Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Lineage Registration based on tree matching #26

Open
maarzt opened this issue Apr 20, 2023 · 0 comments
Open

Lineage Registration based on tree matching #26

maarzt opened this issue Apr 20, 2023 · 0 comments

Comments

@maarzt
Copy link
Contributor

maarzt commented Apr 20, 2023

User Story

The Lineage Registration plugin currently uses cell division directions to identify and pair cells between two embryos.
But for Macrostomum the division directions don't appear to be so much preserved.

Instead by looking on the TrackScheme one can easily identify certain cells, based on the cell division pattern and the time between cell division. The tree matching algorithm implemented by @stefanhahmann, uses exactly this information, to match two lineage trees. We can use the tree matching algorithm in the lineage registration plugin to register lineages rather than using division directions?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant