfall.rst", "tglf.rst", "tglf/tglf_list.rst", "tglf/tglf_output_list.rst", "tglf/tglf_table.rst", "tgyro.rst", "tgyro/equations.rst", "tgyro/output.rst", "tgyro/plot.rst", "tgyro/scenarios.rst", "tgyro/solver.rst", "tgyro/tgyro_list.rst", "tgyro/tgyro_table.rst", "workshop.rst", "zreferences.rst"], "indexentries": {}, "objects": {}, "objnames": {}, "objtypes": {}, "terms": {"": [3, 4, 6, 7, 8, 9, 10, 11, 13, 16, 18, 19, 22, 24, 29, 30, 31, 34, 38, 42], "0": [0, 4, 5, 6, 7, 8, 10, 13, 15, 16, 18, 21, 22, 23, 24, 26, 28, 30, 31, 32, 38, 39, 40, 41], "00": [4, 8, 13, 42], "00035": 42, "00079": 42, "001": [5, 6, 22, 23], "0010": 42, "0029": 42, "005": 28, "00am": 41, "01": [4, 5, 6, 13], "012001": 42, "012008": 42, "012043": 42, "012502": 42, "014004": 42, "014505": 42, "015013": 42, "015015": 42, "016": 42, "02": [9, 39], "020": 42, "022305": 42, "022509": 42, "024004": 42, "03": [4, 13, 42], "032301": 42, "032310": 42, "036036": 42, "039": 42, "04": [39, 42], "042001": 42, "045001": 42, "045005": 42, "05": [13, 30, 39, 42], "052301": [28, 42], "055003": 42, "055013": 42, "055908": 42, "055909": 42, "056116": [28, 42], "06": [9, 16, 39, 42], "060704": 42, "060901": [28, 42], "062302": 42, "062518": 42, "066015": 42, "07": [9, 42], "072303": 42, "072304": 42, "072307": 42, "072505": 24, "0741": 42, "074501": 42, "074505": 42, "075018": 42, "08": [13, 28, 39, 42], "09": [8, 9, 13, 16, 28, 42], "095010": 42, "096005": 42, "0_": 38, "0a": 24, "0th": [5, 22], "1": [0, 4, 5, 6, 7, 8, 9, 10, 13, 16, 18, 21, 22, 23, 24, 26, 27, 30, 31, 32, 34, 37, 38, 39, 40, 42], "10": [3, 5, 6, 13, 18, 28, 39, 42], "100": [4, 5, 6, 28], "1000": 5, "1016": 42, "102301": 42, "102306": 42, "102508": 42, "1051": 42, "1063": 42, "1088": 42, "11": [9, 16, 22, 24, 41, 42], "110": 42, "1103": 42, "112007": 42, "1121": 42, "112303": 42, "112503": [28, 42], "113017": 42, "116007": 42, "11am": 41, "12": [30, 32, 42], "1209": 42, "122305": 42, "122306": 42, "122307": [28, 42], "122309": 42, "122503": 42, "122505": [28, 42], "122507": 42, "125": 42, "128": [13, 27, 42], "128913": 28, "13": [29, 42], "1361": 42, "14": [28, 42], "1477": 42, "1493": 24, "15": [5, 6, 28, 42], "1500": 28, "15th": 42, "16": [3, 5, 6, 11, 24, 27, 28, 30, 32, 42], "1695358": 42, "17": [22, 23, 24, 42], "1741": 42, "18": [28, 29, 42], "1800": 29, "186": 42, "1879": 42, "188": 42, "1897": 24, "19": [3, 18, 24, 29, 42], "1938": 42, "195004": 42, "1973": 24, "1976": 24, "1977": 24, "1982": 24, "1985": 42, "1988": [24, 42], "1990": 13, "1993": 42, "1994": [13, 42], "1995": 42, "1996": 42, "1997": [24, 42], "1998": 42, "1999": [13, 24, 42], "1_": 38, "1e": [5, 6, 14, 15], "1st": [5, 22], "1th": [5, 22], "2": [0, 4, 5, 6, 7, 8, 9, 10, 13, 16, 18, 21, 22, 23, 24, 26, 27, 30, 31, 32, 34, 37, 38, 39, 40, 42], "20": [24, 29, 30, 42], "2000": [11, 17, 42], "2001": [13, 42], "2002": 42, "2003": [11, 16, 17, 42], "2004": 42, "2005": [25, 42], "2006": 42, "2007": 42, "2008": [28, 42], "2009": [28, 42], "2010": [11, 17, 25, 42], "2011": [28, 42], "2012": [24, 28, 42], "2013": [9, 17, 42], "2014": [28, 42], "2016": [28, 42], "2017": 42, "2018": [9, 19, 42], "2019": [30, 42], "2020": 42, "2021": 42, "2022": [17, 20, 42], "21": [28, 29, 30, 32, 42], "2107": 42, "22": [29, 30, 42], "2229": 42, "23": [28, 42], "239": 24, "24": [3, 5, 6, 30, 41], "2408": 42, "2433": 42, "2436852": 42, "2482": 42, "25": [17, 24, 30, 32, 41, 42], "256": 27, "2560": 42, "26": 42, "27": [21, 22, 24, 28], "273": 42, "28": 42, "2834": 24, "2889008": 42, "2d": 22, "2m": 22, "2nd": [5, 6, 22, 32], "2t_e": 5, "2th": [5, 22], "3": [2, 3, 5, 6, 9, 10, 13, 16, 18, 21, 22, 23, 24, 30, 32, 34, 37, 38, 39, 42], "30": [24, 28, 42], "300": 13, "3082": 42, "310": 2, "32": [5, 22, 27], "3211": 42, "3230": 24, "324": 42, "32664": 42, "33": 42, "3335": 42, "3412": 42, "345": 3, "3452e": [21, 22], "356": 42, "384": 39, "3d": [22, 23], "3rd": [5, 6, 13, 22], "4": [0, 4, 5, 6, 9, 13, 14, 15, 16, 22, 23, 24, 27, 30, 32, 39, 42], "40": 42, "400": 16, "4018": 42, "4046": 42, "405": 24, "418": 24, "43": 42, "4326": 42, "44577e": 4, "448": 42, "45": 42, "45am": 41, "4655": 42, "47th": 42, "48": [24, 42], "49": 42, "4904301": 42, "4954905": 42, "4th": 22, "5": [5, 6, 9, 13, 16, 22, 23, 24, 28, 30, 32, 39, 42], "50": [28, 42], "500": 29, "51": 42, "512": 8, "53": 42, "54": 42, "545": 42, "5515": 42, "5579": 42, "56": 42, "58644e": 4, "59": [27, 42], "5th": [5, 28], "6": [4, 5, 13, 16, 22, 23, 24, 39, 42], "60": 16, "61": 42, "62": 42, "63": 42, "64": [0, 5], "65": [30, 32], "6587": 42, "667": 42, "6th": 13, "7": [4, 5, 16, 24, 30, 32], "71": 42, "724": 42, "724e": 5, "73": 42, "741": 42, "744": 42, "74754e": 4, "75": [13, 16, 28, 39], "77": 42, "78": 42, "8": [0, 4, 5, 6, 22, 24, 27, 42], "80": 42, "812": 42, "81550e": 4, "83": 29, "836": 24, "84003e": 4, "85": 42, "865350": 42, "88": 42, "9": [41, 42], "900": 16, "91": 42, "92020e": 4, "94": [13, 42], "95": 42, "96": 29, "97": [13, 42], "9991": 42, "9am": 41, "9i4": 42, "A": [3, 5, 8, 16, 17, 19, 21, 24, 28, 31, 38, 42], "AND": 19, "AS": [9, 19], "AT": 9, "As": [3, 13, 16, 26], "At": [13, 16], "BE": 19, "BES": 13, "BUT": 19, "By": [9, 13, 25, 26, 29, 39], "FOR": 19, "For": [4, 5, 10, 11, 13, 14, 16, 18, 21, 22, 24, 26, 30, 32, 39], "IN": 19, "If": [0, 5, 9, 19, 22, 26, 38, 39], "In": [0, 5, 10, 13, 16, 21, 22, 24, 26, 29, 33, 38, 39, 42], "It": [0, 3, 5, 7, 8, 11, 16, 22, 26, 38, 39], "NO": 19, "NOT": [4, 19], "No": [5, 23, 39], "OF": 19, "ON": 5, "OR": 19, "Of": 22, "On": [5, 8, 13, 38], "One": 13, "THE": 19, "TO": 19, "The": [3, 4, 5, 8, 9, 10, 16, 18, 19, 21, 22, 23, 24, 25, 28, 29, 30, 31, 32, 33, 34, 38, 39, 42], "Then": [4, 38], "There": [0, 5, 13, 16, 17, 18], "These": [4, 13, 18, 23, 24, 28], "To": [0, 4, 5, 8, 9, 12, 13, 18, 19, 27, 38, 39], "WITH": 19, "With": [13, 22, 29], "_": [5, 10, 21, 22, 24, 26, 30, 31, 32, 38], "_0": 26, "_1": [22, 26], "_ade": 22, "_deriv": 22, "_dlnndr": 22, "_dlntdr": 22, "_dphi0dr": 22, "_energi": 24, "_exb": 22, "_in": 21, "_model": 23, "_p": 39, "_para": 22, "_perp": 22, "_r": 22, "_radial": 24, "_relax": 39, "_rot": 22, "_rp": 22, "_scale": [17, 23], "_scenario": 37, "_size": 5, "_speci": 24, "_spitzer": 22, "_theta": 24, "_xi": 24, "_z": 22, "_zp": 22, "a_": [5, 7, 14, 24, 30, 32], "ab": [30, 32], "ab759c": 42, "abc63b": 42, "abc861": 42, "abil": [3, 13, 25, 33], "abl": 13, "about": [10, 13, 16, 17, 18, 22, 27], "abov": [5, 8, 9, 10, 19, 22, 26, 28, 38], "absenc": 5, "absent": 13, "absolut": [16, 30, 32], "absorb": [3, 11], "abstract": 17, "ac": 42, "ac243a": 42, "ac592b": 42, "ac7a4d": 42, "acb20": [10, 18, 42], "acceler": 5, "accept": 8, "access": 17, "accord": 26, "accordingli": 8, "account": 9, "accur": [13, 28, 29, 38], "accuraci": [5, 13, 16, 21, 29, 42], "achiev": [13, 16], "acknowledg": 17, "acm": 42, "acquisit": 13, "across": [4, 13, 24, 28, 42], "action": 19, "activ": [5, 13, 22], "actual": [13, 16], "ad": [3, 8, 11, 13, 16, 17, 18, 22, 24], "adapt": [4, 5, 41], "add": 27, "addit": [8, 13, 21, 22, 24, 26, 30, 33], "address": 16, "adequ": 13, "adiabat": [13, 22, 23, 24, 28, 30, 32], "adiabatic_elec": [17, 32], "adjust": [30, 32, 39], "adopt": [3, 38], "advanc": [13, 16, 42], "advantag": 13, "ae": 13, "affect": [13, 22, 39], "after": [0, 5, 13, 16, 38], "against": [13, 16, 28], "agenda": 17, "agre": [9, 16], "agreement": [13, 16, 17, 19, 29], "agt": [29, 42], "al": [24, 28], "alam": 42, "alcat": [16, 42], "alfv\u00e9n": 13, "algorithm": [3, 11, 13, 17, 33], "align": [4, 10, 24, 26, 30, 37, 38], "alik": 13, "all": [3, 4, 5, 8, 9, 11, 13, 16, 18, 19, 22, 24, 26, 28, 30, 31, 32, 39, 40], "allow": [5, 13, 16, 18, 22, 23, 26, 30, 32, 39], "almost": 0, "along": [5, 10, 22, 29, 30], "alpha": [4, 5, 10, 13, 16, 22, 24, 29, 30, 34, 39, 42], "alpha_": [17, 31, 32], "alpha_mach": [17, 32], "alpha_p": [17, 32], "alpha_quench": [17, 31, 32], "alpha_sa": [17, 32], "alpha_zf": [17, 31, 32], "alphabet": [3, 11, 17, 21, 29, 33], "also": [5, 8, 11, 13, 16, 17, 21, 22, 25, 28, 29, 33, 38], "altern": [26, 28], "although": [3, 13, 28, 33], "altix": 13, "alwai": [5, 13, 24, 26, 39], "am": 42, "ambigu": 13, "ambipolar": 24, "among": [13, 16], "amount": [13, 30, 39, 40], "amp": 6, "amp0": 6, "amp_phi_n": [15, 17], "amper": 13, "amplifi": 26, "amplitud": [5, 6, 13, 14, 15, 30, 31, 32], "an": [0, 3, 4, 5, 8, 13, 16, 18, 19, 21, 22, 25, 26, 29, 30, 38, 39, 42], "analog": 13, "analogi": 26, "analys": 26, "analysi": [13, 26, 28, 41, 42], "analyt": [21, 22, 23, 24], "analyz": 13, "angioni": [16, 42], "angl": [5, 6, 10, 22, 24, 26, 28], "angular": [13, 22, 23, 24, 26, 32, 34, 42], "ani": [5, 9, 19, 28, 30, 38, 39], "aniso": [23, 24], "aniso_model_": [17, 23], "aniso_model_1": 22, "aniso_model_2": 22, "aniso_model_3": 22, "anisotrop": [22, 23, 24], "anisotropi": 16, "anomal": 42, "anomali": 16, "anti": [10, 30], "antisymmetr": [5, 6, 22], "apart": 13, "app": [16, 42], "appar": 16, "appear": [13, 26], "append": 21, "appli": [5, 13, 26, 38], "applic": [13, 16, 28, 42], "approach": [3, 11], "appropri": 19, "approxim": [13, 21, 26, 30, 38, 39], "apt": 1, "ar": [3, 4, 5, 8, 9, 10, 11, 16, 17, 18, 19, 21, 22, 23, 24, 26, 28, 29, 30, 33, 38, 39], "arash": 41, "arbitrari": [4, 18, 21, 22, 23, 38], "arbon": 42, "architechtur": 42, "area": [9, 34, 42], "aris": [19, 26, 39], "around": 26, "arrai": [5, 22, 23, 24, 30, 32], "arrow": 26, "articl": [9, 19, 28], "artifici": [4, 13], "artun": 42, "as_1": [17, 32], "ascii": [24, 28], "asdex": [29, 42], "ash": [13, 39, 42], "ashourvan": 41, "ask": 17, "aspect": [3, 11, 22, 29], "assess": 39, "associ": [16, 19, 22, 24, 28, 38], "assum": [22, 24, 30], "assumpt": [30, 38], "asymmetr": [18, 24], "asymmetri": [21, 22, 24, 26, 28], "asymptot": [13, 21], "atom": [8, 12, 13, 27, 42], "attempt": [13, 16], "attend": 13, "attent": [8, 38], "attenu": 16, "attribut": 12, "austin": 42, "author": [9, 19], "auto": [8, 10], "autodetect": 4, "automat": 5, "aux": [34, 37], "auxiliari": [34, 39], "avail": [3, 5, 9, 13, 19, 22, 23, 28], "availbl": 28, "averag": [5, 13, 16, 22, 24, 26, 28, 34, 42], "avoid": 30, "axi": [31, 42], "axisymmetr": [22, 26, 42], "azevedo": 42, "b": [5, 6, 10, 13, 14, 16, 22, 24, 26, 30, 31, 32, 42], "b_": [4, 5, 7, 10, 14, 16, 22, 24, 30, 31, 32], "b_model_sa": [17, 32], "b_p": [5, 18, 22, 26], "b_t": [5, 22, 26], "balanc": [13, 17, 39, 40, 42], "ball": [8, 41], "balloon": [5, 29, 30, 32, 42], "banana": 26, "bar": [13, 16, 28], "barn": [28, 42], "barrier": [13, 25, 26, 29], "base": [5, 9, 13, 19, 22, 25, 28, 33, 39, 42], "baselin": 42, "bashrc": 27, "basi": [17, 22, 28, 30, 32, 38], "basic": 16, "bc08": [3, 9, 21, 26, 42], "bc09": [21, 26, 42], "bc12": [3, 9, 21, 42], "bc17": [3, 11, 42], "bc18": [3, 11, 42], "bcbh11": [28, 42], "beam": [16, 18, 26, 34, 42], "becam": 25, "becaus": [5, 26, 38, 39], "becom": [3, 11, 26], "been": [10, 13, 16, 21, 28, 29, 38], "beer": [13, 42], "befor": 13, "began": 13, "begin": [4, 23, 24, 26, 37, 38], "begun": 13, "behav": 16, "behaviour": 39, "being": [5, 13, 31, 32], "believ": [13, 26], "belli": 42, "below": [9, 10, 13, 16, 24, 26, 27, 28, 30, 34], "benchamark": 21, "benchmark": [13, 16, 17, 29], "beta": [5, 6, 13, 17, 22, 32, 39, 40, 42], "beta_": [4, 5, 10, 22], "beta_star": [10, 17, 23], "beta_star_scal": [6, 10], "betae_unit": [6, 10, 41], "betae_unit_scal": 6, "better": 29, "between": [4, 5, 13, 16, 24, 25, 28, 29, 38], "beyond": 21, "bf": 22, "bh96a": [13, 42], "bh96b": [13, 42], "bin": [0, 5, 7, 27], "binari": [0, 7], "binorm": [5, 6], "bisect": [30, 32], "bit": 5, "black": 16, "block": 38, "blue": [10, 16], "bogacki": 5, "bohm": [13, 16, 31, 32, 42], "bonanomi": 42, "bootstrap": [18, 24], "both": [5, 10, 13, 16, 25, 26, 29, 30, 32, 38, 41], "bottino": 42, "bounc": 42, "bound": [17, 22], "boundari": [3, 11, 13, 22, 30, 32, 38], "box": [5, 17, 41], "box_siz": 6, "bpar": 30, "bracket": 26, "bravenec": [13, 28, 42], "breadth": 5, "break": 13, "bremsstrahlung": 18, "brief": [11, 33], "bring": 16, "broad": 13, "broken": 42, "bt": 22, "btccw": [6, 10, 17, 23], "build": [13, 17, 30], "bull": 42, "bunit": 4, "burden": 8, "burrel": 42, "byer": 42, "c": [4, 7, 13, 18, 22, 24, 26, 28, 42], "c1": 39, "c2": 39, "c3": 39, "c4": 39, "c5": 39, "c6": 39, "c_": [3, 5, 7, 16, 24, 26, 28, 30, 32, 38, 39], "c_0": 10, "c_1": 10, "c_2": 10, "c_3": 10, "c_i": 26, "c_n": 10, "ca": 42, "cal": [26, 38], "calcul": [3, 13, 21, 24, 25, 28, 29, 34, 39, 40, 42], "calibr": [3, 11, 30], "call": [6, 13, 21, 25, 28, 30, 32, 33], "camenen": 28, "can": [0, 4, 5, 8, 10, 16, 17, 18, 21, 22, 26, 28, 30, 38, 39], "can05": [13, 42], "cancel": [13, 26], "candi": [12, 16, 28, 42], "cannot": [13, 26], "capabl": [13, 16, 38], "captur": [21, 30], "carbon": [5, 16], "carefulli": 13, "carri": [13, 16, 18, 26], "carrington": 42, "carter": 42, "casati": 16, "case": [5, 10, 11, 13, 17, 21, 22, 24, 26, 27, 28, 30, 38, 39], "cash": 5, "casson": 42, "cat": 18, "caus": [26, 30], "caution": 30, "cb10": [3, 10, 11, 42], "cb18": [3, 11, 42], "cbb16": [3, 4, 9, 11, 42], "cbs20": [3, 42], "cc": 13, "ccw": [30, 32], "cd": [0, 8], "cdot": [22, 26], "cece": 13, "cell": [13, 28, 42], "center": [5, 13, 22, 24], "central": [28, 29], "centrifug": [21, 26, 42], "centroid": [30, 32], "cer": 28, "certain": 13, "cg": 38, "cgyro": [0, 4, 8, 9, 10, 11, 17, 18, 20, 21, 26, 27, 30, 33, 34, 39, 42], "cgyro_plot": 8, "ch": 24, "chain": 34, "challeng": 25, "chang": [5, 9, 19, 22, 24, 29, 30, 39], "character": [3, 11, 13, 42], "characterist": 28, "charg": [5, 6, 18, 19, 22, 23, 24, 30, 32], "chassi": 13, "check": [13, 22, 41], "chen": 42, "chi": [10, 29], "chi_": 16, "chi_e": [16, 29], "chi_i": 16, "choic": [5, 22, 30, 39], "choos": [5, 7], "chowdhuri": [28, 42], "chri": 28, "chw": [9, 42], "circa": [11, 17, 25], "circl": [10, 16], "circul": 13, "circular": [10, 29], "circumst": 26, "citat": [9, 29, 42], "cj": 24, "claim": [13, 19], "clarifi": [13, 16, 26], "classic": [5, 11, 17], "clean": 0, "clear": [13, 25], "clebsch": 10, "clock": 27, "clockwis": [5, 10, 22], "clone": [0, 9], "close": [5, 8, 13, 16, 38], "closur": [30, 32], "cluster": 13, "cm": [34, 38], "cmat": 5, "co": [10, 13, 24], "coars": [13, 39], "code": [4, 11, 16, 19, 21, 22, 24, 25, 26, 27, 29, 33, 39, 41, 42], "coeffici": [7, 13, 22, 23, 24, 26, 30], "cohen": 42, "col": [24, 34], "collabor": 28, "collect": 17, "collis": [4, 5, 13, 21, 22, 23, 24, 28, 30, 32, 42], "collision": [3, 5, 11, 13, 21, 24, 28, 34, 39, 42], "collision_ene_diffus": 6, "collision_ene_restor": 6, "collision_field_model": 6, "collision_kperp": 6, "collision_model": [6, 17, 23], "collision_mom_restor": 6, "collision_precision_mod": 6, "collisionless": 5, "colloc": 22, "colorado": 16, "column": [18, 31], "com": [0, 9, 19, 41], "combin": [13, 24, 26], "command": [0, 2, 18], "comment": [5, 14, 17, 18, 22, 23, 28, 30, 31, 39], "commment": [5, 22], "commod": 13, "common": [27, 28, 30, 32], "commonli": 13, "commun": [3, 5, 6, 11, 13, 16, 42], "compar": [13, 16, 28, 29, 33, 39, 42], "comparison": [13, 28, 42], "compars": 16, "compens": 29, "compfluid": 42, "compil": [0, 2, 9, 13, 19], "complement": [3, 11, 21], "complementari": 16, "complet": [0, 3, 11, 16, 21, 26, 27, 28], "complex": 26, "complic": 3, "compon": [6, 24, 38], "comprehens": [13, 34, 42], "compression": [30, 32], "comput": [5, 10, 16, 17, 22, 30, 32, 39, 42], "concentr": 16, "concept": 17, "conceptu": 25, "conclus": 13, "condit": [3, 9, 11, 13, 16, 19, 22, 38], "conduct": [16, 18], "conf": 42, "confer": [13, 42], "configur": [8, 10], "confin": [28, 29, 42], "confirm": 13, "confront": 13, "connect": [13, 17, 18, 19, 33, 38, 39], "connor": [5, 22], "consequ": 42, "conserv": [5, 6, 13], "consid": 13, "consider": 17, "consist": [5, 6, 13, 17, 24, 39, 42], "constant": [5, 22, 26], "construct": 10, "consult": 10, "contact": 16, "contain": [7, 13, 16, 18, 21, 24, 26], "context": 13, "continu": [13, 39], "continuum": 28, "contour": 10, "contract": 19, "contrast": [16, 29, 42], "contribut": [13, 30, 32], "control": [4, 5, 13, 16, 39, 42], "convect": [16, 18, 24], "conveni": [18, 38], "convent": 10, "converg": [5, 13, 28, 38, 42], "coordin": [3, 5, 7, 17, 22], "copi": [0, 5, 9, 19], "copyright": [9, 19], "core": [3, 8, 11, 13, 27, 28, 29, 42], "cori": 41, "corioli": [13, 26], "correct": 13, "correl": [13, 16], "correspond": [5, 10, 16, 21, 22, 39], "corrug": [13, 42], "cosin": [22, 24], "cost": 5, "could": [8, 13], "count": 8, "counter": [5, 10, 22], "counterclockwis": 10, "coupl": [13, 21, 22, 30, 38, 42], "courant": 13, "courtesi": 12, "cover": [3, 11, 16, 30], "cowlei": 42, "cpc": [13, 42], "cpu": [5, 17], "crai": [13, 42], "creat": [0, 13, 25], "crictic": 13, "critic": 26, "cross": [17, 21, 31, 32, 42], "crucial": [13, 16], "csb": [3, 42], "cum": 42, "curiou": 38, "current": [5, 6, 13, 18, 22, 23, 24, 28, 42], "curv": [13, 16], "curvatur": [26, 30, 32, 42], "custom": 41, "cut": [3, 11], "cutoff": [30, 32], "cw03a": [3, 11, 13, 42], "cw03b": [3, 9, 11, 13, 16, 42], "cw06": [13, 42], "cwc": [28, 42], "cwd04": [3, 11, 13, 16, 42], "cwfh07a": [13, 42], "cwfh07b": [13, 42], "cwpc06": [13, 42], "cwr04": [13, 42], "cyclon": 13, "cyclotron": 16, "cylindr": 10, "d": [3, 5, 10, 13, 17, 18, 20, 21, 22, 24, 26, 29, 30, 32, 34, 42], "dai": 41, "damag": 19, "damp": 13, "dannert": 42, "dash": 16, "data": [5, 6, 10, 13, 17, 18, 22, 24, 25, 28, 39], "databas": [3, 11, 13, 29], "dataset": 18, "date": [0, 13, 25, 28, 41], "dcd": [29, 30, 42], "deal": [19, 38], "deby": [6, 17, 32], "debye_factor": [17, 32], "decad": [3, 13], "decid": 25, "decoupl": [13, 39, 40], "decreas": [4, 5, 16], "decyk": 42, "dedic": 27, "deduc": 26, "default": [4, 5, 6, 14, 15, 22, 23, 30, 32, 39, 40], "defin": [5, 10, 21, 22, 24, 26, 30, 32, 33, 38], "defind": 30, "definit": [4, 5, 10, 14, 18, 22, 23, 26, 30, 32, 34, 39], "deform": 10, "delai": 13, "delta": [4, 6, 7, 10, 13, 14, 16, 17, 18, 23, 28, 30, 31, 32, 38, 39, 42], "delta_": [22, 38], "delta_loc": [17, 32], "delta_t": [4, 6], "delta_t_method": [4, 6], "demand": 5, "demonstr": [13, 16, 29], "den": [5, 22], "denot": [13, 26, 38], "dens_": [6, 17, 23], "dens_1": [5, 22], "dens_2": 22, "dens_3": 22, "densiti": [3, 5, 6, 13, 16, 17, 18, 21, 22, 23, 24, 26, 28, 29, 30, 31, 32, 33, 38, 39, 40, 42], "density_spectrum": [17, 32], "depart": 9, "departur": 13, "depend": [5, 13, 22, 26, 31, 32, 38, 42], "deprec": 32, "depress": 13, "depric": 30, "depth": 5, "deriv": [5, 22, 26, 38], "describ": [13, 17, 26, 38], "descript": [3, 6, 7, 13, 15, 17, 18, 21, 23, 26, 31, 32, 33, 40], "design": [3, 16, 17, 28, 33], "desir": [5, 38], "desktop": 17, "detail": [0, 13, 16, 17, 22, 26, 28, 34, 38, 39], "determin": [5, 22, 23, 38], "dettrick": 42, "deuterium": [3, 5, 21, 22, 24], "dev": 1, "develop": [2, 3, 9, 11, 13, 17, 21, 29, 39], "deviat": [13, 21, 28], "devic": 29, "dh93": [13, 42], "dh95": [16, 42], "diagnos": 13, "diagnost": [8, 13, 22, 28, 41, 42], "diagon": [5, 16, 38], "diamagnet": [16, 22, 24, 26], "dickinson": 42, "did": 13, "differ": [22, 24, 28, 30, 31, 32, 34, 38, 39], "differenti": 13, "difficulti": [13, 16], "diffus": [5, 6, 13, 16], "diii": [5, 10, 13, 17, 20, 22, 29, 42], "dimens": [7, 22], "dimension": [13, 24], "dimensionless": [5, 18, 24, 25, 38, 39], "dimit": [13, 42], "dir": 39, "direct": [5, 13, 16, 22, 28, 30, 32, 42], "directli": [7, 22, 38], "directori": 0, "dirichlet": 13, "disabl": 5, "discharg": [13, 16, 28, 29, 42], "disclaim": [9, 19], "discontinu": [13, 42], "discover": 13, "discoveri": 13, "discret": [5, 13, 17, 28, 42], "discuss": [5, 16, 26], "dishcharg": 28, "dispar": 42, "displaystyl": [4, 5, 18, 24, 26, 38, 39], "dissimilar": 13, "dissip": [5, 13, 42], "distanc": 5, "distinct": [13, 38], "distinguish": 30, "distribut": [5, 6, 9, 13, 16, 17, 24], "divid": [5, 10], "divisor": 5, "djkr00": [13, 42], "dke": [22, 23, 24], "dlnndr": [5, 22], "dlnndr_": [6, 17, 23], "dlnndr_1": 22, "dlnndr_2": 22, "dlnndr_3": 22, "dlnndre": 22, "dlnndre_ad": [17, 23], "dlntdr": [5, 22], "dlntdr_": [6, 17, 23], "dlntdr_1": 22, "dlntdr_2": 22, "dlntdr_3": 22, "dlntdr_para_": [17, 23], "dlntdr_para_1": 22, "dlntdr_para_2": 22, "dlntdr_para_3": 22, "dlntdr_perp_": [17, 23], "dlntdr_perp_1": 22, "dlntdr_perp_2": 22, "dlntdr_perp_3": 22, "dlntdre": 22, "dlntdre_ad": [17, 23], "dn": 34, "dn_": [30, 32], "do": [13, 19, 39], "document": [13, 19, 28], "doe": [4, 9, 13, 16, 22, 30, 39], "doi": 42, "domain": [6, 7, 13, 22], "domin": [3, 11, 13, 30], "done": [16, 22, 28], "dong": [16, 42], "dopper": 6, "doppler": [6, 30, 32], "dorland": [13, 42], "dot": 16, "doteq": [4, 5, 22, 26, 38], "down": [6, 10, 16, 18, 21, 24, 28], "download": [2, 17, 28], "dp": 5, "dphi0dr": [17, 23], "dr": [5, 10, 22, 24, 26, 30, 32, 34], "draft": [9, 19], "drain": 13, "drastic": 5, "draw": 13, "drift": [13, 21, 22, 23, 26, 28, 30, 32, 42], "driftwav": [30, 32], "drive": 13, "driven": [18, 26, 42], "drmajdx_loc": [17, 32], "drmindx_loc": [17, 32], "dt": 39, "dt_": [30, 32], "du": 42, "dud": 42, "dud22": [29, 30, 42], "due": [5, 13, 16, 22, 26, 28, 29, 30, 42], "dunigan": 42, "dure": [5, 13], "dux": 42, "dv": 34, "dwbc96": [13, 42], "dx": 38, "dynam": [13, 21, 37, 39, 42], "dynamo": 13, "dz": 39, "dzmag": [6, 10], "dzmajdx_loc": [17, 32], "e": [4, 5, 6, 7, 8, 13, 14, 16, 18, 21, 22, 23, 24, 26, 28, 30, 32, 38, 42], "e0": 31, "e19": 24, "e_": [22, 24], "e_a": [5, 7], "e_max": 6, "e_r": [18, 22, 23, 26], "each": [0, 22, 24, 30, 31, 32, 39], "earli": [13, 42], "earliest": 13, "easiest": 8, "edg": [3, 11, 28], "edit": 0, "edlund": 42, "ee": 5, "eff": [5, 16, 18], "effect": [4, 5, 16, 17, 18, 22, 24, 26, 28, 29, 30, 32, 39, 42], "effici": [13, 39], "effort": [3, 13], "efit": [25, 28], "egrid": 7, "ei": [5, 30, 32, 37], "eigenmod": [29, 30, 32], "eigenvalu": [5, 30, 31, 32, 42], "eigenvalue_spectrum": [17, 32], "eikon": [30, 32], "either": [13, 27], "electon": 13, "electr": [5, 22, 23, 24, 26, 39, 40, 42], "electrion": 28, "electromagnet": [3, 6, 11, 13, 28, 29, 39, 42], "electron": [3, 5, 6, 11, 13, 18, 22, 23, 24, 26, 28, 29, 30, 32, 38, 39, 40, 42], "electrostat": [13, 24, 26, 28, 30], "element": [5, 22, 34], "elev": [5, 6, 10, 18, 22, 23, 30, 32], "elimin": 39, "elit": [30, 32], "ell": 10, "elong": [5, 6, 10, 18, 22, 23, 29, 30, 32], "elsewher": 8, "em": 28, "email": [9, 19, 41], "emcw05": [11, 13, 16, 42], "emcw06a": [13, 16, 42], "emcw06b": [13, 42], "emf": 13, "emiss": 16, "emphas": [13, 26, 38], "emploi": 38, "enabl": [5, 6], "encount": 16, "encourag": [7, 28], "end": [4, 13, 24, 26, 37, 38], "energet": [13, 39], "energi": [5, 6, 7, 9, 13, 16, 17, 18, 22, 24, 29, 31, 32, 33, 38, 39, 42], "energy_grid": 28, "enforc": [4, 5, 6, 13, 30, 38, 39], "enhanc": [26, 42], "enorm": 13, "enough": 30, "ensembl": 33, "ensur": [9, 19, 28], "enter": [0, 22], "entir": [0, 18], "entri": 24, "entropi": [13, 42], "env": [0, 27], "environ": [13, 17, 41], "envis": 38, "epar0": [17, 23], "epar0_spitz": [17, 23], "eq": 38, "equal": [13, 22, 23, 26, 30, 32, 39], "equat": [3, 4, 7, 11, 13, 17, 21, 22, 24, 26, 29, 38, 39, 42], "equilibria": [17, 18], "equilibrium": [5, 7, 10, 13, 16, 18, 22, 24, 25, 26, 28, 29], "equilibrium_model": [6, 10, 17, 23], "equival": [5, 10, 13], "era": 11, "erg": [34, 38], "error": [4, 5, 6, 7, 13, 16, 28, 38, 39], "error_tol": [4, 6], "esl": 21, "esoter": 13, "especi": 29, "essenti": 16, "establish": [8, 13, 25], "estim": 5, "estrada": [16, 42], "et": [24, 28], "eta": 39, "eta_": 38, "etc": [13, 39, 41], "etg": [13, 16, 29, 30, 32], "etg_factor": [17, 32], "ethes": 42, "ethier": 42, "eulearian": 28, "eulerian": [3, 21, 42], "eurofus": 42, "european": 16, "evalu": [38, 42], "even": [5, 13, 38], "event": 19, "eventu": 13, "everi": [5, 18, 39], "evid": 16, "evolut": [5, 9, 28, 38, 39, 40, 42], "evolv": [5, 6, 13, 38, 39, 40], "exact": [38, 39], "exactli": [0, 22], "exam": 28, "examin": [13, 28], "exampl": [0, 10, 13, 26, 39], "exb": [23, 29, 30, 32], "exch": 39, "exchang": [18, 31, 32, 34, 37, 39, 42], "exclud": [30, 32], "exec": 0, "execut": 8, "exercis": 16, "exist": 0, "exp": 38, "expans": 22, "expect": [10, 13], "expens": 38, "experi": [13, 16, 26, 39, 42], "experiment": [5, 10, 13, 16, 17, 18, 21, 22, 23, 25], "explanatori": [30, 32], "explicit": [4, 5, 13, 38], "explor": 13, "expon": [30, 32], "export": [0, 27], "express": [19, 26], "extens": 21, "extra": [17, 28], "extrem": 16, "extrema": 10, "f": [13, 28, 34, 39, 42], "f_": [24, 26], "f_c": 16, "f_i": 26, "f_p": 39, "fabl": 42, "fact": 13, "factor": [5, 6, 10, 13, 16, 18, 22, 23, 24, 30, 31, 32, 42], "fahei": [13, 42], "failur": 13, "faith": 34, "fals": [13, 30, 32], "faq": 3, "fast": [18, 39, 42], "faster": 5, "fastest": 5, "fc04": [13, 42], "featur": [13, 23, 38], "februari": [16, 41], "feedback": 13, "few": [8, 13, 39], "fftw": [1, 2], "field": [4, 5, 8, 16, 17, 22, 23, 24, 26, 30, 31, 32, 39, 40, 42], "field_print_flag": [6, 7], "field_spectrum": [17, 32], "fig": 16, "figur": [10, 12, 16, 28], "file": [5, 8, 10, 17, 19, 21, 22, 28, 29, 33, 39, 41], "filenam": [7, 24, 32], "filesystem": 13, "fill": 23, "filter": [17, 32], "final": [25, 26, 39], "find": [0, 8, 16, 29, 30, 32, 39], "find_width": [17, 32], "fine": 13, "finit": [5, 13, 14, 22, 28, 29, 38, 39], "fior": 42, "first": [3, 5, 8, 11, 13, 17, 18, 21, 22, 24, 28, 29, 39, 42], "fit": [19, 29], "fix": [4, 5, 13, 24, 38, 39, 41], "flag": [5, 8, 22, 39], "flexibl": 38, "flow": [5, 6, 13, 16, 22, 24, 26, 30, 42], "flr": 6, "fluct": 41, "fluctuat": [5, 13, 16, 26, 28, 29, 30, 31, 32, 39, 42], "fluid": [24, 29, 42], "flutter": 30, "flux": [5, 6, 7, 13, 16, 17, 18, 21, 22, 24, 26, 28, 29, 30, 31, 32, 38, 39, 41, 42], "focus": [3, 13, 29], "fokker": [21, 22, 26, 42], "folder": 0, "follow": [0, 5, 9, 13, 16, 19, 21, 24, 26, 27, 38], "forc": 17, "forgotten": 11, "form": [10, 13, 21, 22, 26, 34, 38], "formal": [13, 17], "format": [5, 13, 17, 24, 25, 26, 28, 42], "formul": [3, 11, 17, 26], "formula": [26, 39, 40], "fortran": [0, 1, 2], "forward": 38, "found": [0, 9, 13, 16, 28, 29, 38], "foundat": [13, 34], "fourier": [5, 22, 23, 24, 30, 32], "fp": 22, "frac": [4, 5, 7, 10, 13, 18, 22, 24, 26, 30, 31, 32, 34, 38, 39], "fraction": [13, 26, 30, 32], "francisco": 42, "frankli": 38, "free": [9, 13, 19, 26], "freq": [7, 31], "freq_tol": 6, "frequenc": [5, 6, 7, 16, 18, 22, 23, 24, 26, 30, 32], "frequent": 17, "fridai": 41, "friend": 41, "from": [0, 3, 5, 10, 11, 16, 17, 19, 21, 22, 24, 25, 26, 28, 29, 30, 32, 39], "ft_model_sa": [17, 32], "fu": [16, 37, 42], "full": [0, 5, 16, 21, 22, 26, 42], "fulli": 13, "function": [5, 13, 16, 22, 24, 26, 30, 32, 38], "fund": 9, "fundament": 4, "furnish": 19, "furth": 42, "further": 10, "fusion": [3, 9, 11, 13, 18, 19, 27, 41, 42], "futur": [3, 13, 28, 42], "g": [3, 8, 10, 18, 21, 22, 24, 42], "g_": 24, "ga": [13, 17], "gacod": [0, 3, 4, 5, 9, 10, 21, 25, 26, 27, 28, 33, 34, 39, 40, 41], "gacode_platform": [0, 27], "gacode_qsub": [8, 27], "gacode_root": [0, 27], "gacode_setup": [0, 27], "gafus": 0, "galleri": [11, 17], "gam": 13, "gamma": [22, 30, 31], "gamma_": [6, 7, 24, 26, 32, 39, 41], "gamma_1": 32, "gamma_2": 32, "gamma_a": [7, 34], "gamma_e_scal": 6, "gamma_p": [6, 26, 41], "gamma_p_scal": 6, "gamot": 42, "gap": 13, "gat": [9, 19, 41], "gauss": [30, 32], "gaussian": 30, "gb": [7, 24, 32, 38], "gcc": 2, "gcc13": 2, "gchat": [17, 32], "ge": 28, "gem": [16, 28], "gene": [16, 28], "gener": [5, 8, 10, 12, 13, 18, 21, 22, 26, 28, 29, 30, 34, 38, 39, 41, 42], "geo": [7, 22, 28, 41], "geo_ni": [17, 23], "geo_yin": [17, 23], "geometr": [22, 30], "geometri": [3, 16, 22, 24, 25, 28, 29, 30, 31, 42], "geometry_flag": [17, 32], "georg": 42, "geqdsk": 28, "get": [9, 21, 30], "gfile": 25, "gflux_print_flag": 6, "gfortran": [0, 1], "ghat": [17, 32], "git": 0, "github": [0, 3, 9, 17], "give": [4, 10, 13, 26, 27, 31, 33], "given": [4, 5, 13, 22, 26, 38, 39], "gk": [3, 6, 7, 11, 13, 29, 30], "gkw": 17, "glf23": [13, 29], "global": [3, 5, 11, 22, 27, 28, 39, 42], "goal": [13, 38], "good": [13, 16, 39], "gpu": [5, 6, 17], "gpu_bigmem_flag": 6, "grad": [10, 22], "grad_r0": 30, "gradb": [30, 32], "gradb_factor": [17, 32], "gradient": [3, 5, 6, 11, 13, 22, 23, 24, 26, 29, 30, 32, 38, 39, 40, 42], "graduat": 13, "grain": 13, "grant": 19, "greater": 4, "greatli": [3, 11], "green": 16, "greenwald": 42, "grid": [5, 7, 13, 17, 18, 22, 30, 39], "gridpoint": [5, 6, 13, 18, 22, 23, 24, 38], "grierson": 42, "groebner": 42, "group": [13, 16, 17, 19, 28, 42], "grow": 13, "grown": 13, "growth": [13, 16, 28, 30, 32], "growthrat": [30, 32], "gs2": [13, 16, 28], "gss": [29, 42], "gstotal": 13, "gtc": 16, "guid": [5, 10, 42], "gv": 24, "gwt": [28, 42], "gyro": [3, 5, 9, 10, 13, 17, 21, 25, 26, 29, 30, 31, 32, 33, 39, 42], "gyroaverag": [3, 13], "gyrobohm": [7, 30, 32, 38, 39, 42], "gyrofluid": [13, 28, 42], "gyrokinet": [4, 9, 11, 17, 21, 25, 26, 28, 29, 42], "gyroradii": 13, "gyroradiu": [4, 7, 13, 30, 32], "gyrovisc": 24, "gyroviscos": 24, "g\u00f6rler": [28, 42], "h": [13, 24, 28, 29, 42], "h_print_flag": 6, "ha": [3, 11, 13, 16, 21, 27, 28, 29, 30, 31, 32, 38, 39], "had": 13, "hahm": 42, "half": [7, 13], "hallatschek": 42, "hammett": [13, 42], "hamper": 13, "hand": [5, 10, 13, 22], "handl": 25, "hardwar": [5, 13], "harmon": [5, 10], "harri": 42, "hat": [18, 22, 24, 38], "have": [3, 10, 11, 16, 26, 28, 29, 38, 39], "hazeltin": 24, "hazltin": 24, "hbc": [13, 42], "hcw": [13, 42], "he": 42, "he4": 39, "heat": [13, 16, 24, 34, 39, 42], "heavi": 26, "hein": 42, "helium": [13, 39, 42], "help": [0, 16], "henc": 26, "here": [4, 5, 10, 13, 18, 21, 26, 28, 38], "herebi": 19, "hermit": [30, 32], "heurist": 42, "hh": 24, "hhw": [3, 11, 42], "hidden": 30, "hierarchi": 41, "high": [4, 5, 21, 29, 30, 32, 39, 42], "higher": [13, 22, 23, 26, 39], "highli": [3, 13, 42], "hinton": [13, 17, 22, 24, 26, 42], "hirshman": [22, 24, 39], "histor": [10, 13], "histori": [11, 17], "hoc": [3, 11, 22], "hol16": [28, 42], "hold": [13, 26, 39], "holder": 19, "holland": [13, 16, 28, 42], "home": 0, "homogen": 42, "horton": [24, 42], "host": 7, "hostnam": 7, "houlberg": 24, "how": [4, 5, 18, 22, 39], "howard": 42, "howev": [9, 10, 13, 16, 19], "hpc": [13, 17, 41], "hr": 24, "http": [0, 2, 42], "hu": 42, "huck": 42, "human": 7, "hw06": [13, 42], "hw85": [26, 42], "hwc04": [13, 42], "hwm": [28, 42], "hybrid": 42, "hybridtest": 0, "hypothesi": 13, "i": [0, 3, 4, 5, 7, 8, 9, 10, 11, 13, 14, 16, 18, 19, 21, 22, 23, 24, 26, 27, 28, 29, 30, 31, 32, 33, 34, 38, 39, 41, 42], "i0": 26, "i1": 26, "i_": [30, 32], "iaea": 42, "ibm": 13, "ibranch": [17, 32], "idea": 25, "ident": 13, "identifi": 13, "identit": 28, "idiosyncrat": 11, "ie": 24, "ieee": 42, "iflux": [17, 32], "ignor": [13, 18, 22, 26, 30, 32, 38], "igor": 41, "iii": 42, "imag": [11, 16, 17, 42], "imex": 13, "immedi": 30, "impact": 42, "implement": [13, 16, 26, 28, 42], "impli": 19, "implic": [41, 42], "implicit": [4, 13, 38], "import": [0, 3, 13, 26, 29, 30, 38], "impos": [13, 16], "improv": [13, 25, 29, 30], "impur": [13, 26, 39, 42], "inc": 0, "includ": [5, 9, 11, 12, 13, 16, 18, 19, 21, 22, 23, 24, 28, 30, 32, 38, 42], "inclus": [5, 26, 28], "incorpor": 16, "incorrect": 16, "increas": [5, 10, 13, 16, 26, 29, 39], "increasingli": [3, 11], "inde": 13, "independ": [5, 13, 22, 26, 33, 38, 39], "index": [7, 22, 31], "indic": 13, "individu": 28, "induc": [5, 13, 22, 26], "induct": [22, 23], "infer": [5, 10, 13, 22], "infinit": 29, "influenc": [26, 38], "info": [4, 5, 7], "inform": [3, 7, 10, 11, 18, 24, 27], "initi": [5, 6, 9, 13, 14, 15, 16, 25, 28, 39, 40, 42], "inject": 26, "inner": 5, "input": [4, 7, 8, 10, 11, 17, 24, 25, 28, 29, 31, 41], "insid": 5, "insofar": 21, "instabl": [13, 30, 32, 42], "instal": [0, 1, 2, 17], "instanc": [26, 33, 39], "instead": [22, 33, 38], "instruct": 27, "instrument": 16, "int": 34, "int_": 22, "int_0": [34, 38], "int_r": 38, "integ": [5, 22, 23], "integr": [3, 4, 5, 6, 13, 22, 33, 38, 39], "intens": [5, 16, 29, 31, 32, 42], "intensity_spectrum": [17, 32], "interact": 8, "intercod": 16, "interconnect": 13, "interest": [11, 28, 38], "interestingli": 13, "interfac": [3, 7, 17, 21, 22, 32], "intern": [5, 6, 22, 42], "interpol": 24, "interpret": 24, "interprocess": 42, "interv": 6, "intev": 16, "introduc": 38, "invari": 4, "invent": 13, "investig": [13, 28], "invit": 42, "inward": [30, 32], "ion": [5, 6, 7, 13, 16, 18, 22, 24, 26, 28, 29, 30, 32, 38, 39, 40, 42], "ip": [5, 22], "ipccw": [6, 10, 17, 23], "ipm": 13, "irreduc": [30, 32], "isotop": 42, "isotrop": 22, "isotropi": 13, "issu": [0, 9, 13, 19, 28], "itb": 13, "iter": [38, 39, 42], "iterdb": 28, "iterdb2gyro": 25, "iterdb_read": 25, "itg": [13, 16, 29, 30], "itpa": 28, "its": [3, 5, 13, 16, 22, 29, 33], "ix": 24, "j": [12, 16, 24, 28, 38, 42], "j_": 24, "j_r": 34, "jacobian": [17, 34, 39, 40], "jan": 17, "jb": [18, 21], "jbstor": 18, "jcp": 42, "jenko": 42, "jet": [13, 29], "jift": 41, "jj": 38, "jnb": 18, "job": [8, 25, 27, 33, 39], "journal": 13, "jr": 42, "jrf": 18, "jt60": 13, "juli": 16, "june": [16, 42], "justifi": 26, "k": [22, 24, 29, 30, 32, 42], "k_": [5, 16, 24, 30, 32], "k_a": 26, "k_per": [30, 32], "k_r": 16, "k_x": [5, 6, 7, 31, 32], "k_y": [4, 5, 6, 7, 31, 32], "kaiser": 42, "kappa": [6, 10, 17, 18, 23, 30, 32], "kappa_loc": [17, 32], "karp": 5, "kay": 42, "kb": 29, "keep": 0, "kei": [3, 4, 13, 16, 17, 38], "kept": 5, "kerbel": 42, "kernel": [3, 7], "kev": [4, 18, 24], "kg": [21, 22, 24], "kh94": [13, 42], "kiefer": 42, "kim": 42, "kind": 19, "kinet": [3, 5, 11, 13, 21, 22, 23, 24, 28, 29, 39, 42], "kinsei": 42, "kishimoto": 42, "kkh": [13, 42], "knolker": 42, "know": 10, "known": [13, 26], "knoxvil": 42, "koh": 24, "kojak": 13, "kone": 42, "kot88": [13, 42], "kotschenreuth": [13, 42], "kramer": 42, "kro99": [13, 42], "kromm": [13, 42], "krt95": [13, 42], "ksw08": [29, 42], "kutta": 13, "kwc05": [3, 11, 13, 42], "kwc06": [3, 11, 13, 42], "kwc07": [3, 11, 13, 42], "kx": [31, 32], "kx0": [30, 32], "kx0_loc": [17, 32], "kx_e": [31, 32], "kx_phi": 41, "kxky_apar": [5, 7], "kxky_bpar": [5, 7], "kxky_e": 7, "kxky_n": 7, "kxky_phi": [5, 7], "kxky_v": 7, "ky": [4, 6, 17, 32], "ky_cflux": 7, "ky_flux": [7, 41], "ky_phi": 41, "kygrid_model": [17, 32], "kymin": 30, "l": [5, 13, 16, 17, 20, 22, 29, 42], "l11": 22, "l12": 22, "l21": 22, "l22": 22, "l25": 42, "l_": 24, "l_0": 5, "l_m": 22, "l_t": 16, "l_x": [5, 39], "label": 18, "lack": 29, "laguerr": [5, 22, 24], "lambda": [5, 22], "lambda_": 24, "lambda_deby": 6, "lambda_debye_scal": 6, "landau": [13, 29, 42], "landmark": 13, "langl": [26, 34], "languag": 13, "laptop": 17, "larg": [3, 4, 5, 8, 11, 13, 16, 22, 26, 30, 32, 39, 42], "larger": [3, 5, 11, 13, 16, 29], "larmor": [13, 16, 22, 23, 24, 29], "last": [0, 26, 30, 32, 39], "later": [13, 16], "latter": [13, 16], "law": 42, "layer": [3, 11, 13], "layout": [13, 27], "lcf": 5, "ldot": [5, 13, 24, 26], "le": [5, 16, 22], "le3": 22, "lead": 26, "leav": [5, 26], "leboeuf": 42, "lebrun": 42, "led": 25, "lee": 42, "left": [4, 5, 10, 22, 23, 24, 26, 34, 37, 38, 39], "legaci": [4, 11], "legend": 17, "legendr": [5, 22, 24], "leht02": [13, 42], "length": [3, 5, 6, 13, 21, 22, 24, 30, 32, 39, 40], "less": [5, 13, 39], "lett": [16, 42], "letter": [9, 19], "level": [0, 16, 28, 39], "li": 42, "liabil": 19, "liabl": 19, "libfftw3": 1, "libmpich": 1, "librari": 1, "licens": 17, "like": [3, 8, 10, 11, 13, 16, 18], "limit": [19, 21, 22, 24, 26, 30, 31, 32, 42], "lin": [16, 42], "line": [0, 2, 13, 16, 18, 23, 27, 41], "linear": [5, 8, 13, 14, 16, 21, 22, 28, 29, 30, 41, 42], "link": [0, 17, 28, 41], "linsker": [30, 32], "linsker_factor": [17, 32], "linux": 0, "list": [3, 8, 9, 11, 17, 19, 21, 28, 29, 33], "littl": [13, 29, 38], "ll": [21, 26], "llnl": 16, "ln": [5, 16, 22, 24, 26], "loc": [37, 39], "loc_betae_scal": [17, 40], "loc_dx": [17, 40], "loc_dx_max": [17, 40], "loc_er_feedback_flag": [17, 40], "loc_evolve_grad_only_flag": [17, 40], "loc_he_feedback_flag": 17, "loc_iteration_method": 39, "loc_lock_profile_flag": [17, 40], "loc_rad": [4, 41], "loc_relax": [17, 40], "loc_residual_method": [17, 40], "loc_restart_flag": [17, 40], "loc_scenario": [17, 40], "loc_te_feedback_flag": [17, 40], "loc_ti_feedback_flag": [17, 40], "local": [5, 10, 17, 21, 22, 23, 24, 28, 38, 39, 42], "locat": [13, 16], "locpargen": 4, "log": 5, "logarithm": [23, 30], "logic": 27, "long": [5, 13, 26], "longrightarrow": 26, "look": [10, 18], "loop": 5, "lorentz": [5, 26], "loss": [5, 13, 26, 42], "lost": 13, "low": [3, 5, 11, 13, 16, 25, 29, 30, 32], "lower": [5, 13, 22], "lowest": [5, 22, 30], "lpe": [13, 42], "luda": 42, "lvert": [16, 30, 32], "m": [5, 18, 24, 26, 28, 42], "m2": 0, "m_": [3, 5, 21, 22, 24, 30, 32], "m_a": 34, "m_d": [4, 5, 7, 22, 24], "m_e": 5, "m_i": 26, "m_theta": 24, "ma": 18, "mac": 0, "mach": [6, 26, 30, 32], "mach_scal": 6, "machin": 0, "macport": 2, "made": [9, 13, 19, 21, 30, 32], "magnet": [4, 5, 6, 13, 16, 17, 22, 23, 24, 28, 30, 32, 42], "magnitud": [16, 22], "mahinthakumar": 42, "mai": [16, 26, 28, 42], "main": [5, 25, 26, 32, 39], "maintain": [13, 17, 27], "maj": [30, 32], "major": [5, 6, 10, 13, 18, 22, 23, 24, 30, 32], "make": [0, 5, 9, 13, 19, 38, 39], "makefil": 0, "malonei": 42, "manag": [8, 13, 33, 39, 40], "mani": [11, 13], "manner": 13, "manual": 13, "mar": 28, "margin": [13, 16], "marinoni": 42, "mark": 13, "mass": [3, 5, 6, 13, 21, 22, 23, 24, 26, 30, 32], "mass_": [6, 17, 23], "mass_1": [5, 17, 22, 32], "mass_2": [5, 22], "mass_3": [5, 22], "match": [4, 13, 28, 39, 42], "math": 22, "mathbf": [5, 10, 13, 14, 16, 22, 26, 30], "mathrm": [3, 5, 10, 13, 16, 24, 34, 37, 39], "mathtt": [4, 24, 37], "matric": 38, "matrix": [26, 38], "max": [5, 23, 39], "max_": 10, "max_tim": 6, "maxim": [5, 30, 32], "maximum": [5, 6, 13, 22, 30, 32, 39, 40], "maxwel": 42, "maxwellian": [5, 16, 21, 22, 24, 30], "mbox": 38, "mcclenaghan": 42, "mckee": 42, "md": [30, 32], "me": [30, 32], "mean": [10, 13, 22, 26, 42], "meaning": 24, "measur": [5, 13, 16, 22, 26, 28, 30, 32, 38, 42], "mechan": 30, "meet": 13, "memori": [5, 6, 7, 13], "merchant": 19, "mesh": [5, 7, 33], "meshpoint": 5, "method": [4, 13, 16, 17, 29, 30, 32, 38, 39, 42], "metric": [28, 42], "mhd": [13, 30], "microst": [28, 42], "microturbul": 42, "mid": 13, "midplan": [4, 5, 22, 24, 30, 32], "mikkelsen": 42, "mila": [16, 42], "miller": [5, 22, 28, 29, 30], "milovich": 42, "min": [13, 23, 27], "min_": 10, "mine": 0, "minim": [33, 38, 39], "minimium": 5, "minimum": [5, 30, 32, 42], "minor": [3, 4, 5, 6, 10, 13, 18, 21, 22, 23, 24, 30, 32], "mint": 0, "miscellan": 17, "misunderstand": 13, "mit": 13, "mix": 30, "mod": [13, 24, 42], "mode": [5, 6, 7, 8, 13, 14, 16, 17, 20, 21, 22, 23, 24, 29, 30, 31, 32, 39, 40, 42], "model": [3, 5, 6, 9, 10, 11, 13, 16, 22, 24, 26, 28, 30, 31, 32, 33, 39, 42], "modest": 13, "modif": [9, 19], "modifi": [3, 4, 5, 8, 11, 19, 24, 38], "modul": [21, 22], "modular": 13, "moment": [5, 6, 10, 22, 26, 29, 30], "moment_print_flag": [6, 7], "momentum": [5, 6, 7, 10, 13, 17, 18, 24, 32, 42], "monitor": 41, "monolith": [21, 24], "monomi": 22, "monoton": 13, "moor": 42, "more": [0, 3, 11, 13, 18, 22, 28, 29, 30, 38, 39], "moreov": [13, 16], "morph": 25, "most": [0, 5, 13, 16, 26, 28, 30, 32, 33, 34], "mostli": 13, "motiv": [3, 11, 13, 16, 25], "move": [3, 10, 11, 13], "mp": 2, "mpi": [0, 2, 5, 7, 8, 27], "mpich": [1, 2], "mst1": 42, "much": [13, 22], "multi": [11, 13, 16, 21, 39, 42], "multipl": [3, 5, 13, 24, 28, 33, 38], "multipli": [5, 30, 32], "multiscal": [3, 42], "multistream": 13, "must": [0, 5, 10, 13, 22, 38], "mw": 18, "mxh": [10, 18], "mxh3": 10, "mynick": 42, "n": [0, 4, 5, 6, 8, 10, 14, 15, 16, 17, 18, 24, 27, 31, 32, 34, 39, 42], "n_": [5, 21, 22, 24, 30, 31, 32], "n_0": 16, "n_a": [5, 7, 22, 26, 34], "n_c": 16, "n_e": [3, 5, 7, 16, 18, 24, 38], "n_energi": [6, 17, 23, 41], "n_evolv": 39, "n_field": 6, "n_global": 6, "n_mpi": 39, "n_r": 22, "n_radial": [6, 17, 23, 24], "n_speci": [6, 17, 23], "n_theta": [6, 17, 23, 24, 41], "n_toroid": 6, "n_xi": [6, 17, 23, 41], "na": 10, "nabla": [10, 16, 22, 26, 34], "name": [9, 13, 16, 19, 21, 24], "natur": 13, "nbasis_max": [17, 32], "nbasis_min": [17, 32], "nbi": 39, "ncc": [16, 42], "nclass": [21, 22, 24], "ne": [18, 22], "ne_ad": [17, 23], "nearli": 13, "need": [0, 5, 8, 14, 25, 38], "neg": [5, 10, 22, 23], "neglect": [10, 13, 16], "neglig": [5, 13], "neo": [0, 3, 9, 10, 16, 17, 25, 26, 27, 33, 34, 38, 39, 40, 42], "neo_": 21, "neo_aniso_model_in": 22, "neo_dens_in": 22, "neo_dlnndr_in": 22, "neo_dlntdr_in": 22, "neo_dlntdr_para_in": 22, "neo_dlntdr_perp_in": 22, "neo_eflux_thchi_out": 24, "neo_eflux_thhhe_out": 24, "neo_eflux_thhhi_out": 24, "neo_eflux_ths_out": 24, "neo_efluxncv_dke_out": 24, "neo_efluxncv_gv_out": 24, "neo_efluxtot_dke_out": 24, "neo_efluxtot_gv_out": 24, "neo_efluxtot_nclass_out": 24, "neo_init": 21, "neo_interfac": [21, 24], "neo_jpar_dke_out": [21, 24], "neo_jpar_nclass_out": 24, "neo_jpar_ths_out": 24, "neo_jtor_dke_out": 24, "neo_jtor_ths_out": 24, "neo_mass_in": 22, "neo_mflux_dke_out": 24, "neo_mflux_gv_out": 24, "neo_n_species_in": 21, "neo_pflux_dke_out": 24, "neo_pflux_gv_out": 24, "neo_pflux_nclass_out": 24, "neo_pflux_thhh_out": 24, "neo_pflux_thhs_out": 24, "neo_profile_dlnndr_scale_in": 22, "neo_profile_dlntdr_scale_in": 22, "neo_rotation_model": 22, "neo_run": 21, "neo_temp_in": 22, "neo_temp_para_in": 22, "neo_temp_perp_in": 22, "neo_vpol_dke_out": 24, "neo_vpol_nclass_out": 24, "neo_vtor_dke_out": 24, "neo_vtor_nclass_out": 24, "neo_z_in": 22, "neoclass": [9, 13, 21, 22, 24, 25, 26, 34, 38, 39, 42], "nersc": [8, 17, 41], "net": 13, "netcdf": 2, "network": [22, 42], "neural": 22, "neutral": [22, 26], "nevin": [13, 42], "new": [0, 3, 10, 16, 18, 25, 29, 30, 32, 39, 42], "new_eikon": [17, 32], "newton": [38, 39, 40], "nexp": 18, "next": [13, 29], "nhd": [13, 42], "ni": 18, "nion": [18, 41], "nishimura": 42, "nky": [17, 31, 32], "nl": 30, "nl00": 8, "nl01": 8, "nl_flag": 41, "nm": 31, "nmode": [17, 31, 32], "no_cbla": 0, "no_lapack": 0, "no_shar": 0, "node": [27, 30, 32], "nois": [13, 42], "nomin": 16, "nomp": [0, 8, 27], "non": [5, 13, 23, 24, 30, 32], "nonadiabat": 13, "nonaxisymmetr": [22, 42], "none": 24, "noninfring": 19, "nonlinear": [3, 5, 6, 8, 11, 14, 16, 28, 29, 41, 42], "nonlinear_flag": 6, "nonloc": [13, 42], "nonreson": 13, "nontherm": [39, 40], "nonuniform": 18, "nonuniformli": 26, "nonzero": [5, 24], "norm": [21, 22, 24, 26], "normal": [5, 6, 10, 13, 16, 17, 22, 23, 24, 30, 31, 32, 34, 38, 39], "normalzi": 38, "notat": [5, 34], "note": [5, 9, 17, 19, 22, 23, 24, 26, 28, 30, 31, 32, 38], "noth": 13, "notic": [9, 19], "nov": 30, "novel": 13, "now": 13, "nq": 4, "ns_in": 31, "nsts_crossphase_spectrum": [17, 32], "nstx": [13, 29, 30, 42], "nth": 39, "ntheta": 41, "nu": [10, 22], "nu_": 5, "nu_1": [17, 23], "nu_e": [6, 41], "nu_ei": 28, "nu_glob": 6, "nucl": 42, "nuclear": 42, "number": [5, 6, 8, 13, 16, 18, 21, 22, 23, 24, 26, 30, 32, 33, 38, 39, 40], "numer": [0, 3, 5, 8, 10, 11, 13, 17, 22, 24, 28, 41, 42], "nunami": 42, "nup_alpha": 6, "nup_radi": 6, "nup_theta": 6, "nwidth": [17, 32], "nx": 28, "nxgrid": [17, 32], "o": [5, 26], "observ": [13, 16, 26, 28], "obtain": [10, 13, 16, 19, 29, 33], "occur": 13, "octob": 42, "odd": 22, "off": [5, 39, 42], "offer": 11, "offload": [5, 6], "offset": [30, 32], "often": [0, 5, 8, 26, 30], "ohm": 42, "ohmic": [16, 18], "oint": 34, "old": 28, "older": 28, "omega": [17, 22, 34], "omega0": 18, "omega_": 26, "omega_0": [18, 22, 24, 26, 34], "omega_1": 26, "omega_intel": 27, "omega_rot": [17, 23, 26], "omega_rot_deriv": [17, 23, 26], "omp": [7, 27], "onc": [5, 27], "one": [5, 10, 13, 22, 30, 32, 38, 39], "ones": [0, 13], "onetwo": [13, 18, 25, 28], "onli": [5, 6, 11, 13, 16, 22, 23, 24, 26, 27, 28, 30, 38, 39], "open": [13, 16], "openbla": 17, "openmp": 0, "oper": [5, 13, 16, 21, 22, 33, 39, 40, 42], "operation": 38, "opposit": 13, "optim": [3, 5, 13, 42], "option": [21, 22, 41], "orbit_grid": 28, "order": [0, 4, 5, 6, 13, 16, 18, 21, 22, 23, 24, 26, 28, 30, 32, 33], "org": 2, "organ": 13, "orient": [5, 6, 17, 22], "orienti": [5, 22], "origin": [13, 28, 38, 39], "ornl": [8, 13, 42], "osx": 0, "other": [5, 10, 13, 16, 19, 22, 25, 28, 33, 39, 42], "otherwis": [9, 19, 22, 28, 30], "our": 13, "out": [5, 7, 8, 13, 16, 17, 18, 19, 22, 26, 29, 30, 32], "outboard": [5, 22, 24, 30, 32], "outer": 5, "output": [5, 8, 17, 22, 23, 25, 28, 29, 30, 31], "outward": 26, "oval": [6, 10], "over": [3, 13, 16, 18, 21, 28, 29, 31, 32], "overal": [4, 30], "overcom": 13, "overestim": 16, "overlin": 32, "overview": [13, 17], "ow": 13, "own": 0, "p": [5, 22, 26, 30, 32, 34, 38, 42], "p_": 24, "p_a": [22, 26], "p_l": 22, "p_prime_loc": [17, 32], "pa": 42, "pace": 42, "packag": 0, "page": 28, "pai": 8, "painstak": 13, "paper": [16, 34], "paradigm": [13, 42], "paradox": [13, 42], "parallel": [5, 7, 14, 18, 22, 23, 24, 26, 30, 31, 32, 33, 39, 42], "paramat": 16, "paramet": [4, 5, 13, 16, 17, 18, 21, 22, 24, 30, 31, 38, 39, 41], "parameter": [5, 10, 28, 42], "paramt": 22, "park": [17, 32], "parker": 42, "parser": 18, "part": [13, 16], "parti": [9, 19], "partial": [4, 5, 10, 22, 24, 26, 30, 32, 34, 38], "partial_t": 38, "particip": 16, "particl": [7, 13, 18, 22, 24, 26, 28, 29, 31, 32, 34, 39, 42], "particular": [13, 19], "particularli": [13, 26], "pascal": 18, "pass": [13, 30, 32, 42], "pass_grid": 28, "past": 3, "patel": 42, "pathologi": 13, "pattern": 13, "pci": 13, "peak": [13, 30, 42], "pedest": [3, 11, 38, 41], "peebl": 42, "peeter": 42, "per": [13, 27, 31, 32, 38], "perc": 13, "percent": 13, "pereverzev": 42, "perfect": 16, "perfectli": [13, 30], "perform": [13, 16, 28, 39, 41, 42], "period": [13, 22, 25], "perlmutt": [17, 41], "perlmutter_cpu": 27, "perlmutter_gpu": 27, "permiss": 19, "permit": 19, "perp": [5, 22], "perpendicular": [16, 22, 23, 41], "persist": 13, "person": 19, "perspect": 17, "perturb": [5, 13], "petascal": 42, "petti": 42, "pfirsh": 26, "pg3eq": [13, 16], "ph": 16, "phase": [16, 29, 31, 32, 42], "phd": 42, "phenomena": [3, 11, 13], "phenomenon": 13, "phi": [5, 7, 10, 14, 18, 26, 31, 32], "phi_": [22, 24, 26], "phi_0": [22, 24, 26], "phi_1": [24, 26], "php": 2, "phy": [16, 24, 42], "physic": [4, 7, 9, 13, 16, 28, 30, 39, 41, 42], "physrevlett": 42, "pi": [5, 10, 18, 22], "pi_": [7, 24, 32], "pi_1": 32, "pi_2": 32, "pi_a": [7, 34], "pi_e": 32, "pic": [13, 16], "pick": 30, "pictur": 13, "pinch": [13, 42], "pinsker": 42, "pioneer": [3, 11], "pip": 41, "pitch": [5, 6, 22, 24, 28], "pittsburgh": 42, "pivot": 39, "place": 29, "plai": [3, 11, 13, 16, 26, 29], "planck": [21, 26, 42], "plank": 22, "plasma": [3, 5, 11, 13, 16, 18, 21, 22, 24, 25, 28, 29, 39, 42], "platform": [8, 13, 17, 27, 41], "pleas": [0, 12, 18], "plot": [8, 16, 17, 28, 41], "plu": [6, 8], "pmac": 13, "pmatrix": 38, "point": [5, 13, 16, 18, 28, 38, 39], "poisson": 21, "pol": 10, "polflux": 18, "poloid": [5, 6, 10, 13, 18, 22, 23, 24, 26, 30, 32, 41, 42], "polynomi": [5, 22, 23, 24, 30, 32], "popul": 42, "popular": [3, 13, 38], "porkolab": 42, "port": [2, 13], "portion": [9, 19], "posit": [5, 10, 22], "possibl": [13, 28, 38], "possibli": 11, "potenti": [5, 13, 22, 24, 26, 30], "power": [13, 16, 17, 18, 38, 39, 40], "ppc": 13, "ppcf": 24, "pppl": 41, "practic": [13, 21, 26, 34], "pre": [11, 17, 25], "prebuilt": 17, "precis": [5, 6], "predecessor": 29, "predict": [13, 16, 28, 29, 42], "prefer": [30, 38], "prehistori": 17, "prepend": 21, "presenc": [13, 26], "present": [9, 12, 13, 16, 17, 19, 22, 24, 26, 41], "preset": 30, "pressur": [3, 5, 6, 11, 18, 22, 23, 30, 32], "prevent": [30, 32], "previou": [13, 26], "primari": [13, 21, 28, 33], "primarili": 3, "prime": [22, 34, 38], "principl": 13, "print": [5, 8, 22], "print_step": [4, 6], "prior": [13, 16], "priori": 26, "probabl": [13, 39], "problem": [5, 13, 22, 23, 38], "proce": 27, "proceed": 42, "process": [25, 39], "produc": [13, 24, 26], "product": [13, 42], "profil": [3, 5, 6, 9, 10, 11, 13, 16, 18, 21, 22, 25, 29, 33, 38, 39, 42], "profile_dlnndr_": [17, 23], "profile_dlnndr_1_scal": 22, "profile_dlnndr_2_scal": 22, "profile_dlnndr_3_scal": 22, "profile_dlntdr_": [17, 23], "profile_dlntdr_1_scal": 22, "profile_dlntdr_2_scal": 22, "profile_dlntdr_3_scal": 22, "profile_equilibrium_model": [10, 17, 23], "profile_erad0_model": [17, 23], "profile_model": [6, 17, 23, 24], "profiles_gen": [4, 17, 18, 41], "profiles_gen_plot": 41, "program": [0, 13], "progress": 13, "project": [0, 5, 13, 21, 27, 42], "pronounc": 13, "propag": 16, "proper": [10, 19], "properli": [10, 13], "properti": [5, 42], "provid": [3, 11, 13, 19, 25, 28], "pseudospectr": 5, "psfc": 41, "psi": [4, 10, 18, 22, 26, 34], "psi_": 10, "pst": 41, "ptot": 18, "public": [9, 12, 16, 17, 19], "publish": [9, 13, 16, 19], "pueschel": 42, "pull": [9, 19], "pure": [13, 16, 26], "purpos": [3, 5, 9, 19], "push": 26, "put": 38, "pygacod": 41, "python": [0, 2, 3, 7, 17], "python3": 2, "q": [4, 6, 10, 13, 17, 18, 23, 24, 26, 30, 32, 34, 38, 42], "q_": [7, 13, 24, 32, 37, 38, 39], "q_1": 32, "q_2": 32, "q_a": [7, 34], "q_e": [16, 32, 37, 38], "q_i": [37, 38], "q_loc": [17, 32], "q_prime_loc": [17, 32], "q_sa": [17, 32], "qa": [30, 32], "qbeam": [18, 37], "qbeami": [18, 37], "qbrem": [18, 37], "qcxi": [18, 37], "qei": [18, 37], "qfuse": [18, 37], "qfusi": [18, 37], "qhat": 38, "qion": [18, 37], "qioni": [18, 37], "ql": [29, 31, 32], "ql_flux_spectrum": [17, 32], "qline": [18, 37], "qmom": 18, "qohm": [18, 37], "qpar_beam": 18, "qpar_wal": 18, "qrfe": [18, 37], "qrfi": [18, 37], "qsync": [18, 37], "quad": [26, 34, 38], "quadratur": [30, 32], "qualit": 28, "qualiti": 25, "quantit": 16, "quantiti": [3, 10, 16, 21, 22, 24, 26, 38], "quasi": [22, 26, 30, 42], "quasilinear": [16, 29, 30, 32, 42], "quasineutr": [4, 5, 6, 39], "quasineutral_flag": 6, "quench": [13, 29, 30, 32, 42], "queri": 0, "question": [13, 17, 28], "queue": 8, "quick": 17, "quit": 13, "r": [0, 4, 5, 10, 12, 13, 16, 18, 21, 22, 24, 26, 30, 32, 34, 38, 42], "r_": [30, 32, 38], "r_0": [5, 10, 18, 22, 24, 26], "r_1": 38, "r_2": 38, "r_3": 38, "r_j": [24, 38], "rad": [18, 34, 37], "radial": [3, 5, 6, 11, 13, 16, 22, 23, 24, 26, 33, 38, 39, 42], "radian": 18, "radiat": [18, 34, 39], "radii": [13, 39], "radiu": [3, 4, 5, 6, 10, 13, 16, 18, 21, 22, 23, 24, 29, 30, 32, 39, 42], "rais": 0, "rang": [13, 16, 21, 22], "rangl": [26, 34], "rank": [5, 7, 30, 32], "rapid": 26, "rapidli": [38, 42], "rate": [5, 6, 13, 16, 22, 26, 28, 30, 32, 34], "rather": [7, 13, 26, 38, 39], "ratio": [5, 13, 21, 22, 24, 29, 39], "ration": 13, "rational": 25, "raw": 5, "rb_": [30, 32], "rbf": 28, "rc": 0, "rc_": [30, 32], "re": 22, "reach": 13, "reaction": 39, "reactor": [37, 39, 42], "read": [5, 7, 22, 25, 28, 34, 39], "readabl": 7, "reader": 11, "real": [3, 11, 13, 41], "realist": [13, 42], "realiti": 10, "realli": 26, "reason": 26, "recent": [11, 13, 16, 28, 29, 30], "recipi": 9, "recombin": 18, "recommend": [0, 4, 5, 7, 30], "rectangular": 24, "red": 16, "redistribut": 26, "reduc": [3, 5, 6, 11, 13, 14, 26, 38], "reduct": 13, "reed": 42, "ref": [22, 38], "refer": [5, 13, 17, 19, 24, 28], "refin": [13, 30], "reflect": 10, "refus": 16, "reg08": 8, "reg14": 18, "regard": 17, "regardless": 22, "regim": [3, 13, 16, 26], "region": [3, 11, 13, 29], "regress": [0, 8], "regular": 8, "rel": [5, 16, 22, 30], "relat": [13, 24, 26, 34], "relax": [13, 38, 39, 40], "relev": [13, 26, 42], "reliabl": 13, "remain": [13, 30], "remark": [16, 26, 29], "renorm": 39, "repeatedli": 13, "repo": [8, 27], "report": [28, 42], "repositori": [0, 17], "repres": [13, 21, 26], "represent": [10, 34, 42], "reproduc": [11, 13, 16, 30], "repsect": 30, "request": [9, 19], "requir": [3, 5, 9, 11, 13, 18, 22, 25, 26, 27, 29, 34, 42], "rescal": 16, "research": [3, 11, 13, 16, 28], "reset": 5, "residu": [13, 38, 39, 40], "resolut": [5, 22, 39, 41, 42], "resolv": [13, 30], "resourc": [13, 16, 28], "respect": [5, 21, 22, 26, 30, 32], "respond": 30, "respons": [29, 42], "restart": [5, 6, 39, 40, 41], "restart_step": 6, "restrict": [9, 13, 19, 26, 38], "result": [5, 8, 9, 11, 13, 17, 19, 26, 29, 30, 38, 42], "retain": [3, 5, 10, 13, 21], "return": [5, 14, 22, 30, 31], "rev": [16, 24, 42], "revers": [13, 42], "review": 13, "revis": 16, "rewoldt": 42, "rf": 18, "rh": [13, 22], "rh98": [13, 42], "rho": [4, 5, 16, 18, 30, 32, 42], "rho_": [4, 5, 7, 13, 16, 21, 22, 24, 28, 31, 38], "rho_i": [21, 26], "rho_ion": 30, "rho_star": [17, 23], "rhode": 42, "right": [4, 5, 10, 19, 22, 23, 24, 26, 34, 37, 38, 39], "rightarrow": [4, 5, 13, 22, 24, 38], "rigor": [13, 26], "rise": 13, "rk": 13, "rk4": 5, "rlns_1": [17, 32], "rlts_1": [17, 32], "rm": [4, 5, 7, 10, 16, 18, 21, 22, 23, 24, 26, 30, 32, 34, 38], "rmaj": [6, 10, 18], "rmaj_loc": [17, 32], "rmaj_over_a": [10, 17, 23], "rmaj_sa": [17, 32], "rmin": [6, 10, 18], "rmin_loc": [17, 32], "rmin_over_a": [10, 17, 23], "rmin_over_a_2": [17, 23], "rmin_sa": [17, 32], "roach": 42, "robust": [13, 16, 38, 39], "roger": 42, "role": [13, 16, 26, 29, 33, 42], "ron": 28, "root": [38, 39], "rosenbluth": [13, 24, 42], "rost": 42, "rotat": [5, 18, 21, 22, 28, 33, 38, 39, 42], "rotation_model": [6, 17, 23, 24], "roth": 42, "rough": 16, "roughli": [10, 13, 16, 30], "routin": [13, 39], "row": 24, "rule": [0, 29, 30, 32, 38, 39, 40, 42], "run": [0, 5, 10, 13, 14, 21, 22, 24, 27, 29, 30, 39], "runawai": 13, "rung": 13, "runtim": 24, "s0021": 42, "s_": [5, 10, 22, 34], "s_1": 10, "s_2": 10, "s_3": 10, "s_delta": [6, 10, 17, 23], "s_delta_loc": [17, 32], "s_e": 38, "s_i": [26, 38], "s_kappa": [6, 10, 17, 23], "s_kappa_loc": [17, 32], "s_n": 10, "s_w": 34, "s_zeta": [6, 10, 17, 23], "s_zeta_loc": [17, 32], "s_zmag": [10, 17, 23], "safe": 39, "safeti": [0, 5, 6, 10, 13, 18, 22, 23, 24, 30, 32, 42], "sai": [0, 26], "same": [11, 13, 16, 26, 28, 39], "sampl": [18, 27, 39], "san": 42, "santoro": 42, "sat0": [29, 30], "sat1": [29, 30, 32], "sat2": [29, 30], "sat3": [29, 30], "sat_geo_spectrum": [17, 32], "sat_rul": [17, 31, 32], "satur": [13, 16, 30, 31, 32, 42], "sauter": 24, "save": 5, "sbc": [29, 30, 42], "sc2004": 42, "scalar": [26, 31, 32], "scalar_saturation_paramet": [17, 32], "scale": [4, 5, 6, 10, 13, 16, 22, 23, 24, 26, 30, 39, 40, 42], "scan": [13, 16], "scatter": 28, "scb": [29, 30, 42], "scenario": [17, 18, 33, 39, 40, 42], "scheme": [5, 13, 22, 38, 39, 40], "schh16": [29, 30, 42], "schl\u00fcter": 26, "schmitz": 42, "schumak": 42, "sci": 42, "scidac": [13, 42], "scienc": 17, "scratch": [3, 11], "screen": 8, "script": 8, "scw": [29, 42], "seamlessli": 13, "search": [30, 32], "second": [4, 24, 26, 28, 39], "section": 26, "see": [4, 5, 9, 18, 22, 26, 29, 30, 32, 33, 39], "seem": 13, "seen": 28, "select": [2, 5, 6, 22], "selector": [5, 6, 23], "self": [5, 6, 13, 24, 30, 32, 39, 42], "selfupd": 2, "send": [9, 41], "sensit": 16, "separ": [13, 16, 25], "seri": [16, 24, 28, 42], "serial": [17, 39], "serv": 28, "set": [0, 2, 4, 5, 8, 13, 21, 22, 26, 28, 30, 31, 32, 39], "setup": 27, "sever": 13, "sevil": 42, "sfiligoi": [41, 42], "sgi": 13, "sh01": [13, 42], "sh98": [26, 34, 42], "shafer": 42, "shafranov": [5, 6, 10, 22, 23, 30], "shall": [9, 19], "shampin": 5, "shan": 42, "shape": [3, 5, 10, 13, 16, 18, 21, 22, 25, 29, 39, 42], "shape_cos0": [6, 10, 17, 18], "shape_cos1": [6, 10, 17, 18], "shape_cos2": [6, 10, 17, 18], "shape_cos3": [6, 10, 17, 18], "shape_s_cos0": [6, 10, 17], "shape_s_cos1": [6, 10, 17], "shape_s_cos2": [6, 10, 17], "shape_s_cos3": [6, 10, 17], "shape_s_sin3": [6, 10, 17], "shape_sin3": [6, 10, 17, 18], "share": [0, 27, 39], "shat_sa": [17, 32], "shear": [5, 6, 10, 13, 16, 17, 23, 24, 26, 29, 30, 32, 42], "shell": 0, "shend": 42, "shift": [6, 10, 13, 17, 23, 29, 30, 31, 32], "shirai": 42, "short": [6, 7, 13, 15, 23, 24, 32, 40], "shorter": 5, "shortfal": [17, 20, 42], "shorthand": 38, "shot": 28, "should": [0, 4, 5, 8, 22, 23, 24, 28, 39], "show": [8, 13, 16, 26, 39], "shown": [10, 13, 16, 23, 28], "shrinkag": 39, "shumak": 42, "shut": 39, "side": 13, "sigma": [24, 38], "sigmar": [22, 24, 39], "sign": [10, 22, 23, 30, 32], "sign_bt": [17, 32], "sign_it": [17, 32], "signal": 39, "signific": [5, 13, 16], "significantli": [13, 16], "silent": 6, "silent_flag": [6, 17, 23, 24], "sim": 38, "sim_model": [17, 23, 24], "simeq": [26, 38], "similar": [13, 26, 28, 42], "simpl": [5, 8, 29, 31, 39], "simpli": 39, "simplif": 34, "simplifi": [13, 30], "simul": [3, 5, 6, 7, 9, 11, 14, 17, 18, 22, 23, 25, 28, 29, 30, 33, 39, 40, 41, 42], "simultan": [13, 16, 39], "sin": [10, 24], "sinc": [13, 21, 28], "sine": 24, "singl": [0, 5, 6, 13, 26, 28, 30, 32], "singular": [5, 13], "size": [4, 6, 13, 16, 40, 41, 42], "sj": 24, "sk10": [9, 42], "sk_": [30, 32], "skw05": [13, 42], "skw07": [3, 9, 11, 13, 29, 30, 42], "slightli": [5, 13, 28], "slow": 16, "slowdown": 13, "slower": 5, "small": [5, 13, 26, 28], "smaller": [5, 13, 14, 16, 39], "smith": 42, "smoooth": 42, "smooth": 38, "snave": 42, "snyder": [13, 42], "so": [5, 6, 13, 16, 19, 22, 25, 27, 28, 30, 33, 38, 39], "soc": 42, "softwar": [9, 13, 19, 27], "solid": 16, "solomon": 42, "solut": [17, 22, 24, 29, 39, 42], "solv": [13, 17, 21, 22, 24, 29, 33, 38, 39], "solver": [3, 11, 17, 21, 22, 33, 42], "some": [11, 13, 17, 23, 28, 34], "sometim": 14, "somewhat": 13, "sonic": [5, 17, 21, 22, 24], "sort": [13, 30, 32], "sound": [3, 7, 13, 16], "sourc": [5, 6, 13, 17, 18, 19, 22, 25, 33, 38, 39, 41], "space": [3, 5, 11, 22, 23, 28, 30, 32, 42], "spain": 42, "span": [5, 13], "spars": 33, "spatial": [13, 16, 22], "speak": 13, "speci": [5, 11, 18, 21, 22, 26, 28, 30, 31, 39, 42], "species1": 22, "specif": [0, 3, 5, 18, 24, 26, 38], "specifi": [5, 18, 22, 23, 25, 39], "spectra": [13, 16, 31, 32], "spectral": [3, 13, 29, 30, 31, 32, 42], "spectral_shift": [17, 32], "spectroscopi": 16, "spectrum": [13, 30, 31, 32], "speed": [3, 5, 6, 7, 22, 24, 26], "spitzer": [22, 23], "spitzer_model": [17, 23], "split": [4, 25], "spot": 16, "spread": 13, "spring": 13, "sqrt": [3, 7, 16, 21, 22, 24], "squar": [5, 6, 10, 16, 18, 22, 23, 30, 32], "src": 8, "sreepathi": 42, "ss": 22, "stabil": [13, 29, 42], "stabl": 13, "staebler": 42, "staff": 13, "stage": 5, "standard": [3, 4, 5, 10, 13, 17, 22, 25, 26, 28, 30, 32, 39], "star": 42, "start": [13, 18, 28, 39], "startup": 39, "state": [13, 33, 38, 42], "statefil": 25, "static": [37, 39], "statist": [7, 13], "statu": 42, "steadi": [13, 33, 38, 42], "steep": 26, "steeper": [3, 11], "step": [4, 5, 13, 17, 27, 38, 39, 40], "stiff": 39, "still": [13, 38], "storag": 42, "store": [30, 32], "strategi": [17, 41], "strength": [10, 22], "stress": [31, 32], "stripe": 5, "strong": [13, 16, 22, 24, 26], "strongli": [8, 18, 28], "structur": 13, "student": 13, "studi": [13, 17, 26, 28, 42], "subdomin": 13, "subject": [9, 19, 26, 41], "submiss": 13, "submit": 8, "subroutin": [17, 21, 22], "subscript": 26, "substanti": [9, 19], "substitut": 26, "subtl": 26, "success": [0, 13, 16], "successfulli": [13, 16], "sudo": [1, 2], "suffer": 13, "suffici": [4, 18], "sugama": [5, 6, 17, 24, 26, 34, 42], "suggest": [3, 8, 13, 24, 33], "suit": [0, 13], "suitabl": [0, 3, 11, 25], "sum": [18, 26, 31, 32, 38], "sum_": [10, 24], "sum_a": [22, 34], "sum_flux_spectrum": [17, 32], "sum_p": 39, "summar": [13, 34], "summari": [11, 16, 28], "summer": 25, "sung": 42, "supercomput": [13, 42], "support": [13, 39], "suppress": [10, 26, 42], "surfac": [5, 13, 17, 18, 21, 22, 24, 26, 30, 32, 34, 42], "surprisingli": 29, "svpablo": 13, "swck13": [29, 30, 42], "switch": [7, 13, 30], "swnn11": [26, 42], "symbol": [10, 23], "symmetr": [5, 6, 10, 22], "symmetri": 6, "synchrotron": 18, "synopsi": 17, "synthet": [13, 28, 42], "system": [3, 5, 8, 10, 13, 22, 26, 29, 30, 32, 38, 41], "systemat": [13, 28], "t": [5, 7, 8, 10, 13, 16, 24, 26, 28, 30, 32, 34, 38, 41, 42], "t_": [5, 16, 21, 22, 24, 26, 30, 32, 38], "t_0": 16, "t_a": 22, "t_e": [3, 5, 7, 13, 16, 18, 24, 38, 39], "t_i": [13, 26, 38, 39], "ta": [22, 24], "tabl": [5, 14, 17, 22, 26, 29, 30, 31], "tabular": [3, 11, 17, 33], "tag": 7, "taguchi": 24, "tajima": 42, "take": [13, 23, 24], "taken": [16, 28, 38], "talk": [41, 42], "tang": 42, "tardini": 42, "target": [13, 38, 39], "task": [0, 7, 8], "tau": 13, "tau_": [22, 24], "taus_1": [17, 32], "tdg": [29, 42], "te": [4, 18, 22, 42], "te_ad": [17, 23], "team": 42, "tech": 42, "technic": [10, 13, 42], "tem": [13, 29, 30], "temp": [5, 22], "temp_": [6, 17, 23], "temp_1": [5, 22], "temp_2": 22, "temp_3": 22, "temp_para_": [17, 23], "temp_para_1": 22, "temp_para_2": 22, "temp_para_3": 22, "temp_perp_": [17, 23], "temp_perp_1": 22, "temp_perp_2": 22, "temp_perp_3": 22, "temperatur": [3, 5, 6, 13, 18, 21, 22, 23, 24, 26, 28, 29, 30, 31, 32, 33, 38, 39, 40, 42], "temperature_spectrum": [17, 32], "temperaur": 23, "templat": [0, 8], "ten": 13, "tend": 13, "term": [5, 6, 13, 16, 21, 22, 24, 26, 30, 32, 38], "test": [0, 5, 6, 8, 9, 13, 16, 19, 22, 28], "text": [13, 26, 28, 29, 34, 38], "tftr": 29, "tg": 24, "tglf": [0, 3, 9, 11, 13, 17, 28, 33, 42], "tglf1": 39, "tglf2": 39, "tglf3": 39, "tglf4": 39, "tglf_adiabatic_elec_in": 32, "tglf_alpha_e_in": 32, "tglf_alpha_mach_in": 32, "tglf_alpha_p_in": 32, "tglf_alpha_quench_in": 32, "tglf_alpha_sa_in": 32, "tglf_as_in": 32, "tglf_b_model_sa_in": 32, "tglf_betae_in": 32, "tglf_debye_factor_in": 32, "tglf_debye_in": 32, "tglf_delta_loc_in": 32, "tglf_drmajdx_loc_in": 32, "tglf_drmindx_loc_in": 32, "tglf_dzmajdx_loc_in": 32, "tglf_elec_eflux_out": 32, "tglf_elec_mflux_out": 32, "tglf_elec_pflux_out": 32, "tglf_etg_factor_in": 32, "tglf_filter_in": 32, "tglf_find_width_in": 32, "tglf_ft_model_sa_in": 32, "tglf_gchat_in": 32, "tglf_geometry_flag_in": 32, "tglf_ghat_in": 32, "tglf_gradb_factor_in": 32, "tglf_ibranch_in": [30, 32], "tglf_iflux_in": 32, "tglf_ion1_eflux_out": 32, "tglf_ion1_mflux_out": 32, "tglf_ion1_pflux_out": 32, "tglf_ion2_eflux_out": 32, "tglf_ion2_mflux_out": 32, "tglf_ion2_pflux_out": 32, "tglf_kappa_loc_in": 32, "tglf_kx0_in": 32, "tglf_ky_in": 32, "tglf_kygrid_model_in": 32, "tglf_linsker_factor_in": 32, "tglf_mass_in": 32, "tglf_nbasis_max_in": 32, "tglf_nbasis_min_in": 32, "tglf_new_eikonal_in": [30, 32], "tglf_nky_in": 32, "tglf_nmodes_in": 32, "tglf_ns_in": 32, "tglf_nwidth_in": 32, "tglf_nxgrid_in": 32, "tglf_p_prime_loc_in": 32, "tglf_park_in": 32, "tglf_q_loc_in": 32, "tglf_q_prime_loc_in": 32, "tglf_q_sa_in": 32, "tglf_rlns_in": 32, "tglf_rlts_in": 32, "tglf_rmaj_loc_in": 32, "tglf_rmaj_sa_in": 32, "tglf_rmin_loc_in": 32, "tglf_rmin_sa_in": 32, "tglf_s_delta_loc_in": 32, "tglf_s_kappa_loc_in": 32, "tglf_s_zeta_loc_in": 32, "tglf_sat_rule_in": 32, "tglf_shat_sa_in": 32, "tglf_sign_bt_in": 32, "tglf_sign_it_in": 32, "tglf_taus_in": 32, "tglf_theta0_sa_in": 32, "tglf_theta_trapped_in": 32, "tglf_tm": 32, "tglf_use_bisection_in": 32, "tglf_use_bpar_in": 32, "tglf_use_bper_in": 32, "tglf_use_inboard_detrapped_in": 32, "tglf_use_mhd_rule_in": 32, "tglf_use_transport_model_in": 32, "tglf_vexb_in": 32, "tglf_vexb_shear_in": 32, "tglf_vpar_in": 32, "tglf_vpar_model_in": 32, "tglf_vpar_shear_in": 32, "tglf_vpar_shear_model_in": 32, "tglf_wd_zero_in": 32, "tglf_width_in": 32, "tglf_width_min_in": 32, "tglf_write_wavefunction_flag_in": 32, "tglf_xnu_factor_in": 32, "tglf_xnu_model_in": 32, "tglf_xnue_in": 32, "tglf_xwell_sa_in": 32, "tglf_zeff_in": 32, "tglf_zeta_loc_in": 32, "tglf_zmaj_loc_in": 32, "tglf_zs_in": 32, "tgyro": [9, 17, 18, 24, 27, 42], "tgyro_den_method": [17, 40], "tgyro_den_method0": 39, "tgyro_den_method1": 39, "tgyro_den_method2": 39, "tgyro_den_method3": 39, "tgyro_den_method4": 39, "tgyro_iteration_method": [17, 40], "tgyro_mod": [17, 40], "tgyro_neo_method": [17, 40], "tgyro_relax_iter": [17, 40], "tgyro_rmax": 39, "tgyro_therm_flag": [17, 40], "tgyro_therm_flag1": 39, "tgyro_write_profiles_flag": [17, 40], "than": [4, 5, 13, 26, 30, 32, 38, 39], "thank": 28, "thei": [13, 21], "them": 26, "themselv": 22, "theoret": [17, 34], "theori": [10, 13, 17, 21, 22, 27, 28, 34, 39, 42], "thermal": [13, 16, 18, 22, 24, 26, 39, 40, 42], "thermodiffus": 16, "thermonuclear": 39, "thermostat": 42, "thesi": [13, 16, 42], "theta": [5, 6, 7, 10, 16, 22, 24, 26, 30, 32, 34], "theta0_sa": [17, 32], "theta_0": [5, 41], "theta_i": 5, "theta_j": 24, "theta_r": 10, "theta_trap": [17, 32], "thi": [0, 3, 5, 8, 9, 10, 11, 13, 14, 16, 19, 21, 22, 25, 26, 27, 28, 29, 30, 31, 32, 34, 38, 39], "thing": 16, "third": [9, 19], "thome": 42, "those": [13, 21, 28], "though": 38, "thousand": [3, 11, 13], "thread": [0, 7], "three": [16, 38], "threed": 22, "threed_exb_dphi0dr": [17, 23], "threed_exb_model": [17, 23], "threed_model": [17, 23], "threshold": [13, 30, 32], "through": [17, 26], "throughout": 26, "thu": [5, 10, 13, 22, 26, 38], "thursdai": 41, "ti": [4, 13, 18, 42], "tild": 31, "tilt": [6, 10, 18], "tim": 29, "time": [3, 4, 5, 10, 13, 14, 16, 22, 24, 26, 27, 28, 30, 32, 33, 38, 41], "timer": 7, "timestamp": 7, "timestep": [4, 5, 13, 41], "tn": 42, "tobia": 28, "togeth": [5, 21], "toggl": [5, 6, 39, 40], "tokamak": [10, 13, 26, 28, 29, 42], "told": 42, "toler": [4, 5, 6], "tool": [2, 4, 13, 18, 21, 25, 27, 28, 42], "top": [0, 30, 32], "topic": [9, 16, 28, 42], "tor": [10, 28, 30, 32], "torodi": 22, "toroid": [3, 5, 10, 13, 16, 18, 22, 23, 24, 26, 30, 31, 32, 42], "torqu": [18, 26], "tort": 19, "toru": [5, 22], "tot": [37, 39], "total": [0, 18, 22, 24, 31, 38, 39], "toward": [3, 11, 13], "transform": [24, 39], "transit": 13, "transp": 25, "transport": [3, 5, 9, 10, 11, 17, 19, 22, 25, 26, 28, 29, 32, 38, 39, 42], "transvers": [30, 32], "trap": [4, 13, 16, 26, 29, 30, 32, 42], "trap_grid": 28, "trapezoid": 38, "treat": [3, 5, 13, 21, 22, 26, 30], "treatment": [10, 42], "triangular": [5, 6, 10, 18, 22, 23, 30, 32], "trigger": [5, 13], "true": [13, 26, 30, 32, 38], "truli": 16, "truncat": 38, "truth": 13, "tsujii": 42, "tube": [13, 16], "tur": 34, "turb": 38, "turbul": [3, 11, 13, 19, 26, 28, 34, 38, 42], "turco": 42, "tutori": 28, "two": [3, 16, 28, 30, 32, 38, 42], "tynan": 42, "type": [0, 8, 18, 30, 31, 32], "typic": [5, 10, 13, 22, 25], "u": [6, 9, 13, 24, 26, 30, 42], "u_": [24, 26], "ubuntu": 0, "ucsd": 13, "udsymmetry_flag": 6, "uk": 42, "uncertainti": [13, 16], "unchang": [5, 13, 39], "under": [13, 26], "underestim": 16, "underli": [13, 26], "underpredict": [13, 16], "understand": [3, 11, 34], "unequ": 39, "unifi": 17, "unimport": [5, 14], "uniqu": [25, 38], "unit": [3, 4, 5, 7, 10, 17, 18, 21, 22, 24, 31, 32, 34], "uniti": 39, "units_in": 32, "univ": 16, "univers": [13, 42], "unless": 28, "unlik": [5, 33], "unperturb": 16, "unphys": 30, "unpublish": 13, "unsolv": 13, "unstabl": [5, 13, 30, 32], "unsubstanti": 13, "until": 13, "up": [0, 6, 16, 18, 21, 24, 28, 30, 32], "up_alpha": 6, "up_radi": 6, "up_theta": 6, "updat": [5, 6, 9, 28, 38, 40], "upgrad": 42, "upon": 13, "upper": 22, "upshift": 13, "upwind": [5, 6, 42], "upwind_single_flag": 6, "urban": 17, "urg": 28, "url": [12, 42], "us": [0, 3, 4, 5, 6, 7, 8, 9, 10, 12, 13, 16, 17, 18, 19, 21, 22, 25, 26, 27, 28, 29, 30, 31, 32, 33, 38, 39, 41, 42], "usag": [5, 7], "use_bisect": [17, 32], "use_bp": [17, 32], "use_bpar": [17, 32], "use_inboard_detrap": [17, 32], "use_lock": 0, "use_mhd_rul": [17, 32], "use_thread": 0, "use_transport_model": [17, 32], "user": [0, 3, 5, 17, 19, 30, 32, 33, 42], "usernam": 9, "usual": [5, 26], "util": 13, "v": [2, 21, 22, 23, 24, 26, 28, 34, 38, 42], "v_": [22, 24, 26, 30, 32], "v_a": 7, "v_i": 5, "valid": [11, 13, 17, 24, 26, 28, 42], "valu": [4, 5, 7, 13, 14, 16, 22, 23, 24, 28, 30, 32, 39, 42], "van": 42, "vanish": 13, "varepsilon": 22, "varepsilon_": [5, 24], "vari": [13, 16, 26], "variabl": [13, 17, 34, 38], "variant": [13, 38], "variat": [3, 11, 13, 24, 38, 39], "variou": [7, 13, 21, 28], "varphi": [5, 10, 22, 24, 26, 34], "vathd": [13, 42], "vector": [7, 13, 22, 24, 38], "veloc": [3, 5, 6, 18, 21, 22, 23, 26, 28, 30, 31, 32, 41, 42], "velocity_ord": 6, "veri": [5, 8, 16], "verif": [11, 13, 17, 28, 42], "verifi": [13, 16], "verner": 5, "version": [7, 9, 28, 30, 39], "versu": [7, 16, 41], "vertic": 16, "vetter": [13, 42], "vexb": [17, 32], "vexb_shear": [17, 32], "via": [10, 13, 16, 17, 22, 23, 42], "view": [5, 13, 22], "virtual": 41, "visual": 41, "vol": [24, 42], "voltag": 13, "volum": [34, 38], "vpar": [30, 32], "vpar_1": [17, 32], "vpar_model": [17, 32], "vpar_shear_1": [17, 32], "vpar_shear_model": [17, 32], "vpol": 18, "vtor": 18, "w": [8, 24, 27, 34, 42], "w_a": 34, "wa": [0, 3, 10, 11, 13, 16, 21, 25, 26, 33, 38], "wabc06": [13, 42], "wai": [26, 38], "wal05": [13, 42], "wall": [18, 27, 34], "waltz": [4, 12, 13, 42], "wan": 42, "warranti": 19, "wast": 13, "watanab": 42, "wathd": [13, 42], "wave": [13, 16, 30, 42], "wavelength": [5, 13, 26], "wavenumb": [3, 4, 5, 6, 11], "wc05": [13, 42], "wcc": [13, 42], "wcf07": [13, 42], "wch": [13, 42], "wcp06": [13, 42], "wcr02": [13, 42], "wd_zero": [17, 32], "we": [0, 4, 5, 7, 10, 11, 13, 16, 22, 24, 26, 27, 28, 29, 33, 34, 38], "weak": [5, 38], "weaker": 13, "weber": 18, "weight": [7, 29, 30, 31, 32], "welcom": [9, 19, 28], "well": [13, 16, 21, 26, 28, 30, 32], "were": [13, 16, 29], "wh08": [13, 42], "what": [0, 4, 6, 8, 13, 18], "whatsoev": 13, "when": [0, 3, 4, 5, 11, 13, 21, 22, 24, 30, 31, 32, 38, 39], "where": [3, 4, 5, 10, 11, 13, 16, 22, 24, 26, 29, 30, 34, 38, 39], "wherea": [4, 10, 13, 26], "wherev": 13, "whether": [13, 19, 22, 23], "which": [3, 4, 5, 10, 11, 13, 16, 22, 25, 26, 28, 29, 31, 32, 38, 39], "while": [16, 22, 28, 38, 39], "white": [28, 42], "whiteros": 42, "who": 26, "whom": 19, "why": [4, 13], "wide": [13, 16, 21], "widehat": 38, "width": [13, 17], "width_min": [17, 32], "wiki": 13, "william": 42, "winter": 13, "within": [13, 16], "without": [16, 19, 26, 38], "wkm94": [13, 42], "wkmh95": [13, 42], "wolf": 42, "wong": [22, 26, 42], "word": 10, "work": [4, 13, 16, 17, 26, 28, 30, 41], "worker": 13, "workshop": [17, 20], "worldwid": 13, "worlei": [13, 42], "would": [5, 8, 10, 38], "write": [8, 26, 34, 39, 40], "write_wavefunction_flag": [17, 32], "written": [5, 13, 16, 22, 24, 38, 39], "wrote": 4, "ws08": [13, 42], "wsch07": [13, 42], "wsd": [13, 42], "wsm": [13, 28, 42], "wukitch": 42, "www": 2, "x": [30, 32, 34, 38, 42], "x1": [13, 42], "x_": 24, "x_a": [22, 24], "xcode": 2, "xd1": [13, 42], "xi": [5, 6, 22, 23, 24], "xi_i": 5, "xnu_factor": [17, 32], "xnu_model": [17, 32], "xnue": [17, 32], "xquartz": 2, "xt3": [13, 42], "xwell_sa": [17, 32], "y": [30, 32, 34, 42], "yann": 28, "year": [11, 13, 28], "yearli": 17, "yield": 13, "york": 42, "you": [0, 4, 8, 17, 30], "your": [8, 9, 17, 41], "z": [10, 22, 34, 38, 39, 42], "z0": 22, "z_": [6, 17, 18, 23, 24, 30, 32, 38, 39], "z_0": [5, 10, 18, 22], "z_1": [5, 22], "z_2": [5, 22], "z_3": [5, 22], "z_a": 26, "z_c": 16, "z_e": 38, "z_eff": 18, "z_i": 38, "zeeland": 42, "zeff": [17, 32], "zeng": 42, "zero": [5, 13, 22, 30, 32, 39], "zeroth": [22, 24, 26, 39], "zeta": [6, 10, 17, 18, 23, 30, 32], "zeta_loc": [17, 32], "zf": 30, "zf_test_mod": 6, "zhang": 42, "zhu": 42, "zmag": [6, 10, 18], "zmag_over_a": [10, 17, 23], "zmaj_loc": [17, 32], "zonal": [5, 6, 13, 30, 42], "zoom": 41, "zs_1": [17, 32], "\u03b1": 42}, "titles": ["Build on your laptop", "Ubuntu/Mint", "OSX Sonoma", "CGYRO", "FAQ", "Alphabetical list for input.cgyro", "Tabular list for input.cgyro", "CGYRO output files", "Running Cases", "Download and user agreement", "FLUX-SURFACE GEOMETRY", "GYRO", "Gallery of classic GYRO images (circa 2003)", "Gyrokinetic Simulation in the 2000s", "Alphabetical list for input.gyro", "Tabular list for input.gyro", "GYRO verification and validation (pre 2010)", "The General Atomics GACODE Suite", "input.gacode", "GACODE License", "Miscellaneous", "NEO", "Alphabetical list for input.neo", "Parameters for input.neo", "NEO Output Files", "profiles_gen", "PLASMA ROTATION THEORY", "Prebuilt Environments", "DIII-D L-mode shortfall", "TGLF", "Alphabetical list for input.tglf", "Alphabetical list for out.tglf files", "Table of inputs and outputs", "TGYRO", "Equations solved in TGYRO", "OUTPUT", "PLOT", "Scenarios and connection to energy sources", "TGYRO solver algorithm", "input.tgyro Alphabetical List", "input.tgyro Tabular List", "CGYRO Workshop 2022", "References"], "titleterms": {"": [5, 32], "2000": 13, "2001": 16, "2002": 13, "2003": [12, 13], "2004": [13, 16], "2005": 13, "2006": [13, 16], "2007": 13, "2008": 13, "2009": [13, 16], "2010": 16, "2013": 28, "2022": 41, "25": 28, "A": 13, "BES": 16, "The": [13, 17, 26], "_scale": 22, "abstract": 16, "access": 9, "acknowledg": 28, "ad": 28, "adiabat": 16, "adiabatic_elec": 30, "advanc": 6, "against": 29, "agenda": 41, "agreement": 9, "algorithm": 38, "alpha": 32, "alpha_": 30, "alpha_mach": 30, "alpha_p": 30, "alpha_quench": 30, "alpha_sa": 30, "alpha_zf": 30, "alphabet": [5, 14, 22, 30, 31, 39], "amp": 5, "amp0": 5, "amp_phi_n": 14, "aniso_model_": 22, "anomal": 16, "appropri": [9, 42], "ar": 13, "as_1": 30, "ask": 3, "atom": 17, "b_model_sa": 30, "balanc": 26, "base": 16, "basi": 26, "batch": 8, "benchmark": 28, "beta": 30, "beta_star": 22, "beta_star_scal": 5, "betae_unit": 5, "betae_unit_scal": 5, "bound": 10, "box": 10, "box_siz": 5, "btccw": [5, 22], "build": 0, "c": 16, "can": 13, "case": [3, 8, 16], "cer": 16, "cgyro": [3, 5, 6, 7, 41], "chang": 32, "circa": 12, "classic": 12, "code": [0, 3, 9, 13, 17, 28], "coeffici": 16, "collis": 6, "collision_ene_diffus": 5, "collision_ene_restor": 5, "collision_field_model": 5, "collision_full_strip": 5, "collision_kperp": 5, "collision_model": [5, 22], "collision_mom_restor": 5, "collision_precision_mod": 5, "command": 8, "comment": 38, "common": 7, "comparison": 16, "compression": 16, "comput": [13, 38], "concept": 0, "connect": [26, 34, 37], "consider": 26, "consist": 26, "control": [6, 15, 32, 40], "coordin": 10, "correctli": 13, "cpu": 27, "cross": 28, "cyclon": 16, "d": [16, 28], "data": [3, 7, 16, 21, 26, 29, 33], "deby": 30, "debye_factor": 30, "delta": [5, 22], "delta_loc": 30, "delta_t": 5, "delta_t_method": 5, "dens_": [5, 22], "densiti": 34, "density_spectrum": 31, "depend": [7, 23], "descript": 24, "design": 13, "detail": 24, "diagnost": 16, "differ": 13, "diii": [16, 28], "discret": 38, "dissip": 6, "dlnndr_": [5, 22], "dlnndre_ad": 22, "dlntdr_": [5, 22], "dlntdr_para_": 22, "dlntdr_perp_": 22, "dlntdre_ad": 22, "doppler": 16, "download": 9, "dphi0dr": 22, "dramat": 13, "drmajdx_loc": 30, "drmindx_loc": 30, "dzmag": 5, "dzmajdx_loc": 30, "e_max": 5, "effect": [10, 13, 23], "eigenvalue_spectrum": 31, "electromagnet": 16, "electron": 16, "energet": 16, "energi": [34, 37], "environ": [0, 27], "epar0": 22, "epar0_spitz": 22, "equat": [33, 34], "equil": 24, "equilibria": 10, "equilibrium": [17, 23], "equilibrium_model": [5, 22], "error_tol": 5, "etg_factor": 30, "eulerian": 13, "exampl": 8, "exp_norm": 24, "experiment": [24, 26, 28, 29], "extra": 23, "f": 24, "faq": 4, "fast": 16, "feedback": 40, "field": [6, 10], "field_print_flag": 5, "field_spectrum": 31, "file": [0, 6, 7, 18, 24, 31, 32], "filter": 30, "find_width": 30, "first": 0, "flux": [10, 34], "forc": 26, "formal": 26, "formul": 38, "freq_tol": 5, "frequent": 3, "from": 13, "ft_model_sa": 30, "full": 13, "ga": 27, "gacod": [17, 18, 19], "galleri": 12, "gamma_": 5, "gamma_e_scal": 5, "gamma_p": 5, "gamma_p_scal": 5, "gaussian": 32, "gchat": 30, "gener": [17, 23], "geo_ni": 22, "geo_yin": 22, "geometri": [6, 10, 17, 23, 32], "geometry_flag": 30, "gflux_print_flag": 5, "ghat": 30, "gkw": 28, "global": [6, 13, 16], "gpu": 27, "gpu_bigmem_flag": 5, "gradb_factor": 30, "gradient": 16, "grid": [24, 38], "gyro": [11, 12, 14, 15, 16, 28], "gyrobohm": 13, "gyrokinet": [13, 16], "h_print_flag": 5, "have": 13, "high": 40, "histori": [13, 25], "ibranch": 30, "iflux": 30, "imag": 12, "impur": 16, "inadequ": 13, "independ": 7, "input": [3, 5, 6, 14, 15, 18, 21, 22, 23, 26, 30, 32, 33, 39, 40], "intensity_spectrum": 31, "interfac": [23, 33], "ipccw": [5, 22], "iter": 40, "jacobian": 38, "jan": 28, "kappa": [5, 22], "kappa_loc": 30, "kei": 28, "kx0_loc": 30, "ky": [5, 30], "kygrid_model": 30, "l": 28, "lambda_deby": 5, "lambda_debye_scal": 5, "laptop": 0, "legend": 13, "level": 40, "licens": 19, "limit": [13, 16], "line": 8, "link": [11, 21, 29, 33], "linsker_factor": 30, "list": [5, 6, 14, 15, 22, 30, 31, 39, 40], "loc_betae_scal": 39, "loc_dx": 39, "loc_dx_max": 39, "loc_er_feedback_flag": 39, "loc_evolve_grad_only_flag": 39, "loc_he_feedback_flag": 39, "loc_lock_profile_flag": 39, "loc_relax": 39, "loc_residual_method": 39, "loc_restart_flag": 39, "loc_scenario": 39, "loc_te_feedback_flag": 39, "loc_ti_feedback_flag": 39, "local": [13, 16], "mach": 5, "mach_scal": 5, "magnet": 10, "mass_": [5, 22], "mass_1": 30, "match": 16, "max_tim": 5, "method": 10, "miller": 32, "mint": 1, "miscellan": 20, "mod": 16, "mode": 28, "model": [23, 29], "moment_print_flag": 5, "momentum": 34, "mpi_rank_ord": 5, "n": 30, "n_energi": [5, 22], "n_field": 5, "n_global": 5, "n_radial": [5, 22], "n_speci": [5, 22], "n_theta": [5, 22], "n_toroid": 5, "n_xi": [5, 22], "nbasis_max": 30, "nbasis_min": 30, "ne_ad": 22, "necessari": 13, "neo": [21, 22, 23, 24], "nersc": 27, "new_eikon": 30, "nky": 30, "nmode": 30, "nonaxisymmetr": 23, "nonlinear": 13, "nonlinear_flag": 5, "normal": [3, 7, 21], "nsts_crossphase_spectrum": 31, "nu_1": 22, "nu_e": 5, "nu_glob": 5, "numer": [6, 23], "nup_alpha": 5, "nup_radi": 5, "nup_theta": 5, "nwidth": 30, "nxgrid": 30, "omega": 27, "omega_rot": 22, "omega_rot_deriv": 22, "openbla": 0, "orient": 10, "osx": 2, "out": [24, 31], "output": [3, 6, 7, 21, 24, 32, 33, 35], "overview": [3, 11, 18, 25, 28, 29, 33], "own": 32, "p_prime_loc": 30, "parallel": 13, "paramet": [6, 10, 15, 23, 26, 32, 40], "park": 30, "particl": 16, "pci": 16, "perlmutt": 27, "perspect": 13, "perturb": 16, "phi": 24, "physic": [6, 17, 23, 26, 40], "plasma": [6, 17, 23, 26], "platform": 0, "plot": [3, 33, 36], "power": 34, "pre": 16, "prebuilt": 27, "prehistori": 13, "present": 28, "print_step": 5, "profil": [17, 23, 24, 26, 28, 40], "profile_dlnndr_": 22, "profile_dlntdr_": 22, "profile_equilibrium_model": 22, "profile_erad0_model": 22, "profile_model": [5, 22], "profiles_gen": 25, "public": [13, 28], "px0": 5, "python": 33, "q": [5, 22], "q_loc": 30, "q_prime_loc": 30, "q_sa": 30, "ql_flux_spectrum": 31, "quasineutral_flag": 5, "question": 3, "quick": [8, 11, 21, 29, 33], "refer": [9, 29, 42], "reflectomet": 16, "regard": 38, "relat": 6, "repositori": 9, "resolut": [6, 13, 23], "restart": 7, "restart_step": 5, "result": [16, 28], "rho_star": 22, "risk": 32, "rlns_1": 30, "rlts_1": 30, "rmaj": 5, "rmaj_loc": 30, "rmaj_over_a": 22, "rmaj_sa": 30, "rmin": 5, "rmin_loc": 30, "rmin_over_a": 22, "rmin_over_a_2": 22, "rmin_sa": 30, "rotat": [6, 17, 23, 24, 26], "rotation_model": [5, 22], "run": [3, 8, 17], "s_delta": [5, 22], "s_delta_loc": 30, "s_kappa": [5, 22], "s_kappa_loc": 30, "s_zeta": [5, 22], "s_zeta_loc": 30, "s_zmag": 22, "sat_geo_spectrum": 31, "sat_rul": 30, "satur": 29, "scalar_saturation_paramet": 31, "scenario": 37, "scienc": 13, "shape": 6, "shape_cos0": [5, 22], "shape_cos1": [5, 22], "shape_cos2": [5, 22], "shape_cos3": [5, 22], "shape_s_cos0": [5, 22], "shape_s_cos1": [5, 22], "shape_s_cos2": [5, 22], "shape_s_cos3": [5, 22], "shape_s_sin3": [5, 22], "shape_sin3": [5, 22], "shat_sa": 30, "shear": 22, "shift": [5, 22], "shortfal": 28, "sign_bt": 30, "sign_it": 30, "silent_flag": [5, 22], "sim_model": 22, "simul": [13, 16], "softwar": 17, "solut": [33, 38], "solv": 34, "solver": 38, "some": 38, "sonic": 26, "sonoma": 2, "sourc": [0, 3, 9, 34, 37], "space": 13, "speci": [6, 23, 24, 32, 40], "spectral": 6, "spectral_shift": 31, "spitzer_model": 22, "standard": 24, "start": 8, "step": [0, 6], "strategi": 38, "structur": 18, "studi": 16, "submiss": 8, "subroutin": [23, 24], "suit": 17, "sum_flux_spectrum": 31, "supercomput": 16, "supra": 16, "surfac": 10, "sweep": 16, "synopsi": 13, "synthet": 16, "tabl": [10, 32], "tabular": [6, 15, 40], "taus_1": 30, "te_ad": 22, "temp_": [5, 22], "temp_para_": 22, "temp_perp_": 22, "temperatur": 16, "temperature_spectrum": 31, "tglf": [29, 30, 31, 32], "tgyro": [33, 34, 38, 39, 40], "tgyro_den_method": 39, "tgyro_iteration_method": 39, "tgyro_mod": 39, "tgyro_neo_method": 39, "tgyro_relax_iter": 39, "tgyro_therm_flag": 39, "tgyro_write_profiles_flag": 39, "theoret": 26, "theori": [24, 26], "theory_nclass": 24, "theta0_sa": 30, "theta_plot": 5, "theta_trap": 30, "threed_exb_dphi0dr": 22, "threed_exb_model": 22, "threed_model": 22, "time": [6, 7], "tokamak": 16, "tore": 16, "toru": 13, "transport": [13, 16, 24, 33, 34], "transport_exp": 24, "transport_flux": 24, "transport_gv": 24, "turbul": 16, "ubuntu": 1, "udsymmetry_flag": 5, "ul1": 13, "ul2": 13, "ul3": 13, "ul4": 13, "unit": [30, 38], "up_alpha": 5, "up_radi": 5, "up_theta": 5, "upwind_single_flag": 5, "urban": 13, "usag": 8, "use_bisect": 30, "use_bp": 30, "use_bpar": 30, "use_inboard_detrap": 30, "use_mhd_rul": 30, "use_transport_model": 30, "user": [9, 13], "valid": [16, 29], "variabl": 0, "vector": 32, "vel": 24, "vel_fouri": 24, "veloc": 13, "velocity_ord": 5, "verif": 16, "vexb": 30, "vexb_shear": 30, "vpar_1": 30, "vpar_model": 30, "vpar_shear_1": 30, "vpar_shear_model": 30, "wd_zero": 30, "width": [30, 32], "width_min": 30, "workshop": 41, "write_wavefunction_flag": 30, "xnu_factor": 30, "xnu_model": 30, "xnue": 30, "xwell_sa": 30, "yearli": 13, "your": [0, 32], "z_": [5, 22], "z_eff": 5, "z_eff_method": 5, "zeff": 30, "zeta": [5, 22], "zeta_loc": 30, "zf_test_mod": 5, "zmag": 5, "zmag_over_a": 22, "zmaj_loc": 30, "zs_1": 30}})
\ No newline at end of file
diff --git a/docs/setup.html b/docs/setup.html
index b29cc5e..9186fa5 100644
--- a/docs/setup.html
+++ b/docs/setup.html
@@ -4,10 +4,10 @@
   <meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Environment setup &mdash; GACODE</title>
+  <title>Prebuilt Environments &mdash; GACODE</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
       <link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=19f00094" />
-      <link rel="stylesheet" type="text/css" href="_static/contentui.css?v=4cf5b151" />
+      <link rel="stylesheet" type="text/css" href="_static/contentui.css" />
 
   
     <link rel="shortcut icon" href="_static/favicon.ico"/>
@@ -20,11 +20,11 @@
         <script src="_static/documentation_options.js?v=5929fcd5"></script>
         <script src="_static/doctools.js?v=9a2dae69"></script>
         <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
-        <script src="_static/contentui.js?v=9ee86694"></script>
+        <script src="_static/contentui.js"></script>
     <script src="_static/js/theme.js"></script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
-    <link rel="next" title="Build from sources" href="build.html" />
+    <link rel="next" title="Build on your laptop" href="build.html" />
     <link rel="prev" title="Download and user agreement" href="download.html" /> 
 </head>
 
@@ -51,13 +51,13 @@
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1 current"><a class="current reference internal" href="#">Environment setup</a><ul>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">Prebuilt Environments</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="#nersc-perlmutter-cpu">NERSC PERLMUTTER (CPU)</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#nersc-perlmutter-gpu">NERSC PERLMUTTER (GPU)</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#ga-omega">GA OMEGA</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
@@ -91,7 +91,7 @@
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
       <li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
-      <li class="breadcrumb-item active">Environment setup</li>
+      <li class="breadcrumb-item active">Prebuilt Environments</li>
       <li class="wy-breadcrumbs-aside">
             <a href="_sources/setup.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -101,8 +101,8 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
              
-  <section id="environment-setup">
-<h1>Environment setup<a class="headerlink" href="#environment-setup" title="Link to this heading"></a></h1>
+  <section id="prebuilt-environments">
+<h1>Prebuilt Environments<a class="headerlink" href="#prebuilt-environments" title="Link to this heading"></a></h1>
 <p>Below we give information about the environment setup required to run GACODE tools on maintained platforms.  Once this step is complete, proceed to instructions on running cases <a class="reference internal" href="cgyro/running_cases.html"><span class="doc">CGYRO</span></a>, <a class="reference internal" href="neo.html"><span class="doc">NEO</span></a>, <a class="reference internal" href="tgyro.html"><span class="doc">TGYRO</span></a>, and so on.</p>
 <section id="nersc-perlmutter-cpu">
 <h2>NERSC PERLMUTTER (CPU)<a class="headerlink" href="#nersc-perlmutter-cpu" title="Link to this heading"></a></h2>
@@ -161,7 +161,7 @@ <h2>GA OMEGA<a class="headerlink" href="#ga-omega" title="Link to this heading">
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="download.html" class="btn btn-neutral float-left" title="Download and user agreement" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
-        <a href="build.html" class="btn btn-neutral float-right" title="Build from sources" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+        <a href="build.html" class="btn btn-neutral float-right" title="Build on your laptop" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>
diff --git a/docs/shortfall.html b/docs/shortfall.html
index 517e646..fd5ada8 100644
--- a/docs/shortfall.html
+++ b/docs/shortfall.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/tglf.html b/docs/tglf.html
index 77dad5c..36d7961 100644
--- a/docs/tglf.html
+++ b/docs/tglf.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/tglf/tglf_list.html b/docs/tglf/tglf_list.html
index 4bb3e7a..0afaf30 100644
--- a/docs/tglf/tglf_list.html
+++ b/docs/tglf/tglf_list.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/tglf/tglf_output_list.html b/docs/tglf/tglf_output_list.html
index ee1f0c8..094ab88 100644
--- a/docs/tglf/tglf_output_list.html
+++ b/docs/tglf/tglf_output_list.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/tglf/tglf_table.html b/docs/tglf/tglf_table.html
index fd33d9b..b85a40a 100644
--- a/docs/tglf/tglf_table.html
+++ b/docs/tglf/tglf_table.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/tgyro.html b/docs/tgyro.html
index cbfed4e..5c95849 100644
--- a/docs/tgyro.html
+++ b/docs/tgyro.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/tgyro/equations.html b/docs/tgyro/equations.html
index d3fef85..abc578f 100644
--- a/docs/tgyro/equations.html
+++ b/docs/tgyro/equations.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/tgyro/output.html b/docs/tgyro/output.html
index a762ba2..f0563c5 100644
--- a/docs/tgyro/output.html
+++ b/docs/tgyro/output.html
@@ -51,8 +51,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/tgyro/plot.html b/docs/tgyro/plot.html
index d23aff9..3b9e2c2 100644
--- a/docs/tgyro/plot.html
+++ b/docs/tgyro/plot.html
@@ -51,8 +51,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/tgyro/scenarios.html b/docs/tgyro/scenarios.html
index 9146e52..cbac3fc 100644
--- a/docs/tgyro/scenarios.html
+++ b/docs/tgyro/scenarios.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/tgyro/solver.html b/docs/tgyro/solver.html
index 4fdfcef..bfa3e60 100644
--- a/docs/tgyro/solver.html
+++ b/docs/tgyro/solver.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/tgyro/tgyro_list.html b/docs/tgyro/tgyro_list.html
index 488e5f0..fdea72b 100644
--- a/docs/tgyro/tgyro_list.html
+++ b/docs/tgyro/tgyro_list.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/tgyro/tgyro_table.html b/docs/tgyro/tgyro_table.html
index 404c040..19d9fb1 100644
--- a/docs/tgyro/tgyro_table.html
+++ b/docs/tgyro/tgyro_table.html
@@ -52,8 +52,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/workshop.html b/docs/workshop.html
index edbe228..3a6e7f1 100644
--- a/docs/workshop.html
+++ b/docs/workshop.html
@@ -50,8 +50,8 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1"><a class="reference internal" href="zreferences.html">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
diff --git a/docs/zreferences.html b/docs/zreferences.html
index b5945d7..77a9e73 100644
--- a/docs/zreferences.html
+++ b/docs/zreferences.html
@@ -25,7 +25,7 @@
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="NEO" href="neo.html" />
-    <link rel="prev" title="Build from sources" href="build.html" /> 
+    <link rel="prev" title="Build on your laptop" href="build.html" /> 
 </head>
 
 <body class="wy-body-for-nav"> 
@@ -51,8 +51,8 @@
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="license.html">GACODE License</a></li>
 <li class="toctree-l1"><a class="reference internal" href="download.html">Download and user agreement</a></li>
-<li class="toctree-l1"><a class="reference internal" href="setup.html">Environment setup</a></li>
-<li class="toctree-l1"><a class="reference internal" href="build.html">Build from sources</a></li>
+<li class="toctree-l1"><a class="reference internal" href="setup.html">Prebuilt Environments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="build.html">Build on your laptop</a></li>
 <li class="toctree-l1 current"><a class="current reference internal" href="#">References</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Codes</span></p>
@@ -513,7 +513,7 @@ <h1>References<a class="headerlink" href="#references" title="Link to this headi
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="build.html" class="btn btn-neutral float-left" title="Build from sources" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="build.html" class="btn btn-neutral float-left" title="Build on your laptop" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="neo.html" class="btn btn-neutral float-right" title="NEO" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
diff --git a/html/src/build.rst b/html/src/build.rst
index 5fedf6b..f89639d 100644
--- a/html/src/build.rst
+++ b/html/src/build.rst
@@ -1,10 +1,15 @@
-Build from sources
-==================
+Build on your laptop
+====================
 
-Prerequisites
--------------
+First step
+----------
 
-You will need suitable python and fortran environments. There is detailed help for :doc:`OSX users <build/pre_osx>` and :doc:`Linux users <build/pre_linux>`.
+You will need suitable python and fortran environments. There is detailed help for
+
+* :doc:`OSX users <build/pre_osx>` (MAC M2)
+* :doc:`Linux users <build/pre_linux>` (MINT, UBUNTU)
+
+If you need more help, please raise an issue at https://github.com/gafusion/gacode/issues
 
 Source code
 -----------
diff --git a/html/src/index.rst b/html/src/index.rst
index 951506b..6889808 100644
--- a/html/src/index.rst
+++ b/html/src/index.rst
@@ -42,6 +42,7 @@ GACODE software works with the :ref:`input.gacode` format.
    zreferences
 
 .. toctree::
+   :maxdepth: 4
    :caption: Codes
 
    neo
diff --git a/html/src/setup.rst b/html/src/setup.rst
index 469b84d..2c6038a 100644
--- a/html/src/setup.rst
+++ b/html/src/setup.rst
@@ -1,5 +1,5 @@
-Environment setup
-=================
+Prebuilt Environments
+=====================
 
 Below we give information about the environment setup required to run GACODE tools on maintained platforms.  Once this step is complete, proceed to instructions on running cases :doc:`CGYRO <cgyro/running_cases>`, :doc:`NEO <neo>`, :doc:`TGYRO <tgyro>`, and so on.
 
