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The auxiliary notebooks are divided into:

  • model_aggregated_*: microbiome prediction at different taxonomic levels (class, family, genus, order, phylum)

  • model_reference_*domainFeatures*: relevant feature analysis (1, 2, 3 or all domain features)

  • model_transferLearning*: transfer learning analysis. In a 100 samples subset from Walters et al., 2018 with 2, 3 or all features; or in Maarastawi et al. dataset with differente features.

  • compute_performance_per_sample_test_set: computation for supplementary figure.

  • reference_model_novel_predictions: base notebook for the not-installation user-friendly interface https://tinyurl.com/DeepLatentMicrobiome-Maize