diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 8df4e7a..f37b8c6 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -41,7 +41,7 @@ jobs: docker load --input /tmp/recognizer.tar docker image ls -a - name: Default annotation - run: docker run recognizer /bin/bash -c "recognizer -f reCOGnizer/cicd/genes.fasta -rd resources_directory --quiet -dbs COG,TIGRFAM --test-run" + run: docker run recognizer /bin/bash -c "recognizer -f reCOGnizer/cicd/genes.fasta -rd resources_directory --quiet -dbs COG,TIGR --test-run" taxonomy-based-annotation: runs-on: ubuntu-latest @@ -73,4 +73,4 @@ jobs: docker load --input /tmp/recognizer.tar docker image ls -a - name: Custom database annotation - run: docker run recognizer /bin/bash -c "mkdir resources_directory; tar -xzf reCOGnizer/cicd/cdd.tar.gz -C resources_directory; makeprofiledb -in reCOGnizer/cicd/ci.pn -out resources_directory/db; recognizer -f reCOGnizer/cicd/genes.fasta -rd resources_directory --quiet -dbs COG,TIGR --custom-databases --test-run" + run: docker run recognizer /bin/bash -c "mkdir custom_dir; tar -xzf reCOGnizer/cicd/cdd.tar.gz -C custom_dir; makeprofiledb -in reCOGnizer/cicd/ci.pn -out custom_dir/db; recognizer -f reCOGnizer/cicd/genes.fasta -rd resources_directory --quiet -dbs resources_directory/db --custom-databases --test-run"