diff --git a/modules/bindgen/src/main/scala/Config.scala b/modules/bindgen/src/main/scala/Config.scala
index 61249890..c1548d41 100644
--- a/modules/bindgen/src/main/scala/Config.scala
+++ b/modules/bindgen/src/main/scala/Config.scala
@@ -25,7 +25,8 @@ case class Config(
     printFiles: PrintFiles,
     exportMode: ExportMode,
     outputChannel: OutputChannel,
-    tempDir: TempPath
+    tempDir: TempPath,
+    excludeSystemPaths: List[SystemPath]
 )
 
 case class Context(
@@ -35,19 +36,11 @@ case class Context(
 )
 
 object Config:
-  def withDefaults(
-      // headerFile: HeaderFile,
-      // packageName: PackageName,
-      // lang: Lang,
-      // outputChannel: OutputChannel
-  ) =
+  def withDefaults() =
     Config(
-      // packageName = packageName,
-      // headerFile = headerFile,
       linkName = None,
       indentSize = defaults.indentSize,
       indents = defaults.indents,
-      // lang = lang,
       cImports = Nil,
       clangFlags = Nil,
       quiet = Quiet.No,
@@ -59,7 +52,8 @@ object Config:
       printFiles = PrintFiles.No,
       exportMode = ExportMode.No,
       outputChannel = OutputChannel.cli,
-      tempDir = TempPath(sys.props("java.io.tmpdir"))
+      tempDir = TempPath(sys.props("java.io.tmpdir")),
+      excludeSystemPaths = Nil
     )
   object defaults:
     val indentSize = IndentationSize(3)
@@ -107,6 +101,9 @@ object CImport extends OpaqueString[CImport]
 opaque type ClangFlag = String
 object ClangFlag extends OpaqueString[ClangFlag]
 
+opaque type SystemPath = String
+object SystemPath extends OpaqueString[SystemPath]
+
 opaque type HeaderFile = String
 object HeaderFile extends OpaqueString[HeaderFile]
 
diff --git a/modules/bindgen/src/main/scala/analysis/InteractiveDriver.scala b/modules/bindgen/src/main/scala/analysis/InteractiveDriver.scala
index 9413ddb6..fec42e88 100644
--- a/modules/bindgen/src/main/scala/analysis/InteractiveDriver.scala
+++ b/modules/bindgen/src/main/scala/analysis/InteractiveDriver.scala
@@ -34,7 +34,10 @@ object InteractiveDriver:
       Right(
         InteractiveDriver(
           config,
-          ConfiguredEnvironment(clang, SystemHeaderDetector(clang))
+          ConfiguredEnvironment(
+            clang,
+            SystemHeaderDetector(clang, config.excludeSystemPaths)
+          )
         )
       )
 end InteractiveDriver
diff --git a/modules/bindgen/src/main/scala/analysis/SystemHeaderDetector.scala b/modules/bindgen/src/main/scala/analysis/SystemHeaderDetector.scala
index 50823177..11b026cc 100644
--- a/modules/bindgen/src/main/scala/analysis/SystemHeaderDetector.scala
+++ b/modules/bindgen/src/main/scala/analysis/SystemHeaderDetector.scala
@@ -13,16 +13,28 @@ import scala.scalanative.unsigned.*
 import scalanative.libc.*
 import scala.scalanative.runtime.libc
 import libclang.fluent.string
+import java.nio.file.Path
+import java.nio.file.Paths
 
-class SystemHeaderDetector(clangInfo: ClangInfo):
+class SystemHeaderDetector(
+    clangInfo: ClangInfo,
+    excludeSystemPaths: List[SystemPath]
+):
   private val mut = collection.mutable.Map.empty[String, Boolean]
+  private val includes = clangInfo.includePaths.map(Paths.get(_))
+  private val excludes = excludeSystemPaths.map(_.value).map(Paths.get(_))
 
   def isSystem(filename: String): Boolean =
     val path = java.nio.file.Paths.get(filename)
+
+    def isChild(ip: Path) = path.startsWith(ip)
+
+    val isInExcludedLocation = excludes.exists(isChild)
+    val isInSystemLocation = includes.exists(isChild)
+
     mut.getOrElseUpdate(
       filename,
-      clangInfo.includePaths.exists { ip =>
-        path.startsWith(ip)
-      }
+      if isInExcludedLocation then false else isInSystemLocation
     )
+  end isSystem
 end SystemHeaderDetector
diff --git a/modules/bindgen/src/main/scala/cli/arguments.scala b/modules/bindgen/src/main/scala/cli/arguments.scala
index 67c6495a..519a830d 100644
--- a/modules/bindgen/src/main/scala/cli/arguments.scala
+++ b/modules/bindgen/src/main/scala/cli/arguments.scala
@@ -121,6 +121,16 @@ object CLI:
     .withDefault(Nil)
     .map(_.map(ClangFlag.apply(_)))
 
+  private val excludeSystemPaths = Opts
+    .options[String](
+      "exclude-system-path",
+      help =
+        "List of paths to mark as non-system (helpful if Clang reports some paths you'd rather not ignore)"
+    )
+    .map(_.toList)
+    .withDefault(Nil)
+    .map(_.map(SystemPath.apply(_)))
+
   private val clangInclude = Opts
     .options[String](
       "clang-include",
@@ -348,7 +358,8 @@ object CLI:
       printFiles,
       exportMode,
       Opts(OutputChannel.cli),
-      tempDir
+      tempDir,
+      excludeSystemPaths
     ).mapN(Config.apply)
 
   val command = Command(
diff --git a/modules/bindgen/src/main/scala/main.scala b/modules/bindgen/src/main/scala/main.scala
index e4b4c5c7..9dbf06e1 100644
--- a/modules/bindgen/src/main/scala/main.scala
+++ b/modules/bindgen/src/main/scala/main.scala
@@ -44,28 +44,34 @@ object Generate:
                   config.config.outputChannel.stdoutLine(lb.result)
 
                 case (RenderedOutput.Single(lb), OutputMode.SingleFile(f)) =>
-                  Using.resource(new FileWriter(f.value)) { fw =>
-                    fw.write(lb.result)
-                  }
-                  info(s"Generated ${f.value.toPath.toAbsolutePath()}")
+                  val result = lb.result.trim()
+                  if result.nonEmpty then
+                    Using.resource(new FileWriter(f.value)) { fw =>
+                      fw.write(result)
+                    }
+                    info(s"Generated ${f.value.toPath.toAbsolutePath()}")
 
-                  if config.config.printFiles == PrintFiles.Yes then
-                    config.config.outputChannel.stdoutLine(
-                      f.value.toPath.toAbsolutePath().toString()
-                    )
+                    if config.config.printFiles == PrintFiles.Yes then
+                      config.config.outputChannel.stdoutLine(
+                        f.value.toPath.toAbsolutePath().toString()
+                      )
+                  end if
 
                 case (RenderedOutput.Multi(mp), OutputMode.MultiFile(d)) =>
                   val path = d.value.toPath()
                   mp.foreach { (sn, lb) =>
-                    val file = path.resolve(sn.value + ".scala")
-                    Using.resource(new FileWriter(file.toFile)) { fw =>
-                      fw.write(lb.result)
-                    }
-                    info(s"Generated ${file.toAbsolutePath()}")
-                    if config.config.printFiles == PrintFiles.Yes then
-                      config.config.outputChannel.stdoutLine(
-                        file.toAbsolutePath()
-                      )
+                    val result = lb.result.trim()
+                    if result.nonEmpty then
+                      val file = path.resolve(sn.value + ".scala")
+                      Using.resource(new FileWriter(file.toFile)) { fw =>
+                        fw.write(result)
+                      }
+                      info(s"Generated ${file.toAbsolutePath()}")
+                      if config.config.printFiles == PrintFiles.Yes then
+                        config.config.outputChannel.stdoutLine(
+                          file.toAbsolutePath()
+                        )
+                    end if
 
                   }
               end match
diff --git a/modules/bindgen/src/main/scala/render/functionRewriter.scala b/modules/bindgen/src/main/scala/render/functionRewriter.scala
index 5728015d..1f2be060 100644
--- a/modules/bindgen/src/main/scala/render/functionRewriter.scala
+++ b/modules/bindgen/src/main/scala/render/functionRewriter.scala
@@ -104,7 +104,7 @@ enum GeneratedFunction:
 end GeneratedFunction
 
 private def externFuncName(s: String)(using c: Context) =
-  s"__sn_wrap_${c.packageName.value}_" + s
+  s"__sn_wrap_${c.packageName.value.replace(".", "_")}_" + s
 
 private def scalaForwarderFunction(
     bad: Def.Function
diff --git a/modules/bindgen/src/main/scala/render/scalaType.scala b/modules/bindgen/src/main/scala/render/scalaType.scala
index a5bc053f..9eb5a639 100644
--- a/modules/bindgen/src/main/scala/render/scalaType.scala
+++ b/modules/bindgen/src/main/scala/render/scalaType.scala
@@ -11,7 +11,7 @@ def renderName(name: Name.Model)(using config: Config) =
   (nameMatches orElse pathMatches)
     .map(_._2.value)
     .map { pkgName =>
-      s"_root_.$pkgName.all.${name.value}"
+      s"_root_.$pkgName.${name.value}"
     }
     .getOrElse(name.value)
 end renderName
diff --git a/modules/interface/src/main/scala/Interface.scala b/modules/interface/src/main/scala/Interface.scala
index 20176a48..32356be1 100644
--- a/modules/interface/src/main/scala/Interface.scala
+++ b/modules/interface/src/main/scala/Interface.scala
@@ -84,6 +84,7 @@ class Binding private (
     val externalPaths: Map[String, String] = Defaults.externalPaths,
     val externalNames: Map[String, String] = Defaults.externalNames,
     val bindgenArguments: List[String] = Defaults.bindgenArguments,
+    val excludeSystemPaths: List[Path] = Defaults.excludeSystemPaths,
     val scalaFile: String,
     val cFile: String
 ) { self =>
@@ -106,6 +107,7 @@ class Binding private (
       externalPaths: Map[String, String] = self.externalPaths,
       externalNames: Map[String, String] = self.externalNames,
       bindgenArguments: List[String] = self.bindgenArguments,
+      excludeSystemPaths: List[Path] = self.excludeSystemPaths,
       scalaFile: String = self.scalaFile,
       cFile: String = self.cFile
   ) =
@@ -127,6 +129,7 @@ class Binding private (
       externalPaths = externalPaths,
       externalNames = externalNames,
       bindgenArguments = bindgenArguments,
+      excludeSystemPaths = excludeSystemPaths,
       scalaFile = scalaFile,
       cFile = cFile
     )
@@ -185,6 +188,10 @@ class Binding private (
       arg("render.external-name", s"$filter=$pkg")
     }
 
+    excludeSystemPaths.map { case path =>
+      arg("exclude-system-path", path.toString())
+    }
+
     sb ++= bindgenArguments
 
     sb.result()
@@ -260,6 +267,12 @@ object Binding {
     def addExternalNames(externals: Map[String, String]) =
       copy(b => b.copy(externalNames = b.externalNames ++ externals))
 
+    def addExcludedSystemPath(path: Path) =
+      copy(b => b.copy(excludeSystemPaths = b.excludeSystemPaths :+ path))
+
+    def withExcludedSystemPaths(paths: List[Path]) =
+      copy(b => b.copy(excludeSystemPaths = paths))
+
     def withBindgenArguments(arguments: List[String]) =
       copy(_.copy(bindgenArguments = arguments))
     def addBindgenArgument(argument: String) =
@@ -285,6 +298,7 @@ object Binding {
     val externalPaths = Map.empty[String, String]
     val externalNames = Map.empty[String, String]
     val bindgenArguments = List.empty[String]
+    val excludeSystemPaths = List.empty[Path]
     val exportMode = false
   }
 
diff --git a/modules/sbt-plugin/src/sbt-test/basic/artifacts/test b/modules/sbt-plugin/src/sbt-test/basic/artifacts/test
index 8fc8d2e0..f4661bef 100644
--- a/modules/sbt-plugin/src/sbt-test/basic/artifacts/test
+++ b/modules/sbt-plugin/src/sbt-test/basic/artifacts/test
@@ -1,8 +1,8 @@
 > run
-$ exists target/scala-3.1.1/resource_managed/main/scala-native/libtest.c 
+-$ exists target/scala-3.1.1/resource_managed/main/scala-native/libtest.c 
 $ exists target/scala-3.1.1/src_managed/main/libtest.scala
 > test
-$ exists target/scala-3.1.1/resource_managed/test/scala-native/gentests.c
+-$ exists target/scala-3.1.1/resource_managed/test/scala-native/gentests.c
 $ exists target/scala-3.1.1/src_managed/test/gentests.scala
 
 
diff --git a/modules/sbt-plugin/src/sbt-test/basic/binding-mode/build.sbt b/modules/sbt-plugin/src/sbt-test/basic/binding-mode/build.sbt
index a001d0b5..0a7238b0 100644
--- a/modules/sbt-plugin/src/sbt-test/basic/binding-mode/build.sbt
+++ b/modules/sbt-plugin/src/sbt-test/basic/binding-mode/build.sbt
@@ -3,25 +3,32 @@ enablePlugins(BindgenPlugin, ScalaNativePlugin, ScalaNativeJUnitPlugin)
 import bindgen.interface.Binding
 import java.util.concurrent.atomic.AtomicReference
 
-scalaVersion := "3.2.0"
+scalaVersion := "3.3.1"
 
 bindgenBindings := {
   Seq(
-    Binding(
-      headerFile =
+    Binding
+      .builder(
         baseDirectory.value / "src" / "main" / "resources" / "scala-native" / "header.h",
-      packageName = "bindings"
-    )
+        "bindings"
+      )
+      .addCImport("header.h")
+      .build
   )
 }
 
 Test / bindgenBindings := {
   Seq(
-    Binding(
-      headerFile =
+    Binding
+      .builder(
         baseDirectory.value / "src" / "main" / "resources" / "scala-native" / "header.h",
-      packageName = "testbindings"
-    )
+        "testbindings"
+      )
+      .addCImport("header.h")
+      .addClangFlag(
+        "-I" + (baseDirectory.value / "src" / "main" / "resources" / "scala-native").toString
+      )
+      .build
   )
 }
 
@@ -40,3 +47,10 @@ Test / bindgenMode := {
 
   BindgenMode.Manual(scalaFolder, cFolder)
 }
+
+Test / nativeConfig := {
+  val config = (Test / nativeConfig).value
+  config.withCompileOptions(
+    config.compileOptions :+ ("-I" + (baseDirectory.value / "src" / "main" / "resources" / "scala-native").toString)
+  )
+}
diff --git a/modules/sbt-plugin/src/sbt-test/basic/binding-mode/project/plugins.sbt b/modules/sbt-plugin/src/sbt-test/basic/binding-mode/project/plugins.sbt
index 08d68fcf..a98839d8 100644
--- a/modules/sbt-plugin/src/sbt-test/basic/binding-mode/project/plugins.sbt
+++ b/modules/sbt-plugin/src/sbt-test/basic/binding-mode/project/plugins.sbt
@@ -1,4 +1,4 @@
 addSbtPlugin(
   "com.indoorvivants" % "bindgen-sbt-plugin" % sys.props("plugin.version")
 )
-addSbtPlugin("org.scala-native" % "sbt-scala-native" % "0.4.7")
+addSbtPlugin("org.scala-native" % "sbt-scala-native" % "0.4.16")
diff --git a/modules/sbt-plugin/src/sbt-test/basic/binding-mode/src/main/resources/scala-native/header.h b/modules/sbt-plugin/src/sbt-test/basic/binding-mode/src/main/resources/scala-native/header.h
index 26818b7f..f76b6359 100644
--- a/modules/sbt-plugin/src/sbt-test/basic/binding-mode/src/main/resources/scala-native/header.h
+++ b/modules/sbt-plugin/src/sbt-test/basic/binding-mode/src/main/resources/scala-native/header.h
@@ -1,2 +1,8 @@
 #include <stdbool.h>
+
+typedef struct {
+  int i;
+} mystruct;
+
+bool hello2(int i, mystruct y);
 bool hello(int i, float y);
diff --git a/modules/sbt-plugin/src/sbt-test/basic/binding-mode/src/main/resources/scala-native/lib.c b/modules/sbt-plugin/src/sbt-test/basic/binding-mode/src/main/resources/scala-native/lib.c
index 724f5234..4a99aa55 100644
--- a/modules/sbt-plugin/src/sbt-test/basic/binding-mode/src/main/resources/scala-native/lib.c
+++ b/modules/sbt-plugin/src/sbt-test/basic/binding-mode/src/main/resources/scala-native/lib.c
@@ -5,3 +5,8 @@ bool hello(int i, float y) {
   printf("%f", i * y);
   return true;
 }
+
+bool hello2(int i, mystruct y) {
+  printf("%d", i * ((int)y.i));
+  return true;
+}
diff --git a/modules/sbt-plugin/src/sbt-test/basic/multi-file/build.sbt b/modules/sbt-plugin/src/sbt-test/basic/multi-file/build.sbt
index 67ff0734..714d7daa 100644
--- a/modules/sbt-plugin/src/sbt-test/basic/multi-file/build.sbt
+++ b/modules/sbt-plugin/src/sbt-test/basic/multi-file/build.sbt
@@ -3,15 +3,17 @@ enablePlugins(BindgenPlugin, ScalaNativePlugin, ScalaNativeJUnitPlugin)
 import bindgen.interface.Binding
 import java.util.concurrent.atomic.AtomicReference
 
-scalaVersion := "3.2.2"
+scalaVersion := "3.3.1"
 
 bindgenBindings := {
   Seq(
-    Binding(
-      headerFile =
+    Binding
+      .builder(
         baseDirectory.value / "src" / "main" / "resources" / "scala-native" / "header.h",
-      packageName = "bindings",
-      multiFile = true
-    )
+        "bindings"
+      )
+      .withMultiFile(true)
+      .addCImport("header.h")
+      .build
   )
 }
diff --git a/modules/sbt-plugin/src/sbt-test/basic/multi-file/project/plugins.sbt b/modules/sbt-plugin/src/sbt-test/basic/multi-file/project/plugins.sbt
index 08d68fcf..a98839d8 100644
--- a/modules/sbt-plugin/src/sbt-test/basic/multi-file/project/plugins.sbt
+++ b/modules/sbt-plugin/src/sbt-test/basic/multi-file/project/plugins.sbt
@@ -1,4 +1,4 @@
 addSbtPlugin(
   "com.indoorvivants" % "bindgen-sbt-plugin" % sys.props("plugin.version")
 )
-addSbtPlugin("org.scala-native" % "sbt-scala-native" % "0.4.7")
+addSbtPlugin("org.scala-native" % "sbt-scala-native" % "0.4.16")
diff --git a/modules/sbt-plugin/src/sbt-test/basic/multi-file/src/main/resources/scala-native/header.h b/modules/sbt-plugin/src/sbt-test/basic/multi-file/src/main/resources/scala-native/header.h
index 3191b5cf..95a355e9 100644
--- a/modules/sbt-plugin/src/sbt-test/basic/multi-file/src/main/resources/scala-native/header.h
+++ b/modules/sbt-plugin/src/sbt-test/basic/multi-file/src/main/resources/scala-native/header.h
@@ -3,12 +3,14 @@ bool hello(int i, float y);
 
 typedef float position;
 
-struct Test {
+typedef struct {
   char x;
-};
+} Test;
 
 union Bla {
   char x;
 };
 
 enum X { A, B };
+
+bool hello2(int i, Test y);
diff --git a/modules/sbt-plugin/src/sbt-test/basic/multi-file/src/main/resources/scala-native/lib.c b/modules/sbt-plugin/src/sbt-test/basic/multi-file/src/main/resources/scala-native/lib.c
index 724f5234..9c2de9d0 100644
--- a/modules/sbt-plugin/src/sbt-test/basic/multi-file/src/main/resources/scala-native/lib.c
+++ b/modules/sbt-plugin/src/sbt-test/basic/multi-file/src/main/resources/scala-native/lib.c
@@ -5,3 +5,8 @@ bool hello(int i, float y) {
   printf("%f", i * y);
   return true;
 }
+
+bool hello2(int i, Test y) {
+  printf("%d", i * ((int)y.x));
+  return true;
+}
diff --git a/modules/sbt-plugin/src/sbt-test/basic/multi-file/test b/modules/sbt-plugin/src/sbt-test/basic/multi-file/test
index 28b48fd3..1e2542ca 100644
--- a/modules/sbt-plugin/src/sbt-test/basic/multi-file/test
+++ b/modules/sbt-plugin/src/sbt-test/basic/multi-file/test
@@ -1,7 +1,7 @@
 > run
-$ exists target/scala-3.2.2/resource_managed/main/scala-native/bindings.c 
-$ exists target/scala-3.2.2/src_managed/main/bindings/aliases.scala
-$ exists target/scala-3.2.2/src_managed/main/bindings/enumerations.scala
-$ exists target/scala-3.2.2/src_managed/main/bindings/structs.scala
-$ exists target/scala-3.2.2/src_managed/main/bindings/unions.scala
-$ exists target/scala-3.2.2/src_managed/main/bindings/functions.scala
+$ exists target/scala-3.3.1/resource_managed/main/scala-native/bindings.c 
+$ exists target/scala-3.3.1/src_managed/main/bindings/aliases.scala
+$ exists target/scala-3.3.1/src_managed/main/bindings/enumerations.scala
+$ exists target/scala-3.3.1/src_managed/main/bindings/structs.scala
+$ exists target/scala-3.3.1/src_managed/main/bindings/unions.scala
+$ exists target/scala-3.3.1/src_managed/main/bindings/functions.scala