Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Data processing: TCGA-CHOL cohort #2

Open
1 of 5 tasks
famosab opened this issue May 13, 2024 · 0 comments
Open
1 of 5 tasks

Data processing: TCGA-CHOL cohort #2

famosab opened this issue May 13, 2024 · 0 comments
Assignees
Labels
data processing if data needs to be processed with a pipeline

Comments

@famosab
Copy link
Collaborator

famosab commented May 13, 2024

@famosab has access to TCGA data


  • process WXS with nf-core/sarek with new alignment @famosab
  • process WXS with nf-core/sarek without new alignment @famosab
  • process WXS with OTP with new alignment
  • process WXS with OTP without new alignment
@famosab famosab added the data processing if data needs to be processed with a pipeline label May 13, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
data processing if data needs to be processed with a pipeline
Projects
None yet
Development

No branches or pull requests

2 participants