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Could provide some example file format? #44

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ryuzheng opened this issue Aug 21, 2023 · 2 comments
Open

Could provide some example file format? #44

ryuzheng opened this issue Aug 21, 2023 · 2 comments

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@ryuzheng
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Hello, Can you provide example file of meta data?
And how to create the hg38_genecode_v28.geneslop2k.bed.gz, promoter_slop2k.sorted.bed.gz, hg38_CGI.sorted.bed.gz files? Does slop represent adding 2000bp before and after the region? Thank you.

@kenrchandradoss
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I second that.

Also, if you could add URL here (https://lhqing.github.io/ALLCools/cell_level/basic/intro_basic_clustering.html), that would be awesome. Thank you :)

@williamthistle
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Hi! I also would like to know more about the hg38_genecode_v28.geneslop2k.bed.gz file. I tried Googling around but didn't find any information.

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