From b49d9220bcf1278906479e8057e2d9a0879b6511 Mon Sep 17 00:00:00 2001 From: Brian Jimenez Garcia Date: Thu, 18 Jun 2020 15:45:50 +0200 Subject: [PATCH] Typos --- README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 3b9c2cc..e225ec0 100644 --- a/README.md +++ b/README.md @@ -44,15 +44,15 @@ Each of the scenarios contains for the 18 complexes of the benchmark the followi * `zdock.out`: Result of the ZDock simulation. * `top100.tgz`: Top 100 predicted models generated by ZDock. * `receptor.pdb` and `ligand.pdb`: PDB files for the starting structures (receptor and ligand respectively). -* `*.block`: list of residued blocked for the scenario. In case of antibody-antigen complex, a `cdr.block` file is also provided with the list of blocked residues corresponding to the CDR predicted loops. -* `receptor_rotated.pdb` and `ligand_rotated.pdb`: PDB files for the starting structures after being randomly rotated to avoid simulation artifcats (receptor and ligand respectively). +* `*.block`: list of residues blocked for the scenario. In case of antibody-antigen complex, a `cdr.block` file is also provided with the list of blocked residues corresponding to the CDR predicted loops. +* `receptor_rotated.pdb` and `ligand_rotated.pdb`: PDB files for the starting structures after being randomly rotated to avoid simulation artifacts (receptor and ligand respectively). * `receptor_blocked.pdb` and `ligand_blocked.pdb`: PDB files with blocked residues according to the ZDock protocol (receptor and ligand respectively). * `receptor_surface.pdb` and `ligand_surface.pdb`: PDB files with marked surface residues according to the ZDock protocol (receptor and ligand respectively). ### 2.2. Refinement -Refinement with HADDOCK-CG protocol can be found at `refinement/haddock`. Results of the refinment protocol for two scenarios are provided: `blind` and `membrane`. Each of those scenarios contains a folder for each of the complexes of the dataset. For each complex, two files are provided: +Refinement with HADDOCK-CG protocol can be found at `refinement/haddock`. Results of the refinement protocol for two scenarios are provided: `blind` and `membrane`. Each of these scenarios contains a folder for each of the complexes of the dataset. For each complex, two files are provided: * `haddock_rank.list`: for each of the diffeerent models refined, values for fnat, i-RMSD, l-RMSD and scoring is provided. For example: @@ -60,4 +60,4 @@ Refinement with HADDOCK-CG protocol can be found at `refinement/haddock`. Result 1k4c_80w.pdb 0.0 20.182 50.751 -217.43964 ``` -* `models.tgz`: compressed tar archive which contains the top 100 models refined by the HADDOCK-CG protocol. \ No newline at end of file +* `models.tgz`: compressed tar archive which contains the top 100 models refined by the HADDOCK-CG protocol.