diff --git a/.latest-version b/.latest-version index 33fa47a..0c8d17c 100644 --- a/.latest-version +++ b/.latest-version @@ -1 +1 @@ -20230823213033 +20230901134437 diff --git a/build.gradle b/build.gradle index 5804742..f2607ad 100644 --- a/build.gradle +++ b/build.gradle @@ -6,7 +6,7 @@ plugins { } group = 'edu.stanford.hivdb' -version = '3.4.5' +version = '3.4.6' sourceCompatibility = 15 targetCompatibility = 15 diff --git a/sierra-core b/sierra-core index 3076de8..309d2a0 160000 --- a/sierra-core +++ b/sierra-core @@ -1 +1 @@ -Subproject commit 3076de8c8c2e2f0297badb0ab392047eb776e6b5 +Subproject commit 309d2a0edaa0779bcce8f64ba7d0679a43361305 diff --git a/sierra-tests/build.gradle b/sierra-tests/build.gradle index 200eec4..e7ddf29 100644 --- a/sierra-tests/build.gradle +++ b/sierra-tests/build.gradle @@ -5,7 +5,7 @@ plugins { } group = 'edu.stanford.hivdb' -version = '3.4.5' +version = '3.4.6' description = """Sierra Unit Tests""" diff --git a/sierra-tests/src/test/java/edu/stanford/hivdb/mutations/MutationSetTest.java b/sierra-tests/src/test/java/edu/stanford/hivdb/mutations/MutationSetTest.java index 18ed33c..bf66a8e 100644 --- a/sierra-tests/src/test/java/edu/stanford/hivdb/mutations/MutationSetTest.java +++ b/sierra-tests/src/test/java/edu/stanford/hivdb/mutations/MutationSetTest.java @@ -397,9 +397,14 @@ public void testGetAmbiguousCodons() { List> mutations = new ArrayList<>(); mutations.add(hiv.parseMutationString("RT215V")); mutations.add(hiv.parseMutationString("RT67N")); + // AHT is the codon for triggering isAmbiguous() returning true + mutations.add(hiv.parseMutationString("RT123INT:AHT")); MutationSet mSet = new MutationSet(mutations); - assertNotNull(mSet.getAmbiguousCodons()); + assertEquals( + new MutationSet<>(hiv.parseMutationString("RT123INT")), + mSet.getAmbiguousCodons() + ); } @Test diff --git a/src/main/resources/version.properties b/src/main/resources/version.properties index 7459883..9214beb 100644 --- a/src/main/resources/version.properties +++ b/src/main/resources/version.properties @@ -1,2 +1,2 @@ -version = 3.4.5 -versionDate = 2023-08-22 +version = 3.4.6 +versionDate = 2023-09-01