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the code for use of the new datas? #8

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forestlin7 opened this issue Jul 1, 2021 · 1 comment

forestlin7 commented Jul 1, 2021

If i want to use a new data, how can i change from .txt to .mtx in geo?

Contributor

Jerry001 commented Jul 25, 2021

Hi forestlin7,

mtx files are not necessary. Here we use sparse matrix to only to save space.

mtx = data_dir + 'uc_epi.mtx'
x = read_mtx(mtx)
x = x.transpose().todense()

Also, for computational efficiency, we currently use highly variable genes (~2000, still a random number) for analysis.

Jiarui

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