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Personode.m
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Personode.m
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%___________PERSONODE____________%
% Written by Gustavo Pamplona, Bruno Hebling Vieira
% Version 0.2b, October 2019
% Requirements: MATLAB 2013a, SPM12 (https://www.fil.ion.ucl.ac.uk/spm/software/spm12/)
%
% Contact: [email protected]
function Personode
clear all;close all; clc;
if exist('spm12') ~= 7 %this checks if spm12 is reachable
error('SPM12 is required to run Personode. Please obtain SPM12 at: https://www.fil.ion.ucl.ac.uk/spm/software/spm12/');
end
if exist('marsbar') ~= 2 %this checks if MarsBaR is reachable
error('MarsBaR is required to run Personode. You can install `marsbar-0.44` that is included within the Personode root dir. Alternatively, obtain MarsBaR at: http://marsbar.sourceforge.net/. If MarsBaR is in your `spm12/toolbox`, please add it to your PATH.');
end
%% Frames
% Main frame
P = struct(...
'Source2', 0,...
'Source4', 1,...
'Source5', 0,...
'BtnAll', 0,...
'BtnICAfile', 0,...
'BtnICAgroup', 0,...
'BtnTemp', 0,...
'BtnTXTAll', 0,...
'BtnTXT', 0,...
'Separated', 1,...
'Network', 0,...
'NrSubj', 0,...
'thrValue', 1,...
'lastComp', 1,...
'compSelected', 1,...
'lastCompValue', 0,...
'lastSlice', 45,...
'sliceSelected', 1,...
'lastSliceValue', 0,...
'compFirst', 1,...
'ICAgroup', [],...
'ICAfile', [],...
'files', [],...
'creationMode', 'i',...
'subjValue', 1,...
'loadImagesDone', 0,...
'CoregYes', 0,...
'radius', 4,...
'output', 0,...
'sphere', 1 ...
);
[P.workPath, ~, ~]= fileparts(mfilename('fullpath'));
handles_gui.hF = figure;
leftMF = 300;
bottomMF = 0;
widthMF = 860;
heightMF = 680;
textHeight = 20;
textShift = 4;
set(handles_gui.hF, ...
'position', [leftMF bottomMF widthMF heightMF], ...
'numbertitle', 'off', ...
'name', 'Personode', ...
'resize', 'off', ...
'tag', 'hF', ...
'menubar', 'none');
%% Frame 1: Source files main options
leftF1 = 20;
bottomF1 = 470;
heightF1 = 200;
widthF1 = 340;
uicontrol('style', 'frame', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF1 bottomF1 widthF1 heightF1]);
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF1+10 bottomF1+heightF1-25 widthF1-20 20], ...
'FontSize', 10,...
'FontWeight', 'bold',...
'string', 'Source Files Main Options');
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'HorizontalAlignment', 'left', ...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF1+25 bottomF1+heightF1-54 widthF1-50 20], ...
'string', '# of Subjects:');
uicontrol('style', 'edit', ...
'Parent',handles_gui.hF,...
'position', [leftF1+110 bottomF1+heightF1-50 40 20], ...
'callback', {@subjectsField_press},...
'BackgroundColor', 'white',...
'Selected', 'on',...
'Enable', 'on',...
'tag', 'edNrSubj');
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF1+25 bottomF1+heightF1-75 widthF1-50 20], ...
'string', 'Input files mode:');
uicontrol('Style','Radio',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Automatic (specify only first file in a series)',...
'Value', 1,...
'pos',[leftF1+25 bottomF1+heightF1-90 widthF1-26 20],...
'callback', {@btnSource4_press},...
'Enable', 'on',...
'tag', 'btnSource4');
uicontrol('Style','Radio',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Manual',...
'Value', 0,...
'pos',[leftF1+25 bottomF1+heightF1-110 widthF1-130 20],...
'callback', {@btnSource5_press},...
'Enable', 'on',...
'tag', 'btnSource5');
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF1+25 bottomF1+heightF1-130 widthF1-50 20], ...
'string', 'ROIs definition:');
uicontrol('Style','Radio',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Spheres',...
'Value', 1,...
'pos',[leftF1+25 bottomF1+heightF1-145 80 20],...
'callback', {@btnSource6_press},...
'Enable', 'on',...
'tag', 'btnSource6');
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'HorizontalAlignment', 'left', ...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF1+100 bottomF1+heightF1-149 50 20], ...
'string', 'Radius:');
uicontrol('style', 'edit', ...
'Parent',handles_gui.hF,...
'position', [leftF1+150 bottomF1+heightF1-145 25 20], ...
'callback', {@radius_press},...
'BackgroundColor', 'white',...
'Selected', 'on',...
'Enable', 'on',...
'String', 4,...
'tag', 'edRadius');
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'HorizontalAlignment', 'left', ...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF1+175 bottomF1+heightF1-149 40 20], ...
'string', 'mm');
uicontrol('Style','Radio',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Irregular',...
'Value', 0,...
'pos',[leftF1+240 bottomF1+heightF1-145 90 20],...
'callback', {@btnSource7_press},...
'Enable', 'on',...
'tag', 'btnSource7');
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'HorizontalAlignment', 'left', ...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF1+25 bottomF1+heightF1-184 90 20], ...
'string', 'Output Folder:');
uicontrol('style', 'edit', ...
'Parent',handles_gui.hF,...
'HorizontalAlignment', 'left', ...
'position', [(leftF1+110) bottomF1+heightF1-180 180 textHeight], ...
'BackgroundColor', 'white',...
'tag', 'edOutput',...
'Enable', 'on',...
'Selected','on',...
'string', [P.workPath filesep 'Output_files' filesep ]);
uicontrol('style', 'pushbutton', ...
'Parent',handles_gui.hF,...
'position', [(leftF1+300) bottomF1+heightF1-180 30 textHeight], ...
'tag', 'edOutputBtn',...
'Enable', 'on',...
'Selected','off',...
'string', '...', ...
'callback', {@OutputBtn_press});
%% Frame 2: Paths definition
leftF2 = 370;
bottomF2 = 550;
heightF2 = 120;
widthF2 = 480;
uicontrol('style', 'frame', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF2 bottomF2 widthF2 heightF2]);
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF2+5 (bottomF2+heightF2-25) 420 20], ...
'FontSize', 10,...
'FontWeight', 'bold',...
'string', 'Defining Paths');
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'HorizontalAlignment', 'center', ...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [(leftF2+5) (bottomF2+heightF2-70-textShift) 120 textHeight], ...
'string', 'ICA Group File:');
uicontrol('style', 'edit', ...
'Parent',handles_gui.hF,...
'HorizontalAlignment', 'left', ...
'position', [(leftF2+125) bottomF2+heightF2-70 305 textHeight], ...
'BackgroundColor', 'white',...
'tag', 'edICAGroup',...
'Enable', 'on',...
'Selected','on',...
'string', '...');
uicontrol('style', 'pushbutton', ...
'Parent',handles_gui.hF,...
'position', [(leftF2+440) bottomF2+heightF2-70 30 textHeight], ...
'tag', 'edICAGroupBtn',...
'Enable', 'on',...
'Selected','off',...
'string', '...', ...
'callback', {@ICAGroupChoose_press});
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'HorizontalAlignment', 'left', ...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [(leftF2+5) (bottomF2+heightF2-100-textShift) 120 textHeight], ...
'string', 'Individual ICA Files:');
uicontrol('style', 'edit', ...
'Parent',handles_gui.hF,...
'HorizontalAlignment', 'left', ...
'position', [(leftF2+125) bottomF2+heightF2-100 305 textHeight], ...
'BackgroundColor', 'white',...
'tag', 'edICAComp',...
'Enable', 'off',...
'Selected','on',...
'callback', {@ICACompChoose_text},...
'string', '...');
uicontrol('style', 'pushbutton', ...
'Parent',handles_gui.hF,...
'position', [(leftF2+440) bottomF2+heightF2-100 30 textHeight], ...
'tag', 'edICACompBtn',...
'Enable', 'off',...
'Selected','off',...
'string', '...', ...
'callback', {@ICACompChoose_press});
%% Frame 3: "Templates Definition"
leftF3 = 20;
bottomF3 = 150;
widthF3 = 340;
heightF3 = 300;
uicontrol('style', 'frame', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF3 bottomF3 widthF3 heightF3]);
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF3+15 (bottomF3+heightF3-25) widthF3-20 20], ...
'FontSize', 10,...
'FontWeight', 'bold',...
'string', 'Templates Definition');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','All',...
'Value', 0,...
'pos',[leftF3+15 bottomF3+heightF3-50 100 20],...
'callback', {@btnAllTemp_press},...
'tag', 'btnAll');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Dorsal Attention',...
'Value', 0,...
'pos',[leftF3+5 bottomF3+heightF3-80 190 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp01');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Auditory',...
'Value', 0,...
'pos',[leftF3+5 bottomF3+heightF3-100 190 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp02');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Basal Ganglia',...
'Value', 0,...
'pos',[leftF3+5 bottomF3+heightF3-120 190 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp03');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Cerebellum',...
'Value', 0,...
'pos',[leftF3+5 bottomF3+heightF3-140 190 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp04');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Cognition/Emotion',...
'Value', 0,...
'pos',[leftF3+5 bottomF3+heightF3-160 190 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp05');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Default Mode, Dorsal/Posterior',...
'Value', 0,...
'pos',[leftF3+5 bottomF3+heightF3-180 190 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp06');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Default Mode, Medial',...
'Value', 0,...
'pos',[leftF3+5 bottomF3+heightF3-200 190 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp07');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Executive Control',...
'Value', 0,...
'pos',[leftF3+5 bottomF3+heightF3-220 190 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp08');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Frontoparietal, Left',...
'Value', 0,...
'pos',[leftF3+5 bottomF3+heightF3-240 190 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp09');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Frontoparietal, Right',...
'Value', 0,...
'pos',[leftF3+5 bottomF3+heightF3-260 190 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp10');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Ventral Stream, Left',...
'Value', 0,...
'pos',[leftF3+195 bottomF3+heightF3-80 140 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp11');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Ventral Stream, Right',...
'Value', 0,...
'pos',[leftF3+195 bottomF3+heightF3-100 140 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp12');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Postcentral',...
'Value', 0,...
'pos',[leftF3+195 bottomF3+heightF3-120 140 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp13');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Precentral',...
'Value', 0,...
'pos',[leftF3+195 bottomF3+heightF3-140 140 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp14');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Precuneus',...
'Value', 0,...
'pos',[leftF3+195 bottomF3+heightF3-160 140 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp15');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Salience',...
'Value', 0,...
'pos',[leftF3+195 bottomF3+heightF3-180 140 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp16');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Sensorimotor',...
'Value', 0,...
'pos',[leftF3+195 bottomF3+heightF3-200 140 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp17');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Visual, Primary I',...
'Value', 0,...
'pos',[leftF3+195 bottomF3+heightF3-220 140 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp18');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Visual, Primary II',...
'Value', 0,...
'pos',[leftF3+195 bottomF3+heightF3-240 140 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp19');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Visual, Medial',...
'Value', 0,...
'pos',[leftF3+195 bottomF3+heightF3-260 140 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp20');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Visual, Higher Level',...
'Value', 0,...
'pos',[leftF3+195 bottomF3+heightF3-280 140 20],...
'callback', {@btnTemp_press},...
'tag', 'btnTemp21');
%% Frame 4: "Coregistration"
leftF4 = 20;
bottomF4 = 40;
widthF4 = 340;
heightF4 = 90;
uicontrol('style', 'frame', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF4 bottomF4 widthF4 heightF4]);
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF4+15 (bottomF4+heightF4-25) widthF4-20 20], ...
'FontSize', 9,...
'FontWeight', 'bold',...
'string', 'Are ICA maps provided in MNI space?');
uicontrol('Style','Radio',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Yes',...
'Enable', 'off',...
'Value', 0,...
'pos',[leftF4+15 bottomF4+heightF4-45 widthF4-20 20],...
'callback', {@btnYesCoreg_press},...
'tag', 'btnYesCoreg');
uicontrol('Style','Radio',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','No (this will prompt SPM to normalize the maps)',...
'Enable', 'off',...
'Value', 0,...
'pos',[leftF4+15 bottomF4+heightF4-65 widthF4-20 20],...
'callback', {@btnNoCoreg_press},...
'tag', 'btnNoCoreg');
%% Frame 5: "Describing ROIs features"
leftF5 = 370;
bottomF5 = 40;
widthF5 = 260;
heightF5 = 170;
uicontrol('style', 'frame', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF5 bottomF5 widthF5 heightF5]);
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF5+15 (bottomF5+heightF5-25) widthF5-20 20], ...
'FontSize', 9,...
'FontWeight', 'bold',...
'string', 'Describing ROIs features?');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','All',...
'Value', 0,...
'pos',[leftF5+15 bottomF5+heightF5-50 widthF5-20 20],...
'callback', {@btnTXTAll_press},...
'tag', 'btnTXTAll');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Peak Value',...
'Value', 0,...
'pos',[leftF5+15 bottomF5+heightF5-80 widthF5-20 20],...
'callback', {@btnTXT_press},...
'tag', 'btnTXT01');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','"Real World" Coordinates',...
'Value', 0,...
'pos',[leftF5+15 bottomF5+heightF5-100 widthF5-20 20],...
'callback', {@btnTXT_press},...
'tag', 'btnTXT02');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','MNI Coordinates',...
'Value', 0,...
'pos',[leftF5+15 bottomF5+heightF5-120 widthF5-20 20],...
'callback', {@btnTXT_press},...
'tag', 'btnTXT03');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Network name',...
'Value', 0,...
'pos',[leftF5+15 bottomF5+heightF5-140 widthF5-20 20],...
'callback', {@btnTXT_press},...
'tag', 'btnTXT04');
uicontrol('Style','checkbox',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Component Number',...
'Value', 0,...
'pos',[leftF5+15 bottomF5+heightF5-160 widthF5-20 20],...
'callback', {@btnTXT_press},...
'tag', 'btnTXT05');
%% Start button
uicontrol('style', 'pushbutton', ...
'Parent',handles_gui.hF,...
'position', [700 35 100 35], ...
'FontWeight', 'bold',...
'FontSize', 11,...
'tag', 'btnStart',...
'callback', {@start_press},...
'Enable', 'off',...
'string', 'Start');
%% Show MNI Template
VallMNI=spm_vol(deblank([P.workPath filesep 'Images_example' filesep 'avg152T1.nii']));
P.temp=spm_read_vols(VallMNI);
P.MNI=uint8(P.temp(:,:,45)*256);
handles_gui.P0 = uipanel;
leftP0 = 0.430;
bottomP0 = 0.317;
widthP0 = 0.380;
heightP0 = 0.454;
set(handles_gui.P0,...
'title','Image',...
'FontSize',10,...
'FontName','Arial',...
'FontWeight','Bold',...
'Visible', 'on',...
'tag', 'P0',...
'ButtonDownFcn', {@dispIMG_press},...
'Clipping', 'on',...
'BackgroundColor', [0.85 0.85 0.85],...
'Position', [leftP0 bottomP0 widthP0 heightP0]);
handles.A0 = axes;
set(handles.A0,'Parent',handles_gui.P0,...
'ActivePositionProperty', 'Position',...
'Position', [0.05 -0.05 1 1],...
'NextPlot', 'replacechildren'); % replacechildren
imshow(rot90(P.MNI), 'Parent', handles.A0);
%% Figure features
leftF6 = 720;
bottomF6 = 222;
widthF6 = 150;
heightF6 = 20;
uicontrol('style', 'frame', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF6-15 bottomF6+25 widthF6-5 270]);
% Select Slice
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'HorizontalAlignment', 'center', ...
'FontWeight', 'bold',...
'position', [leftF6-10 bottomF6+265 40 20], ...
'string', 'Slice');
uicontrol('style', 'edit', ...
'Parent',handles_gui.hF,...
'position', [leftF6-10 bottomF6+245 40 20], ...
'callback', {@sliceSelect_press},...
'BackgroundColor', 'white',...
'Selected', 'on',...
'Enable', 'off',...
'String', '45',...
'tag', 'sliceSelect');
uicontrol('style', 'slider', ...
'Parent',handles_gui.hF,...
'position', [leftF6 bottomF6+40 20 200], ...
'callback', {@sliceBtnSlider_press},...
'Selected', 'off',...
'Enable', 'off',...
'Max', 91,...
'Min', 1, ...
'Value', 45, ...
'SliderStep', [1/90,1/9],...
'tag', 'sliceBtnSlider');
% Select Threshold
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'HorizontalAlignment', 'center', ...
'FontWeight', 'bold',...
'position', [leftF6+50 bottomF6+180 70 20], ...
'string', 'Threshold');
uicontrol('style', 'edit', ...
'Parent',handles_gui.hF,...
'position', [leftF6+75 bottomF6+160 30 20], ...
'callback', {@thrSelect_press},...
'BackgroundColor', 'white',...
'Selected', 'on',...
'Enable', 'off',...
'String', '1',...
'tag', 'thrSelect');
% Select Subject
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'HorizontalAlignment', 'center', ...
'FontWeight', 'bold',...
'position', [leftF6+50 bottomF6+120 70 20], ...
'string', 'Subject');
uicontrol('style', 'pop', ...
'Parent',handles_gui.hF,...
'position', [leftF6+50 bottomF6+100 70 20], ...
'callback', {@subjSelect_press},...
'BackgroundColor', 'white',...
'Selected', 'on',...
'Enable', 'off',...
'string', 'Subject',...
'tag', 'subjSelect');
% Select Component
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'HorizontalAlignment', 'center', ...
'FontWeight', 'bold',...
'position', [leftF6+50 bottomF6+60 70 20], ...
'string', 'Component');
uicontrol('style', 'edit', ...
'Parent',handles_gui.hF,...
'position', [leftF6+70 bottomF6+40 30 20], ...
'callback', {@compSelect_press},...
'BackgroundColor', 'white',...
'Selected', 'on',...
'Enable', 'off',...
'String', '1',...
'tag', 'compSelect');
uicontrol('style', 'slider', ...
'Parent',handles_gui.hF,...
'position', [leftF6+100 bottomF6+40 15 20], ...
'callback', {@compbtnSlider_press},...
'Selected', 'off',...
'Enable', 'off',...
'tag', 'compBtnSlider');
% Refresh button
uicontrol('style', 'pushbutton', ...
'Parent',handles_gui.hF,...
'position', [leftF6+10 bottomF6 widthF6-50 heightF6], ...
'FontWeight', 'bold',...
'tag', 'btnRefresh',...
'callback', {@refresh_press},...
'Enable', 'off',...
'string', 'Refresh Image');
%% Frame 6: "How will the nodes be created?"
leftF6 = 640;
bottomF6 = 80;
widthF6 = 210;
heightF6 = 130;
uicontrol('style', 'frame', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF6 bottomF6 widthF6 heightF6]);
uicontrol('style', 'text', ...
'Parent',handles_gui.hF,...
'BackgroundColor', [0.85 0.85 0.85],...
'position', [leftF6+15 (bottomF6+heightF6-25) widthF6-20 20], ...
'FontSize', 9,...
'FontWeight', 'bold',...
'string', 'How will the nodes be created?');
uicontrol('Style','Radio',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','Separated',...
'Value', 1,...
'pos',[leftF6+15 bottomF6+heightF6-60 widthF6-20 20],...
'callback', {@btnSeparated_press},...
'tag', 'btnSeparated');
uicontrol('Style','Radio',...
'Parent',handles_gui.hF,...
'FontWeight', 'bold',...
'BackgroundColor', [0.85 0.85 0.85],...
'String','As a network',...
'Value', 0,...
'pos',[leftF6+15 bottomF6+heightF6-80 widthF6-20 20],...
'callback', {@btnNetwork_press},...
'tag', 'btnNetwork');
guidata(handles_gui.hF, P);
set(handles_gui.hF, 'HandleVisibility', 'callback');
return
function sliceSelect_press(src, ~)
handles = guihandles(src);
P = guidata(src);
slice = str2double(get(handles.sliceSelect, 'string'));
if slice<1
slice=1;
elseif slice>size(P.MNI,1)
slice=size(P.MNI,1);
end
set(handles.sliceSelect, 'string', num2str(slice));
set(handles.sliceBtnSlider, 'Value', slice);
P.lastSlice=slice;
P.sliceSelected=1;
set(src,'Value',slice/100);
guidata(handles.hF, P);
refresh_press(src)
return
function sliceBtnSlider_press(src, ~)
handles = guihandles(src);
P = guidata(src);
slice = round(get(src,'Value'));
if P.sliceSelected==1
if get(src,'Value')<P.lastSlice
slice=P.lastSlice-1;
else
slice=P.lastSlice+1;
end
end
if slice<1
slice=slice+1;
elseif slice>size(P.MNI,1)
slice=slice-1;
else
set(handles.sliceSelect, 'string', num2str(slice));
end
set(src,'Value', slice);
P.lastSlice=slice;
P.sliceSelected=0;
guidata(handles.hF,P);
refresh_press(src)
return
function thrSelect_press(src, ~)
handles = guihandles(src);
P = guidata(src);
P.thrValue=str2num(get(handles.thrSelect, 'String'));
guidata(handles.hF, P);
refresh_press(src)
return
function subjSelect_press(src, ~)
handles = guihandles(src);
P = guidata(src);
P.subjValue=get(handles.subjSelect, 'value');
guidata(handles.hF, P);
refresh_press(src)
return
function compSelect_press(src, ~)
handles = guihandles(src);
P = guidata(src);
comp = str2double(get(handles.compSelect, 'string'));
if comp<1
comp=1;
elseif comp>size(P.ICAfile,1)
comp=size(P.ICAfile,1);
end
set(handles.compSelect, 'string', num2str(comp));
P.lastComp=comp;
P.compSelected=1;
set(src,'Value',comp/100);
guidata(handles.hF, P);
refresh_press(src)
return
function compbtnSlider_press(src, ~)
handles = guihandles(src);
P = guidata(src);
if P.compFirst==1
set(handles.compBtnSlider, 'Value', 1);
set(handles.compBtnSlider, 'Min', 1);
set(handles.compBtnSlider, 'Max', size(P.image,4));
set(handles.compBtnSlider, 'SliderStep', [1/(size(P.image,4)-1) 10*(1/(size(P.image,4)-1))]);
end
comp = round(get(src,'Value'));
if P.compSelected==1
if get(src,'Value')<P.lastCompValue
comp=P.lastComp-1;
else
comp=P.lastComp+1;
end
end
if comp<1
comp=comp+1;
elseif comp>size(P.image,4)
comp=comp-1;
else
set(handles.compSelect, 'string', num2str(comp));
end
set(src,'Value', comp);
P.lastComp=comp;
P.compFirst=0;
P.lastCompValue=get(src,'Value');
P.compSelected=0;
guidata(handles.hF,P);
refresh_press(src)
return
function refresh_press(src, evt)
handles = guihandles(src);
P = guidata(src);
P.NrCompImage = str2double(get(handles.compSelect, 'string'));
handles.A0 = axes;
set(handles.A0,'Parent',handles.P0,...
'ActivePositionProperty', 'Position',...
'Position', [0.05 -0.05 1 1],...
'NextPlot', 'replacechildren');
C1=P.temp(:,:,P.lastSlice);
if P.subjValue<2
Vall=spm_vol(deblank(P.ICAgroup));
P.image=spm_read_vols(Vall);
C2=(P.image(:,:,P.lastSlice,P.NrCompImage))>P.thrValue;
P.prevIndex=0;
else
index=P.subjValue-1;
if index~=P.prevIndex